Cp4.1LG01g02650 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g02650
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHistone deacetylase 6
LocationCp4.1LG01 : 2363706 .. 2366309 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAGGTTATTGATTTACAAGTCCAAGTAACTCCTGAAATTCTTTGTTCATCGTTCATCAATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGAGGTATCGTAATCAAAACACTCCGGCCAGTTCTCTTCGAGTCGCCGGAAAATATCCTAGTTCCTATTTTTCTTTTGTCGCTGTTGAATTGAATCGGTGATCTTGGCTAAAATGTTGTTTTCATCTTCTCTAGCCATGCGTAATCGAAGAGGAAGGTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTACCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAGTCAGTTTTTCTATACCCTAAACCGTGTGTGTAGTTCCTTTTTCAGTGGGATTTTCATTTCTGCTGTGGACATTGCTGAAGGGTTATGTGCTTAATTTTTGTTTGATTTGAGAATTTCTTTGTCAGACAGTTAAGAATGATGTCTTTTTTGTGGATTGTGGGTTTGAATCTCCTTGGGTATCTATGAAGACTCTGAAATATGGTATCCACCCCAAAGTTTTAGGTTAAGGTCTAGAAAACTGGCCATGTTCTTCTTCCTGGATTCAAATAGGAAATCAGAACTGAATCTCCTTTCTTCAAATGCTTTGCTATTTTCAAGGAACAAAATAGGGTAGAAATATGGGATACGTTAAGCTATTTGTTTGTGTACGCTGTTTTGTGGGATCCACATTGGTTGAGGAAGCAAACGAAGCATTCTTTATAAGGGTGTGGAAGCAACCTTGAGGGGAAAGCCCAAAAAGGACCGTACATTGTTTTCCTCCATCTGTTGCGTTTCATCCATTCGTGAGTAGATTAGATTTCTTCATACCTTGCATTAACAGCTTACTAGATTTTCATCTCAATGAGGCTATTGTGATTTATGAAACATGGCAATACGTGAAAATATAGTAATGCCTTTAATGTATCGTGGACTTTCCTCTTATGCTGGCTTAGATTTGGTTTATCAGAGAATTGTTTTCTTACCTAAATTATTTTTGACGAATCTTAGATATCTGGAGGCTCCCCTCCCTGCAATTATGTTCATAGTCACCTCCGCTAATCCTTAGGAGCCAACACGCACTCCAAGAGACAATAAAGATTTTAAATTTATTGTCTACATGGAGGCTTTAAAACCAAGATCTCGTTTATATGCAGCAAGTGGAGTGCATAAGCCTCTCTAGAGATAGGGGTGAGTACTACACCAGTTCGTAAGTCAAGTACGGAACGAGCCTTGTCTACGAACTTTAGAAATAGGGGCGAAGCAGCTCAACCGATAGGGAGAGGGTTGATCTCATCTTGCTTGCTTCTGGCGAAACTTAACACACTAGATAATCAGCATTCTTTTATGATAGGAATACGACTTTTTAGGCCAACCACAACAAATATCATAAGCAATAGTAAAGCCAAGCCAGATAAAGGCGAGCAGCCCAACTAGCAATAGCAAACAGCCTTCTTATAGCCTCTTTTTCCCCTTACTTCCTATTATCTCTTAAAGCTAGCCTTTACCACTAAGGTCACCATCGGAAGTTAGTATTCCATTGCTGCCATACATTAAAGGTTTAAGTTCTTCATGTCATTCCCAAAAGATCTTGAAGGATATATTTCAAAATTTCAAGCATTTACCACTAAGGCGGCCACCATTGGAAGTTAGTATTCCATCGATATCATATATAAATGATTCAAGTAAATCCATTTCAGCTGGACATCTCTTTTAGATGGTCTGTACGAGTCTAATATAAGTAGATGTTTTGGTATCTTAACTTTACAAGTGGTGTATAATTTTCGGTCTGTAAGTGCCTTCAGACCCATTTTTATGTTTCTGTTTGGTTTCAGTTTCATGATTTGGAAAACACCTATTTATTTGGTTTATTAATCCATGGAACAATCTACTTATGCAAGATGTCAGAATCCCAAGGAGAACTGGTTGTGTTTGTGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCACAGTCTTGCACTCAGCTACAGGTAAATGTAAAATGGTTCCTTAATGATACTTTACTTTCTGCTCTTAAGGTTCCTCGATGCCTTGTTTATTAACAATTTGCATTTGGAAACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCACAATTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGTCCCGCCATTTCGATAGGCTTAATCTTCCTGCAGGGAGACTTAAATTTGAGACTTGTGTTGTAATTTTTAGTCTTGATATCTTAGGTGTCTTGGTCTCTTAGTTTGAGGAAGTGAGCATTTCAAAATGTGATCTTCTTCACATGAATTGGGTTGAGCTTGTCAGATGTTCATGATGGGCTACTGATTGTTGCTTTTACAGAGATATGAGGGACAAAAAGTTGGAGTCTCCTATCTTGTTCAGGAAAATTTTAGTGACTTCTACAAATCTTGATGATAATCAAATTGGTTCTCACAGTTTCAACT

