CSPI03G20330 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGAGATGGGGAATGAAAACAAAAGGAAGAAATGCATTTTGGAATCTTGGATTAGAGCTATAATATTAGGATGTTTTGGTTAAATTTCATTTTCTCATCCTTCCTCCCGCGGTCAGTACTAATATTCGTTCCCTAGTGTGCACTGCCTCCGTGACGCCGCCCGCCGGACATTTTTTTTCCCTCGAACCGCTGCCTTGCCTCCGCCCCCGCCGTCCATACATTCAAGTAACTTCTTCATTTATCAAAAGTTTTCTCTTCCCCCTTCTAAAGTGGGGGATTCTCACCGACAATATTTGTTGGAGTAATCAGCAGAAGGTTCAAGTAGGTGATTGGAAACTATCAGGGAGGGATCGGAAGTAATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTGCAGTCTCCTTTTTTCAAGAATCTTTGGTTGTTCTTATAAATGCTTGCATTCAGTATCTAATAGTTTAAGATCTTTGAACTTCTCGAATTGTATGTTATATTGAGTATTGGTCATCCATACAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGTTTGTATAATTTTCTATTCCTTTATTCTCTTTTTGTTTTACTGTTTGTCGTCTTCTTCTGGAATTAACGCTCCTATCCAACGCGGATAATGTTAGCTTAAGCTTTTGGTGATTTAATAATGATATTAGAGCGTGTGGTTTAGGAGAACTTGCTTTCGAACTCCTGCAATGTTATTTACTCTTCAATTAATATTCGTTTTAACTTGGGAGATGACACAATATTAAATTTACTAAGGTATTGGGTCAATCAATGATTTAATACATAGAAGGTTGGGCATGACATATAATTTCAGTTGTTTCAATGGACATCTACCAAATTTCTATATGAAACCTTAAAAGATTCAATCAATATTAAAAGAAGTAATATTCAGCTTATGATCATGCTGTATTTCACTTACATTTGTTCTGCCCTTTTCCATATCTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCCCTTTCTTCTTTCTTACCCCCCTCCCATTAGTTTTTGCAACTAAAGATGTTTTTGTCTAAGAATTGACTAACCTGAGTACTTGTTATTCTAGTAGCAGATAACGTCTTCCTGTCTGACTTTTTAACTTCTGTTGGCCAAGTTTCAACTTTCAAGAACGTCCGTACATAGAACAAAAGAAAGGATGTCACTTTCATTCTTTAATATATAAATTTGTCCATATCCCGAGCCTAATATTAGACCATGAACAGTTGTTCGTTTTAAGCTTGGACCTGTGCACTTTCTGACATCCTTTGAATTATAATTGTAAGAAACTGCTTCGTGGCTGCTGAACGCCTAAAACTGACCAATATCCCAAATTTTTCAGTGAATAATGTATTGCATGGGTTAGTGTTTAGTTCACTTATTTGTATGCTTGATGAAATGGTTGGCAACTTGGAGCAATGACCTTTATTTTTATTATAAGATCATTGTTGATAGAATTGTTGAGTAACCTGGAATTTATGAAACCAGCATTTCTGCTTCTTTTTTTCCTCTTCTTTGAATTTTGTTGTCTTATCTACCTTTCTTTTCACCTAATTTTAATAATTCATTAAATTTCTTGCTTGTAACCTTTTAGCTTTGTGTATAATTTGTTAGCTCTATAGTAGCATTTGGCATTTGATTTTCAGAATTTATATTTCCTTCCAATCTCGTAGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGGTTTGCAACCAATCATTTCCTAGCATAAATTTCATCATGACACGTTTCAGTCTTCTGTGTTCATCTTGTACCAAAGCCATCAGGAACATCAATGCCCATTGGTCAATTGTTTCTGGTCAAGGGTTTTTCATTGATTTACTAATCTTATTTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTCTGTTTTTGTTTTTTATTCTTTGTGTTGTTTTAAACTATCAATAAATTCAGCGGCTTCTCTTGCCTAACTTCAAAAACTAAACATCAGGTTTGGGAAATTGGTACATGTGGAATCGGAGGACATCTGGTCCCTTGGGTTGGGAACAACCCTTAGTCTTTCCATTTAAAACAGTACAGTTGGCTTGGCTTGGCTTATTTTTAAAAATTGGAGAGGATTCACTTACCCTTGTATATACTTCTATCTCTCTTGGCGGTAGACAGTTTCTCACAAAGAAAAACATAAACAAAGATTTTTCACTTCAACTGGTCCATGGGAAAGTTGGACTACTGTAGAAGGACCCAACCTCCTAGATTTCAATTTTCATGGTCATATAATTTGAGGCATGAATTGTTGAGCAACATCCCATTGACCCAAACACAGTTTTTCTTCAAATGTACTTGTTTTTCCATGCCTTGGTTCTCATCTCCTTATAAATTCAAGCCTTCTCATATGCCTCGTTTCATAAGTTATTGATCTTTTTCAACTGTTACAATCCCTTCTCGTCGACTAGTTACAAACTCATTGCATTCTCATATGCCTTACCTTCCAACTCTACTAGAAGGTGGCATGTTTTGCCAAAAACTACGTGTAAAGAGAGATCCCATGTGGACTTTTCAATGCAGTCCTACATGCCTACAATGCACCATTTAATTTCTTTGTGCAATCTTTGAGTGAATAGTCCATTGTCTTCTGAAGTATACCTTTACCTCTCTGTTGCAAAATTCTATTTGTCAATTTGGTTGAGAGTGAAAGGCTAGGGTTATCCTATGTCTTACCCTACATTTAGCCAAGAGTGTGCAAAGATTACCTTGCTTTCATTTGTAGGAGTATTGCCTTTACCCATGACCCATGTTGACACGTGATCAATAGCAAAATGTATTTGTTGTTGCTTGAGGATGGAAAGGCCCTATGAATTCATTCCAAACCCATTGAATAATTTCGCTTCTGAATGTCCTGCAAGAACATTTCATCTTCTCTAGAGATATTTCTTGTTGTTGACATTTTTCATGTCCTGTTAAAAGAATAAATTTCAAATACCGAGAATTTATTCTTAGATAACTCCGCATTTTTTTACCATCTCGTAAAAGATCATCATTGTGCACCTTTGTGAATGTGATGGATGCGTAGTGTATGACATTCTTCTAAATGCAAAAATACCATATTGGATGTGGACGGTCTCCTCTGGAGCTAATTCTAATTGATGATATTGATAGGACTGCGATTAGATTATTATAAAGGCATATTGGTAATTAGTTTGGGAAGTTTGTTATGGAGTTTTGTTGTAATTAACGGCTAGGGAATGAGAAAGGTAGGCAATATTGTGGTGAGTGAAATAGGGCTTGAGAGTAATTTCAAGAGGGAATGGTTGGCATACCTTGATTACAAATGTGACTTACATGGAGATTTATCTTATAAAGACTTCTCTAATTTGATTGATTTAAAGAGGATAAAATGGTTAATGGAAGATGAAGCTTTTATTGTGTCAAATGATGGTAAGTTGAATGAAGTAAAGGATTGTCCAAAAGTTCCCTTAGAGCATCAGTTACTCCATACTTTGAATGACTCAGATGACTATGGTCATGATATAGGTACTCCTTGTCTTCCCATGGATGATTTTTCTCCACAAGAGGAGCCTCCAGATGACATTAAGCATTCATCATCTCTTCAACCTGCCCTGAATTCAAACAGTGTGAAGCCAAGGTTCATGAAAGCTTTCCCTCTGCATTATTCTCAAAAGAAAGAAGTTCTCAGTGTTCTTGACTGCAAAGAAAGAAATTCCCACGCTTTAGAAAAATCTTGTATTTATCTTTTGGTTTCTTCATTTGTTGGCTTCACAACAACACCAGTCTTTGGATCCTGACAAGTTCTTTAAGCAATCTTTTATCTCTCCCCGGATAAGATGTTTATTAAAGGGGTATCCAATCCCCTTTCTCCTAAAGAAATTTTATCTTCTTCTGATGATGGTGAGGAATCAATTGTAAGCATGAGGAGTGAGGAAGTGAATTTCCTATGGAGAAATACTGCAACAGGATTTACTATTGAAGGATATACTTGCAGAAAGCTGTTATCATATTTTTTGCAAATGAAGACATTGGATCGCTTAGTTCAAAGTCTTTTTGCTGGAGCATCACCAATGTTTTCTCTGTATGTTCCTTGCAAGTTAATGTTTTTAGTAAGGTTTGTGGTCTTCAACTGCAAATATTCCTTCTAGATCTCCAGGAGTTATAGTTTAACAGTGTTTACCTTGAGTTTCTTATGGCCCTTTTTGCCTTGAGGTCTCATTTCCATTTCTGAAGGACTTCTTTTAGAACTTTTGGTCTTTTGCTGTGCAATCTTGTCAGTTTTTTGGTTTGACGTTTCTCTTTGTTTGGGCTGGTATGTTTTGGTTCAATTTGTCTCTTAAGAGTCATATGGGGCTCTCTAAGTCTTTTTTGTGCTTCTTAGTTGAAGGTTTTTCTGTCTTATTTGATTTGTATTCTTCATCAGTTTGTTTGCTTCTTATTTTTGTCCTTTGGTTGGGTGTCGTGTATTTTGGAGCATTAGTGTCTTTCCATTTTATTAATAAAGTTTTGTTTCCTTTTCAAAATTAAATAAGAAAGAAAGAAAAGAAAAGTGATATCTTGAGTAACCATCCAGAAGACATTAGTGTTTATGTTGTGCCAATCAGTCTAACATTTGGTCAATAGAGGGCAAGGGTTTCCTTCTCTAACTAATAATTTATGCAGCTTCCCCAATCAATGATTGTTCTTGCCAAGATCAACTCATTATCTCGTTCTCTACCACCGTTGCCCGTCCTTTCTTTATTACCACATGTACTAGACTCATCCATTTCAAAACTTCACCCCTATTCCCTGAACCTCTTTTGCTTTCTGGTTGATGAGTCTCCTTTGCACTTCAATTGATGGTGTAATCCCTTCTTCTCATAAATTTTTGTGATACACAATGAAGAGCTCGTACCGTTTGTACTTTCAAAAGACCATCAGACTGCCTGTTTATGTTTCCTATTTGCATGCAACAACCGTTTTTTCTCTGATTAGACAACTCTACTGAGGTGATTGTGTTAGGGTCCCAATTCTATTGAAATATTCCAGAAGGGGAAAAAAGGGTAACATGAGTGAGAGTTGGTTATGGTGGGGACCACTAGGGCTGTATGGGAGTGAGGAGTGGTCAGTCTATATATAGAATAGGATGTTATTTTCTAGTGTAAGCTTTTGGTAAGTAAACCAGTAGTCTTGAGCAAAGGGAGGTTAAGTTTCTCTGCACTCCAAGGAATTGTAGCCTCCGGGCAACTCTTTGATGTTAGTACAAATATTAGTAAGGGATACCTTACAGATTGCTGAAAGAGTAGACTCTTCACTCAAGATATATATCTCAAATGAGATGGTTGCATGTTTTTGGGTTTCATCAGTTTTATTAATATCCAAAACTATTGATGATGTAACTGGGTATAACGAAGTGGTATTGCAGAGTAGCTTTACAAGTTCTATGTCCTGGAGGGCTGGGAGGAATTTTTTTCAAGTCAATTGATAGTCTTTGAAATCTAACTATTAGTGCCTGAAGATGAAATTTGTGGTGTCGTATCGAGCACCTGAAATGTTTCATTTTGCCTTCATTTTACCATTGCTGTCTGAGTACTACAACATGACTTTGTAAAGTTGTAATTCTTATATATTCTAATGCTATTGTTTTTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAATATGCACCACCAAAACGTGTTTAACCTTATGTTAATCTCTAGTTTATTCTGATTACAAAGAATTCCACCTTGTTCACGTACTAGTATTCTTAATTGAACTAGCATTTAGTGTGTGTTGTTCTTTGATTGAAATGAACAGAAGGTATAGTTGCTAACACCTTACATTCTACATTTTTATTTGCTTCCCCTTGCATATCTTTTTTGCCTATC ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAATATGCACCACCAAAACGTGTTTAA ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAATATGCACCACCAAAACGTGTTTAA
BLAST of CSPI03G20330 vs. Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 2.6e-58 Identity = 99/116 (85.34%), Postives = 110/116 (94.83%), Query Frame = 1
BLAST of CSPI03G20330 vs. Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=2 SV=3) HSP 1 Score: 220.3 bits (560), Expect = 1.1e-56 Identity = 94/116 (81.03%), Postives = 108/116 (93.10%), Query Frame = 1
BLAST of CSPI03G20330 vs. Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 8.2e-20 Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
BLAST of CSPI03G20330 vs. Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19 Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 1
BLAST of CSPI03G20330 vs. Swiss-Prot
Match: SPT4A_MOUSE (Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.8e-19 Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 1
BLAST of CSPI03G20330 vs. TrEMBL
Match: A0A0A0L9Q3_CUCSA (Transcription elongation factor SPT4 homolog OS=Cucumis sativus GN=Csa_3G258160 PE=3 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 1.7e-64 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
BLAST of CSPI03G20330 vs. TrEMBL
Match: V4U747_9ROSI (Transcription elongation factor SPT4 homolog OS=Citrus clementina GN=CICLE_v10017231mg PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 7.9e-62 Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1
