MELO3C023752 (gene) Melon (DHL92) v3.5.1

NameMELO3C023752
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription elongation factor SPT4 homolog
Locationchr6 : 17955482 .. 17961605 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGCATTTTGGATTAGAGCGATAATTTTACACTGTTTTGGTTAAATTTCATTTTCTCCTCCTTCCCCTCGCGGTCGGTACGATTATTCGTTCCCTATTGTGCTCAGGCCCCGTGACGCCGCCCGCCGGACATTTCTTCCCTCAACCCGCTGCCTTGCCTCCGCCACCGCCGTCCATACATCCAAGTAACTTCTTCATTTATTAAAACTTCTCTCTCTCCCCCTCTAAAGTGGGTAATCTCACCGACAATATAGTTGGAGTAATCAGCAGAAGGTTCCAGTAGGTGATTGGAAACTATCTGGGAGGGATCGGAAGTAATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCCGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTTGCAGTCTCCTTTTTTCAAGAATCTTTGATTGTTCTTATCAATGCTTGCATTCAGTATCTAAATGTTTAAGATCTTTGAACTTCTCGAATTATTTGTTATATTGAGTATTGGTCATGCCTACAGTTTCGAGAATCAGGCTGTGAGAATTGCCCCTTTTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGTTTGAATTTTCTATTTCTTTATTACCTTTTTGTTTTACATGTTTGTCATCTTCTTCTGGAATTAACGCTCCCATTTTGCGTTGGATAGTGTTAGTTTAAACTTTTGGTGATTTAATATGGTATTAGAGCATGTGGTTTAGGAGAACTTGTTTTTAAACTCATGCAATCTTATTTACTCTTCAATTAATATTCATTTTTACTTTAGTCTTCAACCTATTTGGCTGTTTCAACCCATGAGTGAGGGGAGTGTTGGATGATACAATACTAAATTTACTTTCATCCATCAATTTAAGGTATCAGGTCAATCAATGATTTAATACGTAGGAGGTTGGGCATGACATATAATTTCAGTTGTTTCAATGGAAATTTACCAAATTTCTACATGAAACCTTAAAAGGTTCGATCAATATTAAAAGAATTAATATTCAGCTTATGATCATGCTGTTCTGCCCTTTTTGCATATCTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCTCTTTCTTACCCNNNNNNNNNNNNNNNNNNNNAATTAGTTTTTGTCTAAGAATTGACTAACCTGAGTAGTAGCAGATAATGTCTTCCTCTCTGACCTTTAACTTCTGTTGGCCACGTTTCAACTTTCAAGAACATCCGTACATAGAACAAAGGAAAGGATGTTATTTTCATTTTTTAATATAGAAATTGGTCCATATTCCAAGCCTAATATTATACCATGAACAGTTGTTCATTTTAAGCTTGGAAATGTGCACTTTCTGACATCCTTTGAATTATAATTGTAAGAAACCGCTTTGTGGTGCTGAACGCCTAAAAACTGACCAATATCCCAAATTTTGTCAGTGAATAATGTATTGCATGCGCTATTGTTAGTTCACTTATTTGTATACTTGATGAAAAGGTTGGCAACTTGGAGCAATGACCTTTATGAAACCAGCATTTCTGCTTCTTTTTTTCCTCTTCTTTGAACTTTGTTGTTTTATCTACCTTTCTTTTCACCTAATTTTAATAATTCATTAAATTTCTTGCTTGTAATCTTTTAGCTTTGTGTATAATTTGTTAGCTCTATAGTAGCATTTGGCATTTGATTTTCAGAATTTATATTTCCTTCCAATCTTGTAGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGGTTTGCGACCAATCATTTCGTAGCATAAATTTCATCATGACATGTTTACATGTTTCATTATTCTGTGTTCATCTTGTACCAAAGCCATCAGGGATTTTTCATTGATTTACTATTCTAATTTAATTCTCTCTCTCTCTCTCTTTGTTTTCTGTTTTTGTTTTTTATTCTTTTCGTTGTTTTAAACTATCAATAAATTCAGCGGCTTCTCTTGCCTGTAACTTCAAAAACTAAACATCAGGTTTGGGAAATTGGTGCATGTGGAATTGGAGGACATCTAGTTCCTTGGGTTGGGAACAACCCTTAGTCTTTCCATTTAAAACAGTGCAGTTGGGTTGGATTGGCTTAGTTTTAAAATTGGAGAGGATTCAGTTACCCTTGTACTTTTATTTATTTTGGTGATACACAGTTTCTCACAAAGAAAAACTAAAACAAAGATTTTTCACTTCAACTGGTCCATGGGAAAGTTAGACTACTATAAAAGGACCCAACCTCCTAGATTTCAATTTTCATGGTCATAATAATTTGAGGCATGAATTGTTGAGCAACACCCATTGACCCGAACAAAGTTTTTCTTCAAATGTACTTGTTTTGCGATGCCTTGGTTCTTTCCTCCTTATAAATTCAAGCATTCTCATAGCATCATTTCATAAGTTATTGATCTTGTTCAACTGTTACAATCTTTTCTTGTCAACTAGTTACAGACTCATTTCGTTCTCATATGCCCTACCTTCCAACTCTACTAGAAGGTGGCATGTTTTGCCAAAAACTATGTGTAAAGGGAGATCCCATGTGGAGAGTTTTGGATGCGGTCCTACATGCCTACAATGCACCATTCAATTTCTTTGTCCAATCTTTGAGTGAATGGTCCATTGTCTTCTGAAGTATACCCTTGCTCTTTGTTGCAAAAGTCTATTTGTCCATTTGGTTGAGAGTGAAAGGCTAGGGTTATTCTATGTCTTACCCTACATTTAGCCAAGAGAGCGCAAAGATTACCTTGCCTTCATTTGTAGGAGTATTGCCTTTACCCATGACCCATGTTGACACGTGATCAATAGCAAAATGTATTTATTGTTGCTTGAGGATGAAAGGCCCTATGAAATTCATTCCAAACCCATTGAATAATTTCACTTCAGAATGTCCTGCAAGAACATTTCATCTTTTCTAGAGATATTTCTTGTTGTTGACATTTTTCATGTCCCGTTAAAAGAATAAACTTCAAATACTGAGAATTTATTCTTAGATAATTCCGTATCTTTTAACCATCTGGGAAGAGATCACCATTGTGCACCTTTGTGAATGTGATGGATGCATAGTGTAGGGCATTCTTCTAAATGCAGAAGTACCATATCGGATGTGGACGGGGTCTTCTCTGGAACTAATTCTAATTGATGATATTGATAGGAATGTGATTAGATTATTATAAAAGTATATTGGTAATTAGTTTGGGAAGTTTTTCTGGAATTTTGTTGTAATTAACGGCTAGGGGAATGAGAAAGGTGGGCAACATTGTGGTGAGTGAAATAGGGCTTGAGAGTAATTCACGAGAGAACAGTCGACGTACCTTGATTACAATGTTACTTACATGGTGATTTATCTTATAAAGACTTCTCTAGTTCAATTGATTTAAAGAGGATAAAAAAGTTAATGGAAGATGTAGCTTTTATTGTGTCAAATGATGGTAAGTTGAATAAAGTAGAGGATTGTCCAAAAGTTCCCCTAGAGCATCATCTGCTCCTTACTTTGAATGACTCAGATGACTATGGTCATGATATAGGTACTCCTTTTCTTCCCATAGATGATTTTTCTCCACAAGAAGAGCCTCCAGATGAAACTAAACATTTCATCACCTCTTCAACCTACCCTGCATTCAAACAGGGTGAAGTCGAGGTTCATGAAAGCTTTCCTTCTGCATTATTCTCAAAAGAAAGAAGTTCTCAGTGTTCTTGATTGCAAGAAAGAAATTCCGATGCTTTAGAAAAATCTTTTATTTATCTTTGGTTTCTTCATTTGTTGGCTTCACAACAACATCAGTCTTTGGATCCTGACAAGTTCTTTAAGCAATCTTTTATCCCTCTTCCCGGACAAGATGTTTATTAAAGGGGTATCCAATCCCCTCTCTCCTAAAGAAATTTTATCTTCTTTTGATGATGGTGAGGAATCAATTGTATGCATGAGGAGTGAGGAAGTGAATTTCCTATGGACAAATAGTGCAACAGGATTTACTATCAAAGGATATAGTTGCAGAAAGCTGTAATCTTATTTTTGCAAATGAAGACATTGGATCACTTAGTTCAAAACCTTTTTGCTGCAGCATCACTAATGTTCTCTCCATATGTTCCTGACAATTTAAATTTTTTAGTTAAGGCTTGTGGTCTTCAACTGCAACATTTCCTTCTAGATCTCCAGGAGTTATAGTTTAATAGTGTTCACCTTGAGTTTCTACGACCCTTTTTGCCTTGAGGTCTCGTTTCCCTCTCATAAGGACTTCTTTCAGAATTGTGCAATCTTGTGAGTTTTTTGGTTTGACGTTTTTGTTTGGCCTGGCATGTTTTGGTTCAATTTGTCTCTTAGAGTCTTATGAGGGCTCTCTCTCTAAGTCCTTTTTGTGCTTCTTAGTTAAAGGTTTTTCGTCTTATTTGACTTGTATTCTATTTTTGTCTTCTGGTTGGGTGTTGTGTATTTTGGAGCATTAGTGTCTTTCCATTTTATCAATAAAATTTTGTTTCCTTTTCAAAAAAAAGAATATATATATATATATGAAAGAAAAGAAAAAAAAAAGAAAAGTGATATCTTGAGTAACCATCCAGAAGACATTAGTGTTTATGTTGTGCCAATCAATCTAACGTTTGGTCAATAGAGGGCAAGGGTTGCCTTGTCTAACTACTTGTAATTTATGCAGCTTCTCCAATCAATGACTATTCTTGCGTGGATCAACTCATTGTTCTCGTTCTCTACCACTGTTTTTCTTCCTTTCTTTATTACCACATGTACTAGACCCTTTCATTTCAAAACTTCACCCCGAACCTCTTTCGCTTTCTGGTTGATAAGTCTCCTTTGCACTTCAATTGATGGTGTAATCCCTTCTTCTCATAAATTTTTGTGATATGCACAATGAAGGGCTCATACCTTTTGTACTTTTGAAAGACCATCAGAGTGCTTGTTTATGTTTCCTATTTGCACCCAACAACCGTTTTTTCTCTGATTAGACAACTCTACTGAGATGATTATGTTAGGGCCCCAATTCTATTGAAATATTGCAGAACGGGTAAAAAGGGTAACATGAGTGAGAGTGAGAGTTGGTTATGGTAGGGACCACTGGGGCTGTATGGGAGTGAGGAGTGGGCAGTCTATATATAGAATAGGATATTATTGTCTAGGGTAAGCTTTTGGTAAGTAAACCAGTAGTCTTGAGCATTAATCAGTCCTCCGGACGGGAGAAAACGACTCCTTCTACCTACGTGCGACTTCGTCTTTGAAATCTTCTTTGATCCTAGCGTCTGAGGCTTTTAGTGGAATTTTCTGAGTCCTCCGGACCAAAAAGCAAGGGAGATTAAGCTCTGACGCTCTAAGGAATTGTAGCCTCTGGGCAACTCTTTGATATTAATACAAATATTAGTAAGGGATACCTTACAGATTGCTGAAAGAATGGGCTCTTCACTCAAGCTATATATCTCAAATGAGATGGCTGCATGTTTTTGGATTTCATCGGTTTTGTTAATATCCAAAACCATTGATAATCTAACTGGGTACAACAAAGTGGTAGTGCAGAGTAGCTTGACAAGTCCCATATCCTGTAGAGCTGGGAGGAATTTTTCTAAGTTAATTAATAGTCTTCGATATCTAACTATTAGTGCCTGAAGATGAAATTTTTAGTTTTGTATTGAGTATCTTAATGTTTCATTTTTCCATCATTTTACCATTGCTGTCTGAGTACTTCAACATAACTTTGTAAAGTTATAGTTCTTATGTAACGCTATTGTTTTTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAATATGCACCACCAAAACGTGTTTAACCTTATGTTAATCTCTAGTTTCTTCTGATTACAAAAGAATTCCACCTTGTTCATGTACTAGTATTCTTAATTGAACTAGCATTTAGAGTGTGTTGTTCTTTGATTAAAATGAACAGAAGGTATAGTTGCTAACA