mRNA sequence

ACAAAGGTTATTGATTTACAAGTCCAAGTAACTCCTGAAATTCTTTGTTCATCGTTCATCAATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGAGCCATGCGTAATCGAAGAGGAAGGTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTACCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGTTTGTGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCACAGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCACAATTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGTCCCGCCATTTCGATAGGCTTAATCTTCCTGCAGGGAGACTTAAATTTGAGACTTGTGTTGTAATTTTTAGTCTTGATATCTTAGGTGTCTTGGTCTCTTAGTTTGAGGAAGTGAGCATTTCAAAATGTGATCTTCTTCACATGAATTGGGTTGAGCTTGTCAGATGTTCATGATGGGCTACTGATTGTTGCTTTTACAGAGATATGAGGGACAAAAAGTTGGAGTCTCCTATCTTGTTCAGGAAAATTTTAGTGACTTCTACAAATCTTGATGATAATCAAATTGGTTCTCACAGTTTCAACT

Coding sequence (CDS)

ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGAGCCATGCGTAATCGAAGAGGAAGGTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTACCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGTTTGTGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCACAGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCACAATTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGTCCCGCCATTTCGATAG

Protein sequence

MANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEVPPFR
Homology
[Close]
BLAST of Cp4.1LG01g02650 vs. Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-18
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 1 

Query: 34   VEALTSCDHLPSLCSDLAHIPPPDTACCECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQ 93
            V  L  C HL ++C   A        C +C   +ENW+CL C  V+C R++N HMLQH+ 
Sbjct: 1107 VTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHG 1166

Query: 94   QSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEVPP 143
             S H L LSY DLS WC+ C AY+  Q + +   V  +A+  KFGE  P
Sbjct: 1167 NSGHPLVLSYIDLSAWCYYCQAYVHHQALLD---VKNIAHQNKFGEDMP 1212

[Close]
BLAST of Cp4.1LG01g02650 vs. Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 8.0e-17
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 1 

Query: 34   VEALTSCDHLPSLCSDLAHIPPPDTACCECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQ 93
            V  L+ C HL ++C   A        C  C   +ENW+CL C  V+CSR+VN HM+ H++
Sbjct: 1041 VTPLSWCPHLMAVCPIPAAGLDVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHE 1100

Query: 94   QSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEVPP 143
             S H L LS  DLS WC+ C AY+     ++L+ V   A+  KFGE  P
Sbjct: 1101 ASEHPLVLSCVDLSTWCYVCQAYVHH---EDLQDVKNAAHQNKFGEDMP 1146

[Close]
BLAST of Cp4.1LG01g02650 vs. Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=3 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 8.0e-17
Identity = 55/146 (37.67%), Postives = 75/146 (51.37%), Query Frame = 1 

Query: 2   ANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPD---- 61
           ++ +GSSSS+  P         E +    +  V  L +C HL     ++  +PP      
Sbjct: 822 SSSSGSSSSSTRP-----SHNLEIMDSGPAHAVVPLATCPHL----KEVKPLPPAKINAR 881

Query: 62  TACCECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL 121
           TAC ECQ   E W CL C    C RFVN+H + H+  S+H +ALS +DLSVWC+ CD+Y+
Sbjct: 882 TACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYV 941

Query: 122 -DAQLIQELRPVHEVAYILKFGEVPP 143
            +  LI      HE     KFGE  P
Sbjct: 942 HNPALIGAKSAAHE----SKFGETMP 954

