Csa3G258160.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G258160.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTranscription elongation factor SPT4-like protein; contains IPR016046 (Transcription initiation Spt4-like), IPR022800 (Spt4/RpoE2 zinc finger)
LocationChr3 : 16039015 .. 16044968 (-)
Sequence length351
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTGCAGTCTCCTTTTTTCAAGAATCTTTGGTTGTTCTTATAAATGCTTGCATTCAATATCTAATAGTTTAAGATCTTTGAACTTCTCGAATTGTATGTTATATTGAGTATTGGTCATCCATACAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGTTTGTATAATTTTCTATTCCTTTATTCTCTTTTTGTTTTACTGTTTGTCGTCTTCTTCTGGAATTAACGCTCCTATCCAACGTGGATAATGTTAGCTTAACCTTTTGGTGATTTAATATGATATTAGAGCGTGTGGTTTAGGAGAACTTGCTTTCGAACTCCTGCAATGTTATTTACTCTTCAATTAATATTCGTTTTAACTTGGGAGATGACACAATATTAAATTTACTAAGGTATTGGGTCAATCAATGATTTAATACATAGAAGGTTGGGCATGACATATAATTTCAGTTGTTTCAATGGACATCTACCAAATTTCTATATGAAACCTTAAAAGATTCAATCAATATTAAAAGAAGTAATATTCAGCTTATGATCATGCTGTATTTCACTTACATTTGTTCTGCCCTTTTCCATATCTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCCCTTTCTTCTTTCTTACCCCCCTCCCATTAGTTTTTGCAACTAAAGATGTTTTTGTCTTAGAATTGACTAACCTGAGTACTTGTTATTCTAGTAGCAGATAACGTCTTCCTGTCTGACTTTTTAACTTCTGTTGGCCAAGTTTCAACTTTCAAGAACGTCCGTACATAGAACAAAAGAAAGGATGTCACTTTCATTCTTTAATATATAAATTTGTCCATATCCCGAGCCTAATATTAGACCATGAACAGTTGTTCGTTTGAAGCTTGGACCTGTGCACTTTCTGATATCCTTTGAATTATAATTGTAAGAAACTGCTTCGTGGCTGCTGAACGCCTAAAACTGACCAATATCCCAAATTTTTCAGTGAATAATGTATTGCATGGGTTAGTGTTTAGTTCACTTATTTGTATGCTTGATGAAATGGTTGGCAACTTGGAGCAATGACCTTTATTTTTATTATAGGATCATTGTTGATAGAATTGTTGAGTAACCTGGAATTTATGAAACCAGCATTTCTGCTTCTTTTTTTCCTCTTCTTTGAATTTTGTTGTCTTATCTACCTTTCTTTTCACCTAATTTTAATAATTCATTAAATTTCTTGCTTGTAACCTTTTAGCTTTGTGTATAATTTGTTAGCTCTATAGTAGCATTTGGCATTTGATTTTCAGAATTTATATTTCCTTCCAATCTTGTAGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGGTTTGCAACCAATCATTTCCTAGCATAAATTTCATCATGACACGATTCATTCTTCTGTGTTCATCTTGTACCAAAGCCATCAGGAATATCAATGCCCATTGGTCAATTGTTTCTGGTCAAGGATTTTTCATTGATTTACTAATCTTATTTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTCTGTTTTTGTTTTTTATTCTTTGTGTTGTTTTAAACTATCAATAAATTCAGCGGCTTCTCTTGCCTAACTTCAAAAACTAAACATCAGGTTTGGGAAATTGGTACATGTGGAATTGGAGGACATCTGGTCCCTTGGGTTGGGAACAACCCTTAGTCTTTCCATTTAAAACAGTACAGTTGGCTTGGCTTGGCTTATTTTTAAAAATTGGAGAGGATTCACTTACCCTTGTATATACTTCTATCTCTCTTGGCGGTAGACAGTTTCTCACAAAGAAAAACATAAACAAAGATTTTTCACTTCAACTGGTCCATGGGAAAGTTGGACTACTGTAGAAGGACCCAACCTCCTAGATTTCAATTTTCATGGTCATATAATTTGAGGCACGAATTGTTGAGCAACATCCCATTGACCCAAACACAGTTTTTCTTCAAATGTACTTGTTTTTCCATGCCTTGGTTCTCATCTCCTTATAAATTCAAGCCTTCTCATATGCCTCGTTTCATAAGTTATTGATCTTTTTCAACTGTTACAATCCCTTCTCGTCGACTAGTTACAAACTCATTGCATTCTCATATGCCTTACCTTCCAACTCTACTAGAAGGTGGCATGTTTTGCCAAAAACTACGTGTAAAGAGAGATCCCATGTGGACTTTTCAATGCAGTCCTACATGCCTACAATGCACCATTTAATTTCTTTGTGCAATCTTTGAGTGAATAGTCCATTGTCTTCTGAAGTATACCTTTACCTCTCTGTTGCAAAATTCTATTTGTCAATTTGGTTGAGAGTGAAAGGCTAGGGTTATCCTATGTCTTACCCTACATTTAGCCAAGAGTGTGCAAAGATTACCTTGCTTTCATTTGTAGGAGTATTGCCTTTACCCATGACCCATGTTGACACGTGATCAATAGCAAAATGTATTTGTTGTTGCTTGAGGATGGAAAGGCCCTATGAATTCATTCCAAACCCATTGAATAATTTCGCTTCAGAATGTCCTGCAAGAACATTTCATCTTCTCTAGAGATATTTCTTGTTGTTGACATTTTTCATGTCCTGTTAAAAGAATAAATTTCAAATACCGAGAATTTATTCTTAGATAACTCCGCATTTTTTTACCATCTCGTAAAAGATCATCATTGTGCACCTTTGTGAATGTGATGGATGCGTAGTGTATGGCATTCTTCTAAATGCAAAAGTACCATATTGGATGTGGACGGTCTCCTCTGGAGCTAATTCTAATTGATGATATTGATAGGACTGCGATTAGATTATTATAAAGGCATATTGGTAATTAGTTTGGGAAGTTTGTTATGGAGTTTTGTTGTAATTAATGGCTAGGGAATGAGAAAGTTAGGCAATATTGTGGTGAGTGAAATAGGGCTTGAGAGTAATTTCAAGAGGGAATGGTTGGCATACCTTGATTACAAATGTGACTTACATGGAGATTTATCTTATAAAGACTTCTCTAATTTGATTGATTTAAAGAGGATAAAATGGTTAATGGAAGATGAAGCTTTTATTGTGTCAAATGATGGTAAGTTGAATGAAGTAAAGGATTGTCCAAAAGTTCCCTTAGAGCATCAGTTACTCCATACTTTGAATGACTCAGATGACTATGGTCATGATATAGGTACTCCTTGTCTTCCCATGGATGATTTTTCTCCACAAGAGGAGCCTCCAGATGACATTAAGCATTCATCATCTCTTCAACCTGCCCTGAATTCAAACAGGGTGAAGCCAAGGTTCATGAAAGCTTTCCCTCTGCATTATTCTCAAAAGAAAGAAATTCTCAGTGTTCTTGACTGCAAAGAAAGAAATTCCCACGCTTTAGAAAAATCTTGTATTTATCTTTTGGTTTCTTCATTTGTTGGCTTCACAACAACACCAGTCTTTGGATCCTGACAAGTTCTTTAAGCAATCTTTTATCTCTCCCCGGATAAGATGTTTATTAAAGGGGTATCCAATCCCCTTTCTCCTAAAGAAATTTTATCTTCTTCTGATGATGGTGAGGAATCAATTGTAAGCATGAGGAGTGAGGAAGTGAATTTCCTATGGAGAAATACTGCAACAGGATTTACTATTGAAGGATATACTTGCAGAAAGCTGTTATCATATTTTTTGCAAATGAAGACATTGGATCGCTTAGTTCAAAGTCTTTTTGCTGGAGCATCACCAATGTTTTCTCTGTATGTTCCTTGCAAGTTAATGTTTTTAGTAAGGTTTGTGGTCTTCAACTGCAAATATTCCTTCTAGATCTCCAGGAGTTATAGTTTAACAGTGTTTACCTTGAGTTTCTTATGGCCCTTTTTGCCTTGAGGTCTCATTTCCATTTCTGAAGGACTTCTTTTAGAATTTTTGGTCTTTTGCTGTGCAATCTTGTCAGTTTTTTGGTTTGACGTTTCTCTTTGTTTGGGCTGGTATGTTTTGGTTCAATTTGTCTCTTAAGAGTCATATGGGGCTCTCTAAGTCTTTTTTGTGCTTCTTAGTTGAAGGTTTTTCTGTCTTATTTGATTTGTATTCTTCATCAGTTTGTTTGCTTCTTATTTTTGTCCTTTGGTTGGGTGTCGTGTATTTTGGAGCATTAGTGTCTTTCCATTTTATTAATAAAGTTTTGTTTCCTTTTCAAAATTAAATAAGAAAGAAAGAAAAGAAAAGTGATATCTTGAGTAACCATCCAGAAGACATTAGTGTTTATGTTGTGCCAATCAGTCTAACATTTGGTCAATAGAGGGCAAGGGTTTCCTTCTCTAACTAATAATTTATGCAGCTTCCCCAATCAATGATTGTTCTTGCCAAGATCAACTCATTATCTCGTTCTCTACCACCGTTGCCCGTCCTTTCTTTATTACCACATGTACTAGACTCATCCATTTCAAAACTTCACCCCTATTCCCTGAACCTCTTTCGCTTTCTGGTTGATGAGTCTCCTTTGCACTTCAATTGATGGTGTAATCCCTTCTTCTCATAAATTTTTGTGATACACAATGAAGAGCTCGTACCGTTTGTACTTTCAAAAGACCATCAGACTGCCTGTTTATGTTTCCTATTTGCATGCAACAACCGTTTTTTCTCTGATTAGACAACTCTAATGAGGTGATTGTGTTAGGGCCCCAATTCTATTGAAATATTCCAGAAGGGGAAAAAAGGGTAACATGAGTGAGAGTTGGTTATGGTGGGGACCACTAGGGCTGTATGGGAGTGAGGAGTGGTCAGTCTATATATAGAATAGGATGTTATTTTCTAGTGTAAGCTTTTGGTAAGTAAACCAGTAGTCTTGAGCAAAGGGAGGTTAAGTTTCTCTGCACTCCAAGGAATTGTAGCCTCCGGGCAACTCTTTGATGTTAATACAAATATTAGTAAGGGATACCTTACAGATTGCTGAAAGAGTGGACTCTTCACTCAAGATATATATCTCAAATGAGATGGTTGCATGTTTTTGGGTTTCATCGGTTTTATTAATATCCAAAACTATTGATGATGTAACTGGGTATAACGAAGTGGTAGTGCAGAGTAGCTTTACAAGTCCTATGTCCTGGAGGGCTGGGAGGAATTTTTTCAAGTTAATTAATAGTCTTCGAAATCTAACTATTAGTGCCTGAAGATGAAATTTGTGGTGTCGTATCGAGCACCTGAAATGTTTCATTTTGCCTTCATTTTACCTTCATTTTACCATTGCTGTCTGAGTACTACAACATGACTTTGTAAAGTTGTAATTCTTATATATTCTAATGCTATTGTTTTTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAGTATGCACCACCAAAACGTGTTTAA