mRNA sequence

GATGCATTTTGGATTAGAGCGATAATTTTACACTGTTTTGGTTAAATTTCATTTTCTCCTCCTTCCCCTCGCGGTCGGTACGATTATTCGTTCCCTATTGTGCTCAGGCCCCGTGACGCCGCCCGCCGGACATTTCTTCCCTCAACCCGCTGCCTTGCCTCCGCCACCGCCGTCCATACATCCAAGTAACTTCTTCATTTATTAAAACTTCTCTCTCTCCCCCTCTAAAGTGGGTAATCTCACCGACAATATAGTTGGAGTAATCAGCAGAAGGTTCCAGTAGGTGATTGGAAACTATCTGGGAGGGATCGGAAGTAATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCCGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCAGGCTGTGAGAATTGCCCCTTTTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAATATGCACCACCAAAACGTGTTTAACCTTATGTTAATCTCTAGTTTCTTCTGATTACAAAAGAATTCCACCTTGTTCATGTACTAGTATTCTTAATTGAACTAGCATTTAGAGTGTGTTGTTCTTTGATTAAAATGAACAGAAGGTATAGTTGCTAACA

Coding sequence (CDS)

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCCGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCAGGCTGTGAGAATTGCCCCTTTTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAATATGCACCACCAAAACGTGTTTAA
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009287Spt4
IPR016046Transcription initiation Spt4-like
IPR022800Spt4/RpoE2_Znf
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0032786positive regulation of DNA-templated transcription, elongation
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0032786 positive regulation of DNA-templated transcription, elongation
biological_process GO:0008150 biological_process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006325 chromatin organization
biological_process GO:0006397 mRNA processing
biological_process GO:0034243 regulation of transcription elongation from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
cellular_component GO:0032044 DSIF complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0033588 Elongator holoenzyme complex
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0000993 RNA polymerase II core binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53755melon EST collection version 4.0transcribed_cluster
MU58104melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023752T4MELO3C023752T4mRNA
MELO3C023752T1MELO3C023752T1mRNA
MELO3C023752T2MELO3C023752T2mRNA
MELO3C023752T3MELO3C023752T3mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53755MU53755transcribed_cluster
MU58104MU58104transcribed_cluster