[Close]
BLAST of Cp4.1LG01g02650 vs. Swiss-Prot
Match: UBP44_HUMAN (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 28/84 (33.33%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 36  ALTSCDHLPSL--CSDLAHIPPPDTACCECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQ 95
           A+ +C H+  L    D + + P    C +C   +  W CL C +V C R++ +H L+H+Q
Sbjct: 3   AMDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQ 62

Query: 96  QSNHSLALSYSDLSVWCFSCDAYL 118
           +S+H +AL  +++ V+C+ CD Y+
Sbjct: 63  ESSHPVALEVNEMYVFCYLCDDYV 86

[Close]
BLAST of Cp4.1LG01g02650 vs. Swiss-Prot
Match: SIR2A_DICDI (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-11
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 58  TACCECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL 117
           T C  C +  ENW+C+ C  V CSR VN H  +H++ + H ++ S+SD S WC++CD Y+
Sbjct: 32  TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

[Close]
BLAST of Cp4.1LG01g02650 vs. TrEMBL
Match: A0A0A0KT14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.7e-64
Identity = 119/146 (81.51%), Postives = 128/146 (87.67%), Query Frame = 1 

Query: 1   MANEAGSSSS--NPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDT 60
           MA +AGSSSS  NP   +IE+E  EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  ACCECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLD 120
            C +CQNPKENW+CLCCK+VFCSRFVNKHMLQHY+QS H LALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQLIQELRPVHEVAYILKFGEVPPFR 145
           AQ+IQELRPVHEVAYILKFGE PPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]
BLAST of Cp4.1LG01g02650 vs. TrEMBL
Match: W9SEY2_9ROSA (Histone deacetylase 6 OS=Morus notabilis GN=L484_000250 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.0e-56
Identity = 106/144 (73.61%), Postives = 117/144 (81.25%), Query Frame = 1 

Query: 1   MANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MAN AGSSS+ PE    EE G EE +YG ESGWVEA TSCDHL SL SDL HIP PDT C
Sbjct: 1   MANRAGSSSAPPENPPTEE-GEEELIYGGESGWVEARTSCDHLSSLSSDLTHIPTPDTPC 60

Query: 61  CECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQ 120
             C++P ENWLCLCCK V CSRFVNKHML HY  ++HSLALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  HICEHPDENWLCLCCKEVLCSRFVNKHMLNHYHNTSHSLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 LIQELRPVHEVAYILKFGEVPPFR 145
           +I++LRPV+E AY+LKFGE PP R
Sbjct: 121 VIRQLRPVYETAYLLKFGEAPPSR 143

[Close]
BLAST of Cp4.1LG01g02650 vs. TrEMBL
Match: M5VQ49_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013008mg PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-55
Identity = 105/144 (72.92%), Postives = 118/144 (81.94%), Query Frame = 1 

Query: 1   MANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA +AGSSS+      +E E  EE ++GAESGWV A T CDHLPSL +DLAHIP PDT C
Sbjct: 1   MAAQAGSSSAAQAEPFVENE--EELIFGAESGWVAARTFCDHLPSLSTDLAHIPAPDTPC 60

Query: 61  CECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQ 120
             CQ+P ENWLCLCCK+V CSRFVNKHMLQH+QQ+NH LALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  NRCQHPNENWLCLCCKDVLCSRFVNKHMLQHFQQTNHCLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 LIQELRPVHEVAYILKFGEVPPFR 145
           +I +LR V+E AYILKFGE PPFR
Sbjct: 121 VIPQLRGVYETAYILKFGEAPPFR 142

[Close]
BLAST of Cp4.1LG01g02650 vs. TrEMBL
Match: A0A061E839_THECC (Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao GN=TCM_007207 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.0e-55
Identity = 101/144 (70.14%), Postives = 121/144 (84.03%), Query Frame = 1 

Query: 1   MANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA++AG+SSS+ +  ++EEE   + +YGAESGWVEA T CDHL SL SDLAHIP P+T C
Sbjct: 1   MADQAGASSSHLK-IILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNTPC 60