BLAST of CSPI03G20330 vs. TrEMBL
Match: A0A067GP01_CITSI (Transcription elongation factor SPT4 homolog OS=Citrus sinensis GN=CISIN_1g046522mg PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 7.9e-62 Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1
BLAST of CSPI03G20330 vs. TrEMBL
Match: B9RGK4_RICCO (Transcription elongation factor SPT4 homolog OS=Ricinus communis GN=RCOM_1454570 PE=3 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 3.9e-61 Identity = 110/116 (94.83%), Postives = 111/116 (95.69%), Query Frame = 1
BLAST of CSPI03G20330 vs. TrEMBL
Match: A0A0D2TNV3_GOSRA (Transcription elongation factor SPT4 homolog OS=Gossypium raimondii GN=B456_012G136700 PE=3 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 1.1e-60 Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 1
BLAST of CSPI03G20330 vs. TAIR10
Match: AT5G63670.1 (AT5G63670.1 SPT4 homolog 2) HSP 1 Score: 225.7 bits (574), Expect = 1.5e-59 Identity = 99/116 (85.34%), Postives = 110/116 (94.83%), Query Frame = 1
BLAST of CSPI03G20330 vs. TAIR10
Match: AT5G08565.1 (AT5G08565.1 Transcription initiation Spt4-like protein) HSP 1 Score: 220.3 bits (560), Expect = 6.2e-58 Identity = 94/116 (81.03%), Postives = 108/116 (93.10%), Query Frame = 1
BLAST of CSPI03G20330 vs. NCBI nr
Match: gi|659123238|ref|XP_008461561.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]) HSP 1 Score: 253.1 bits (645), Expect = 2.4e-64 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
BLAST of CSPI03G20330 vs. NCBI nr
Match: gi|802537760|ref|XP_012065876.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]) HSP 1 Score: 246.1 bits (627), Expect = 3.0e-62 Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 1
BLAST of CSPI03G20330 vs. NCBI nr
Match: gi|567912375|ref|XP_006448501.1| (hypothetical protein CICLE_v10017231mg [Citrus clementina]) HSP 1 Score: 244.2 bits (622), Expect = 1.1e-61 Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1
BLAST of CSPI03G20330 vs. NCBI nr
Match: gi|255544187|ref|XP_002513156.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Ricinus communis]) HSP 1 Score: 241.9 bits (616), Expect = 5.6e-61 Identity = 110/116 (94.83%), Postives = 111/116 (95.69%), Query Frame = 1
BLAST of CSPI03G20330 vs. NCBI nr
Match: gi|823256063|ref|XP_012460686.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 isoform X1 [Gossypium raimondii]) HSP 1 Score: 240.4 bits (612), Expect = 1.6e-60 Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|