Csa3G258160 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G258160
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Transcription elongation factor SPT4-like protein; contains IPR016046 (Transcription initiation Spt4-like), IPR022800 (Spt4/RpoE2 zinc finger)
Location	Chr3 : 16039015 .. 16044968 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTGCAGTCTCCTTTTTTCAAGAATCTTTGGTTGTTCTTATAAATGCTTGCATTCAATATCTAATAGTTTAAGATCTTTGAACTTCTCGAATTGTATGTTATATTGAGTATTGGTCATCCATACAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGTTTGTATAATTTTCTATTCCTTTATTCTCTTTTTGTTTTACTGTTTGTCGTCTTCTTCTGGAATTAACGCTCCTATCCAACGTGGATAATGTTAGCTTAACCTTTTGGTGATTTAATATGATATTAGAGCGTGTGGTTTAGGAGAACTTGCTTTCGAACTCCTGCAATGTTATTTACTCTTCAATTAATATTCGTTTTAACTTGGGAGATGACACAATATTAAATTTACTAAGGTATTGGGTCAATCAATGATTTAATACATAGAAGGTTGGGCATGACATATAATTTCAGTTGTTTCAATGGACATCTACCAAATTTCTATATGAAACCTTAAAAGATTCAATCAATATTAAAAGAAGTAATATTCAGCTTATGATCATGCTGTATTTCACTTACATTTGTTCTGCCCTTTTCCATATCTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCCCTTTCTTCTTTCTTACCCCCCTCCCATTAGTTTTTGCAACTAAAGATGTTTTTGTCTTAGAATTGACTAACCTGAGTACTTGTTATTCTAGTAGCAGATAACGTCTTCCTGTCTGACTTTTTAACTTCTGTTGGCCAAGTTTCAACTTTCAAGAACGTCCGTACATAGAACAAAAGAAAGGATGTCACTTTCATTCTTTAATATATAAATTTGTCCATATCCCGAGCCTAATATTAGACCATGAACAGTTGTTCGTTTGAAGCTTGGACCTGTGCACTTTCTGATATCCTTTGAATTATAATTGTAAGAAACTGCTTCGTGGCTGCTGAACGCCTAAAACTGACCAATATCCCAAATTTTTCAGTGAATAATGTATTGCATGGGTTAGTGTTTAGTTCACTTATTTGTATGCTTGATGAAATGGTTGGCAACTTGGAGCAATGACCTTTATTTTTATTATAGGATCATTGTTGATAGAATTGTTGAGTAACCTGGAATTTATGAAACCAGCATTTCTGCTTCTTTTTTTCCTCTTCTTTGAATTTTGTTGTCTTATCTACCTTTCTTTTCACCTAATTTTAATAATTCATTAAATTTCTTGCTTGTAACCTTTTAGCTTTGTGTATAATTTGTTAGCTCTATAGTAGCATTTGGCATTTGATTTTCAGAATTTATATTTCCTTCCAATCTTGTAGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGGTTTGCAACCAATCATTTCCTAGCATAAATTTCATCATGACACGATTCATTCTTCTGTGTTCATCTTGTACCAAAGCCATCAGGAATATCAATGCCCATTGGTCAATTGTTTCTGGTCAAGGATTTTTCATTGATTTACTAATCTTATTTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTCTGTTTTTGTTTTTTATTCTTTGTGTTGTTTTAAACTATCAATAAATTCAGCGGCTTCTCTTGCCTAACTTCAAAAACTAAACATCAGGTTTGGGAAATTGGTACATGTGGAATTGGAGGACATCTGGTCCCTTGGGTTGGGAACAACCCTTAGTCTTTCCATTTAAAACAGTACAGTTGGCTTGGCTTGGCTTATTTTTAAAAATTGGAGAGGATTCACTTACCCTTGTATATACTTCTATCTCTCTTGGCGGTAGACAGTTTCTCACAAAGAAAAACATAAACAAAGATTTTTCACTTCAACTGGTCCATGGGAAAGTTGGACTACTGTAGAAGGACCCAACCTCCTAGATTTCAATTTTCATGGTCATATAATTTGAGGCACGAATTGTTGAGCAACATCCCATTGACCCAAACACAGTTTTTCTTCAAATGTACTTGTTTTTCCATGCCTTGGTTCTCATCTCCTTATAAATTCAAGCCTTCTCATATGCCTCGTTTCATAAGTTATTGATCTTTTTCAACTGTTACAATCCCTTCTCGTCGACTAGTTACAAACTCATTGCATTCTCATATGCCTTACCTTCCAACTCTACTAGAAGGTGGCATGTTTTGCCAAAAACTACGTGTAAAGAGAGATCCCATGTGGACTTTTCAATGCAGTCCTACATGCCTACAATGCACCATTTAATTTCTTTGTGCAATCTTTGAGTGAATAGTCCATTGTCTTCTGAAGTATACCTTTACCTCTCTGTTGCAAAATTCTATTTGTCAATTTGGTTGAGAGTGAAAGGCTAGGGTTATCCTATGTCTTACCCTACATTTAGCCAAGAGTGTGCAAAGATTACCTTGCTTTCATTTGTAGGAGTATTGCCTTTACCCATGACCCATGTTGACACGTGATCAATAGCAAAATGTATTTGTTGTTGCTTGAGGATGGAAAGGCCCTATGAATTCATTCCAAACCCATTGAATAATTTCGCTTCAGAATGTCCTGCAAGAACATTTCATCTTCTCTAGAGATATTTCTTGTTGTTGACATTTTTCATGTCCTGTTAAAAGAATAAATTTCAAATACCGAGAATTTATTCTTAGATAACTCCGCATTTTTTTACCATCTCGTAAAAGATCATCATTGTGCACCTTTGTGAATGTGATGGATGCGTAGTGTATGGCATTCTTCTAAATGCAAAAGTACCATATTGGATGTGGACGGTCTCCTCTGGAGCTAATTCTAATTGATGATATTGATAGGACTGCGATTAGATTATTATAAAGGCATATTGGTAATTAGTTTGGGAAGTTTGTTATGGAGTTTTGTTGTAATTAATGGCTAGGGAATGAGAAAGTTAGGCAATATTGTGGTGAGTGAAATAGGGCTTGAGAGTAATTTCAAGAGGGAATGGTTGGCATACCTTGATTACAAATGTGACTTACATGGAGATTTATCTTATAAAGACTTCTCTAATTTGATTGATTTAAAGAGGATAAAATGGTTAATGGAAGATGAAGCTTTTATTGTGTCAAATGATGGTAAGTTGAATGAAGTAAAGGATTGTCCAAAAGTTCCCTTAGAGCATCAGTTACTCCATACTTTGAATGACTCAGATGACTATGGTCATGATATAGGTACTCCTTGTCTTCCCATGGATGATTTTTCTCCACAAGAGGAGCCTCCAGATGACATTAAGCATTCATCATCTCTTCAACCTGCCCTGAATTCAAACAGGGTGAAGCCAAGGTTCATGAAAGCTTTCCCTCTGCATTATTCTCAAAAGAAAGAAATTCTCAGTGTTCTTGACTGCAAAGAAAGAAATTCCCACGCTTTAGAAAAATCTTGTATTTATCTTTTGGTTTCTTCATTTGTTGGCTTCACAACAACACCAGTCTTTGGATCCTGACAAGTTCTTTAAGCAATCTTTTATCTCTCCCCGGATAAGATGTTTATTAAAGGGGTATCCAATCCCCTTTCTCCTAAAGAAATTTTATCTTCTTCTGATGATGGTGAGGAATCAATTGTAAGCATGAGGAGTGAGGAAGTGAATTTCCTATGGAGAAATACTGCAACAGGATTTACTATTGAAGGATATACTTGCAGAAAGCTGTTATCATATTTTTTGCAAATGAAGACATTGGATCGCTTAGTTCAAAGTCTTTTTGCTGGAGCATCACCAATGTTTTCTCTGTATGTTCCTTGCAAGTTAATGTTTTTAGTAAGGTTTGTGGTCTTCAACTGCAAATATTCCTTCTAGATCTCCAGGAGTTATAGTTTAACAGTGTTTACCTTGAGTTTCTTATGGCCCTTTTTGCCTTGAGGTCTCATTTCCATTTCTGAAGGACTTCTTTTAGAATTTTTGGTCTTTTGCTGTGCAATCTTGTCAGTTTTTTGGTTTGACGTTTCTCTTTGTTTGGGCTGGTATGTTTTGGTTCAATTTGTCTCTTAAGAGTCATATGGGGCTCTCTAAGTCTTTTTTGTGCTTCTTAGTTGAAGGTTTTTCTGTCTTATTTGATTTGTATTCTTCATCAGTTTGTTTGCTTCTTATTTTTGTCCTTTGGTTGGGTGTCGTGTATTTTGGAGCATTAGTGTCTTTCCATTTTATTAATAAAGTTTTGTTTCCTTTTCAAAATTAAATAAGAAAGAAAGAAAAGAAAAGTGATATCTTGAGTAACCATCCAGAAGACATTAGTGTTTATGTTGTGCCAATCAGTCTAACATTTGGTCAATAGAGGGCAAGGGTTTCCTTCTCTAACTAATAATTTATGCAGCTTCCCCAATCAATGATTGTTCTTGCCAAGATCAACTCATTATCTCGTTCTCTACCACCGTTGCCCGTCCTTTCTTTATTACCACATGTACTAGACTCATCCATTTCAAAACTTCACCCCTATTCCCTGAACCTCTTTCGCTTTCTGGTTGATGAGTCTCCTTTGCACTTCAATTGATGGTGTAATCCCTTCTTCTCATAAATTTTTGTGATACACAATGAAGAGCTCGTACCGTTTGTACTTTCAAAAGACCATCAGACTGCCTGTTTATGTTTCCTATTTGCATGCAACAACCGTTTTTTCTCTGATTAGACAACTCTAATGAGGTGATTGTGTTAGGGCCCCAATTCTATTGAAATATTCCAGAAGGGGAAAAAAGGGTAACATGAGTGAGAGTTGGTTATGGTGGGGACCACTAGGGCTGTATGGGAGTGAGGAGTGGTCAGTCTATATATAGAATAGGATGTTATTTTCTAGTGTAAGCTTTTGGTAAGTAAACCAGTAGTCTTGAGCAAAGGGAGGTTAAGTTTCTCTGCACTCCAAGGAATTGTAGCCTCCGGGCAACTCTTTGATGTTAATACAAATATTAGTAAGGGATACCTTACAGATTGCTGAAAGAGTGGACTCTTCACTCAAGATATATATCTCAAATGAGATGGTTGCATGTTTTTGGGTTTCATCGGTTTTATTAATATCCAAAACTATTGATGATGTAACTGGGTATAACGAAGTGGTAGTGCAGAGTAGCTTTACAAGTCCTATGTCCTGGAGGGCTGGGAGGAATTTTTTCAAGTTAATTAATAGTCTTCGAAATCTAACTATTAGTGCCTGAAGATGAAATTTGTGGTGTCGTATCGAGCACCTGAAATGTTTCATTTTGCCTTCATTTTACCTTCATTTTACCATTGCTGTCTGAGTACTACAACATGACTTTGTAAAGTTGTAATTCTTATATATTCTAATGCTATTGTTTTTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAGTATGCACCACCAAAACGTGTTTAA