Query: 61  CECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQ 120
             CQ+P ENWLCLCCK+V CSRFVNKHML+HY+Q+ H +ALSYSDLSVWCF+CD YLDAQ
Sbjct: 61  NRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHCIALSYSDLSVWCFACDTYLDAQ 120

Query: 121 LIQELRPVHEVAYILKFGEVPPFR 145
           +I++LRPVHE AYILKFGE PP R
Sbjct: 121 VIRQLRPVHETAYILKFGEAPPHR 143

[Close]
BLAST of Cp4.1LG01g02650 vs. TrEMBL
Match: W9R976_9ROSA (Histone deacetylase 6 OS=Morus notabilis GN=L484_011523 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-54
Identity = 104/144 (72.22%), Postives = 115/144 (79.86%), Query Frame = 1 

Query: 1   MANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MAN AGSSS+ P      EEG EE +YG ESGWVEA TSCDHL SL  DL HIP PDT C
Sbjct: 1   MANRAGSSSA-PRENPPTEEGEEELIYGGESGWVEARTSCDHLSSLSFDLTHIPTPDTPC 60

Query: 61  CECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQ 120
             C++P ENWLCLCCK V CSRFVNKHML HY  ++HSLALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  HICEHPDENWLCLCCKEVLCSRFVNKHMLNHYHNTSHSLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 LIQELRPVHEVAYILKFGEVPPFR 145
           +I++LRPV+E AY+LKFGE PP R
Sbjct: 121 VIRQLRPVYETAYLLKFGEAPPSR 143

[Close]
BLAST of Cp4.1LG01g02650 vs. TAIR10
Match: AT2G14830.1 (AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 1  MANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
          MA +A SSSS+  P     +  ++++ GA SGWVEA  +CDHL +L  DL H+P PDT C
Sbjct: 1  MAEKAPSSSSSSSPPKEVADETQDWILGAGSGWVEARKTCDHLNTLSPDLLHLPTPDTPC 60

[Close]
BLAST of Cp4.1LG01g02650 vs. NCBI nr
Match: gi|449469124|ref|XP_004152271.1| (PREDICTED: histone deacetylase 6 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 6.7e-64
Identity = 119/146 (81.51%), Postives = 128/146 (87.67%), Query Frame = 1 

Query: 1   MANEAGSSSS--NPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDT 60
           MA +AGSSSS  NP   +IE+E  EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  ACCECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLD 120
            C +CQNPKENW+CLCCK+VFCSRFVNKHMLQHY+QS H LALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQLIQELRPVHEVAYILKFGEVPPFR 145
           AQ+IQELRPVHEVAYILKFGE PPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]
BLAST of Cp4.1LG01g02650 vs. NCBI nr
Match: gi|659108780|ref|XP_008454385.1| (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-63
Identity = 121/148 (81.76%), Postives = 128/148 (86.49%), Query Frame = 1 

Query: 1   MANEAGSSSS--NPEPCVIE--EEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPP 60
           MA EAGSSSS  N  P +IE  +E  EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTACCECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAY 120
            T C +CQNPKENWLCLCCK+VFCSRFVNKHMLQHY+QS H LALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQLIQELRPVHEVAYILKFGEVPPFR 145
           LDAQ+IQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]
BLAST of Cp4.1LG01g02650 vs. NCBI nr
Match: gi|657962890|ref|XP_008373046.1| (PREDICTED: histone deacetylase 6 [Malus domestica])

HSP 1 Score: 233.4 bits (594), Expect = 2.5e-58
Identity = 111/144 (77.08%), Postives = 120/144 (83.33%), Query Frame = 1 

Query: 1   MANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA +AGSSS+  +  +   E  E+  YGAESGWVEA TSCDHL SL SDLAHIP PDTAC
Sbjct: 1   MAAQAGSSSAQEDQFL---ENEEDLFYGAESGWVEARTSCDHLASLSSDLAHIPTPDTAC 60

Query: 61  CECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQ 120
             CQ+P ENWLCLCCK+V CSRFVNKHMLQHYQQSNH LALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  NRCQHPNENWLCLCCKDVLCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 LIQELRPVHEVAYILKFGEVPPFR 145
           LI +LRPV+E AYILKFGE PPFR
Sbjct: 121 LIPQLRPVYETAYILKFGEAPPFR 141

[Close]
BLAST of Cp4.1LG01g02650 vs. NCBI nr
Match: gi|694414340|ref|XP_009335394.1| (PREDICTED: histone deacetylase 6-like [Pyrus x bretschneideri])

HSP 1 Score: 232.6 bits (592), Expect = 4.2e-58
Identity = 111/144 (77.08%), Postives = 120/144 (83.33%), Query Frame = 1 

Query: 1   MANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA +AGSSS+  +  +   E  E+  YGAESGWVEA TSCDHL SL SDLAHIP PDTAC
Sbjct: 1   MAAQAGSSSAQEDQFL---ENEEDLFYGAESGWVEARTSCDHLASLSSDLAHIPIPDTAC 60

Query: 61  CECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQ 120
             CQ+P ENWLCLCCK+V CSRFVNKHMLQHYQQSNH LALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  NRCQHPNENWLCLCCKDVLCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 LIQELRPVHEVAYILKFGEVPPFR 145
           LI +LRPV+E AYILKFGE PPFR
Sbjct: 121 LIPQLRPVYETAYILKFGEAPPFR 141

[Close]
BLAST of Cp4.1LG01g02650 vs. NCBI nr
Match: gi|645261742|ref|XP_008236440.1| (PREDICTED: histone deacetylase 6 [Prunus mume])

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 106/144 (73.61%), Postives = 120/144 (83.33%), Query Frame = 1 

Query: 1   MANEAGSSSSNPEPCVIEEEGGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA +AGSSS+  E   +E E  EE ++GAESGWVEA T CDHLPSL +DLAHIP PDT C
Sbjct: 1   MAAQAGSSSAAQEDPFVENE--EELIFGAESGWVEARTFCDHLPSLSTDLAHIPAPDTPC 60

Query: 61  CECQNPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQ 120
             CQ+P ENWLCLCCK++ CSRFVNKHMLQH+QQ+NH LALSYSDLSVWCFSCDAYLDAQ
Sbjct: 61  NRCQHPNENWLCLCCKDILCSRFVNKHMLQHFQQTNHCLALSYSDLSVWCFSCDAYLDAQ 120

Query: 121 LIQELRPVHEVAYILKFGEVPPFR 145
           +I +LR V+E AYILKFGE PPFR
Sbjct: 121 VIPQLRGVYETAYILKFGEAPPFR 142

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g02650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HDAC6_HUMAN4.2e-1842.20Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2[more]
HDAC6_MOUSE8.0e-1741.28Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3[more]
HDA6_CAEEL8.0e-1737.67Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=3 SV=2[more]
UBP44_HUMAN2.9e-1133.33Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2[more]
SIR2A_DICDI5.0e-1143.33NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1[more]
BLAST of Cp4.1LG01g02650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT14_CUCSA4.7e-6481.51Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000940 PE=4 SV=1[more]
W9SEY2_9ROSA8.0e-5673.61Histone deacetylase 6 OS=Morus notabilis GN=L484_000250 PE=4 SV=1[more]
M5VQ49_PRUPE1.8e-5572.92Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013008mg PE=4 SV=1[more]
A0A061E839_THECC3.0e-5570.14Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao GN=TCM_... [more]
W9R976_9ROSA1.5e-5472.22Histone deacetylase 6 OS=Morus notabilis GN=L484_011523 PE=4 SV=1[more]
BLAST of Cp4.1LG01g02650 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G14830.11.7e-0948.33 Regulator of Vps4 activity in the MVB pathway protein[more]
BLAST of Cp4.1LG01g02650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469124|ref|XP_004152271.1|6.7e-6481.51PREDICTED: histone deacetylase 6 [Cucumis sativus][more]
gi|659108780|ref|XP_008454385.1|3.3e-6381.76PREDICTED: histone deacetylase 6 [Cucumis melo][more]
gi|657962890|ref|XP_008373046.1|2.5e-5877.08PREDICTED: histone deacetylase 6 [Malus domestica][more]
gi|694414340|ref|XP_009335394.1|4.2e-5877.08PREDICTED: histone deacetylase 6-like [Pyrus x bretschneideri][more]
gi|645261742|ref|XP_008236440.1|1.4e-5673.61PREDICTED: histone deacetylase 6 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001607Znf_UBP
IPR000286His_deacetylse
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0070461 SAGA-type complex
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g02650.1Cp4.1LG01g02650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000286Histone deacetylase superfamilyPANTHERPTHR10625HISTONE DEACETYLASEcoord: 3..142
score: 9.1
IPR001607Zinc finger, UBP-typePFAMPF02148zf-UBPcoord: 60..118
score: 4.1
IPR001607Zinc finger, UBP-typeSMARTSM00290Zf_UBP_1coord: 59..108
score: 1.
IPR001607Zinc finger, UBP-typePROFILEPS50271ZF_UBPcoord: 58..119
score: 17
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 38..126
score: 1.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 38..129
score: 1.65