mRNA sequence

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAGTATGCACCACCAAAACGTGTTTAA

Coding sequence (CDS)

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAGTATGCACCACCAAAACGTGTTTAA

Protein sequence

MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV*

Homology

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BLAST of Csa3G258160 vs. Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 4.9e-57
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]

BLAST of Csa3G258160 vs. Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=2 SV=3)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-55
Identity = 94/116 (81.03%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

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BLAST of Csa3G258160 vs. Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.1e-19
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 1


Query: 8  IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVECTTPNFNGIISVM 67
          +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M
Sbjct: 6  VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMM 65

Query: 68 DPARSWAARWLRIGRFVPGCYTLAVSEALP 97
           P  SW A+W RIG F PG Y + V+  LP
Sbjct: 66 SPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94

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BLAST of Csa3G258160 vs. Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

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BLAST of Csa3G258160 vs. Swiss-Prot
Match: SPT4A_MOUSE (Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

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BLAST of Csa3G258160 vs. TrEMBL
Match: A0A0A0L9Q3_CUCSA (Transcription elongation factor SPT4 homolog OS=Cucumis sativus GN=Csa_3G258160 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.2e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

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BLAST of Csa3G258160 vs. TrEMBL
Match: V4U747_9ROSI (Transcription elongation factor SPT4 homolog OS=Citrus clementina GN=CICLE_v10017231mg PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-60
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKR 116
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKR
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115

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BLAST of Csa3G258160 vs. TrEMBL
Match: A0A067GP01_CITSI (Transcription elongation factor SPT4 homolog OS=Citrus sinensis GN=CISIN_1g046522mg PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-60
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKR 116
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKR
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115

[Close]

BLAST of Csa3G258160 vs. TrEMBL
Match: B9RGK4_RICCO (Transcription elongation factor SPT4 homolog OS=Ricinus communis GN=RCOM_1454570 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 7.4e-60
Identity = 110/116 (94.83%), Postives = 111/116 (95.69%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ LCEEERVQY PPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQALCEEERVQYNPPKRV 116

[Close]

BLAST of Csa3G258160 vs. TrEMBL
Match: A0A0D2TNV3_GOSRA (Transcription elongation factor SPT4 homolog OS=Gossypium raimondii GN=B456_012G136700 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-59
Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDED+ERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDNERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEE  VQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEVHVQYVPPKRV 116

[Close]

BLAST of Csa3G258160 vs. TAIR10
Match: AT5G63670.1 (AT5G63670.1 SPT4 homolog 2)

HSP 1 Score: 221.5 bits (563), Expect = 2.8e-58
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]

BLAST of Csa3G258160 vs. TAIR10
Match: AT5G08565.1 (AT5G08565.1 Transcription initiation Spt4-like protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 94/116 (81.03%), Postives = 106/116 (91.38%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]

BLAST of Csa3G258160 vs. NCBI nr
Match: gi|659123238|ref|XP_008461561.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 4.6e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]

BLAST of Csa3G258160 vs. NCBI nr
Match: gi|802537760|ref|XP_012065876.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas])

HSP 1 Score: 241.9 bits (616), Expect = 5.6e-61
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYIPPKRV 116

[Close]

BLAST of Csa3G258160 vs. NCBI nr
Match: gi|567912375|ref|XP_006448501.1| (hypothetical protein CICLE_v10017231mg [Citrus clementina])

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-60
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKR 116
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKR
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115

[Close]

BLAST of Csa3G258160 vs. NCBI nr
Match: gi|255544187|ref|XP_002513156.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Ricinus communis])

HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59
Identity = 110/116 (94.83%), Postives = 111/116 (95.69%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ LCEEERVQY PPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQALCEEERVQYNPPKRV 116

[Close]

BLAST of Csa3G258160 vs. NCBI nr
Match: gi|823256063|ref|XP_012460686.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 isoform X1 [Gossypium raimondii])

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-59
Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 1


Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDED+ERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDNERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEE  VQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEVHVQYVPPKRV 116

The following BLAST results are available for this feature:

BLAST of Csa3G258160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPT42_ARATH	4.9e-57	85.34	Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63...	[more]
SPT41_ARATH	2.1e-55	81.03	Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08...	[more]
SPT4H_DANRE	9.1e-19	48.89	Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1	[more]
SPT4H_PONAB	2.6e-18	41.35	Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1	[more]
SPT4A_MOUSE	3.4e-18	41.35	Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1	[more]

BLAST of Csa3G258160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9Q3_CUCSA	3.2e-63	100.00	Transcription elongation factor SPT4 homolog OS=Cucumis sativus GN=Csa_3G258160 ...	[more]
V4U747_9ROSI	1.1e-60	95.65	Transcription elongation factor SPT4 homolog OS=Citrus clementina GN=CICLE_v1001...	[more]
A0A067GP01_CITSI	1.1e-60	95.65	Transcription elongation factor SPT4 homolog OS=Citrus sinensis GN=CISIN_1g04652...	[more]
B9RGK4_RICCO	7.4e-60	94.83	Transcription elongation factor SPT4 homolog OS=Ricinus communis GN=RCOM_1454570...	[more]
A0A0D2TNV3_GOSRA	2.1e-59	93.97	Transcription elongation factor SPT4 homolog OS=Gossypium raimondii GN=B456_012G...	[more]

BLAST of Csa3G258160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63670.1	2.8e-58	85.34	SPT4 homolog 2	[more]
AT5G08565.1	1.2e-56	81.03	Transcription initiation Spt4-like protein	[more]

BLAST of Csa3G258160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123238\|ref\|XP_008461561.1\|	4.6e-63	100.00	PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]	[more]
gi\|802537760\|ref\|XP_012065876.1\|	5.6e-61	95.69	PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]	[more]
gi\|567912375\|ref\|XP_006448501.1\|	1.6e-60	95.65	hypothetical protein CICLE_v10017231mg [Citrus clementina]	[more]
gi\|255544187\|ref\|XP_002513156.1\|	1.1e-59	94.83	PREDICTED: transcription elongation factor SPT4 homolog 2 [Ricinus communis]	[more]
gi\|823256063\|ref\|XP_012460686.1\|	3.1e-59	93.97	PREDICTED: transcription elongation factor SPT4 homolog 2 isoform X1 [Gossypium ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009287	Spt4
IPR016046	Transcription initiation Spt4-like
IPR022800	Spt4/RpoE2_Znf

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0032786	positive regulation of DNA-templated transcription, elongation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032786	positive regulation of DNA-templated transcription, elongation
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006325	chromatin organization
biological_process	GO:0006397	mRNA processing
biological_process	GO:0034243	regulation of transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0032044	DSIF complex
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0000993	RNA polymerase II core binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU110900	cucumber EST collection version 3.0	transcribed_cluster
CU177541	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G258160.1	Csa3G258160.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU110900	CU110900	transcribed_cluster
CU177541	CU177541	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009287	Transcription initiation Spt4	PIR	PIRSF025023	Spt4	coord: 2..116 score: 1.9
IPR016046	Transcription initiation Spt4-like	PANTHER	PTHR12882	SUPPRESSOR OF TY 4	coord: 1..115 score: 4.5
IPR022800	Spt4/RpoE2 zinc finger	PFAM	PF06093	Spt4	coord: 16..92 score: 8.9
IPR022800	Spt4/RpoE2 zinc finger	SMART	SM01389	Spt4_2	coord: 16..92 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G258160	Cla007123	Watermelon (97103) v1	cuwmB247
Csa3G258160	MELO3C023752	Melon (DHL92) v3.5.1	cumeB161
Csa3G258160	MELO3C023752.2	Melon (DHL92) v3.6.1	cumedB228
Csa3G258160	Cla97C05G094030	Watermelon (97103) v2	cuwmbB218
Csa3G258160	Bhi01G001433	Wax gourd	cuwgoB271
Csa3G258160	CSPI03G20330	Wild cucumber (PI 183967)	cpicuB120
Csa3G258160	Cucsa.031720	Cucumber (Gy14) v1	cgycuB003
Csa3G258160	CsGy3G020070	Cucumber (Gy14) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G258160	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G258160	Silver-seed gourd	carcuB0513
Csa3G258160	Silver-seed gourd	carcuB0780
Csa3G258160	Cucurbita maxima (Rimu)	cmacuB242
Csa3G258160	Cucurbita maxima (Rimu)	cmacuB455
Csa3G258160	Cucurbita moschata (Rifu)	cmocuB229
Csa3G258160	Cucurbita moschata (Rifu)	cmocuB442
Csa3G258160	Watermelon (Charleston Gray)	cuwcgB233
Csa3G258160	Cucurbita pepo (Zucchini)	cpecuB547
Csa3G258160	Cucurbita pepo (Zucchini)	cpecuB600