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g02650CmaCh04G004550Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g02650CmoCh04G004870Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g02650Csa4G000940Cucumber (Chinese Long) v2cpecuB402
Cp4.1LG01g02650MELO3C017992Melon (DHL92) v3.5.1cpemeB422
Cp4.1LG01g02650ClCG10G010510Watermelon (Charleston Gray)cpewcgB345
Cp4.1LG01g02650CSPI04G00480Wild cucumber (PI 183967)cpecpiB399
Cp4.1LG01g02650MELO3C017992.2Melon (DHL92) v3.6.1cpemedB494
Cp4.1LG01g02650CsaV3_4G000430Cucumber (Chinese Long) v3cpecucB0499
Cp4.1LG01g02650Bhi11G000960Wax gourdcpewgoB0477
Cp4.1LG01g02650CsGy4G000410Cucumber (Gy14) v2cgybcpeB504
Cp4.1LG01g02650Carg08126Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g02650Cucumber (Chinese Long) v3cpecucB0481
Cp4.1LG01g02650Cucumber (Chinese Long) v3cpecucB0511
Cp4.1LG01g02650Cucumber (Chinese Long) v3cpecucB0576
Cp4.1LG01g02650Cucumber (Chinese Long) v3cpecucB0582
Cp4.1LG01g02650Wax gourdcpewgoB0539
Cp4.1LG01g02650Wax gourdcpewgoB0547
Cp4.1LG01g02650Wax gourdcpewgoB0580
Cp4.1LG01g02650Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g02650Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG01g02650Cucumber (Gy14) v1cgycpeB0192
Cp4.1LG01g02650Cucumber (Gy14) v1cgycpeB0218
Cp4.1LG01g02650Cucumber (Gy14) v1cgycpeB0599
Cp4.1LG01g02650Cucurbita maxima (Rimu)cmacpeB136
Cp4.1LG01g02650Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g02650Cucurbita moschata (Rifu)cmocpeB114
Cp4.1LG01g02650Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g02650Cucurbita moschata (Rifu)cmocpeB815
Cp4.1LG01g02650Wild cucumber (PI 183967)cpecpiB470
Cp4.1LG01g02650Cucumber (Chinese Long) v2cpecuB468
Cp4.1LG01g02650Cucumber (Chinese Long) v2cpecuB470
Cp4.1LG01g02650Bottle gourd (USVL1VR-Ls)cpelsiB325
Cp4.1LG01g02650Bottle gourd (USVL1VR-Ls)cpelsiB340
Cp4.1LG01g02650Bottle gourd (USVL1VR-Ls)cpelsiB348
Cp4.1LG01g02650Watermelon (Charleston Gray)cpewcgB378
Cp4.1LG01g02650Watermelon (97103) v1cpewmB382
Cp4.1LG01g02650Watermelon (97103) v1cpewmB453
Cp4.1LG01g02650Melon (DHL92) v3.5.1cpemeB394
Cp4.1LG01g02650Melon (DHL92) v3.5.1cpemeB435
Cp4.1LG01g02650Cucumber (Gy14) v2cgybcpeB213
Cp4.1LG01g02650Cucumber (Gy14) v2cgybcpeB515
Cp4.1LG01g02650Cucumber (Gy14) v2cgybcpeB805
Cp4.1LG01g02650Melon (DHL92) v3.6.1cpemedB457
Cp4.1LG01g02650Melon (DHL92) v3.6.1cpemedB472
Cp4.1LG01g02650Melon (DHL92) v3.6.1cpemedB492
Cp4.1LG01g02650Melon (DHL92) v3.6.1cpemedB507
Cp4.1LG01g02650Silver-seed gourdcarcpeB0408