mRNA sequence

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAGTATGCACCACCAAAACGTGTTTAA

Coding sequence (CDS)

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGCGTGCAGTATGCACCACCAAAACGTGTTTAA

Protein sequence

MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV*
Homology
[Close]
BLAST of Csa3G258160.1 vs. Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 4.9e-57
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]
BLAST of Csa3G258160.1 vs. Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=2 SV=3)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-55
Identity = 94/116 (81.03%), Postives = 106/116 (91.38%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]
BLAST of Csa3G258160.1 vs. Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.1e-19
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 1 

Query: 8  IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVECTTPNFNGIISVM 67
          +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M
Sbjct: 6  VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMM 65

Query: 68 DPARSWAARWLRIGRFVPGCYTLAVSEALP 97
           P  SW A+W RIG F PG Y + V+  LP
Sbjct: 66 SPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94

[Close]
BLAST of Csa3G258160.1 vs. Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 1 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of Csa3G258160.1 vs. Swiss-Prot
Match: SPT4A_MOUSE (Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 1 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of Csa3G258160.1 vs. TrEMBL
Match: A0A0A0L9Q3_CUCSA (Transcription elongation factor SPT4 homolog OS=Cucumis sativus GN=Csa_3G258160 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.2e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Csa3G258160.1 vs. TrEMBL
Match: V4U747_9ROSI (Transcription elongation factor SPT4 homolog OS=Citrus clementina GN=CICLE_v10017231mg PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-60
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKR 116
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKR
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115

[Close]
BLAST of Csa3G258160.1 vs. TrEMBL
Match: A0A067GP01_CITSI (Transcription elongation factor SPT4 homolog OS=Citrus sinensis GN=CISIN_1g046522mg PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-60
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKR 116
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKR
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115

[Close]
BLAST of Csa3G258160.1 vs. TrEMBL
Match: B9RGK4_RICCO (Transcription elongation factor SPT4 homolog OS=Ricinus communis GN=RCOM_1454570 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 7.4e-60
Identity = 110/116 (94.83%), Postives = 111/116 (95.69%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ LCEEERVQY PPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQALCEEERVQYNPPKRV 116

[Close]
BLAST of Csa3G258160.1 vs. TrEMBL
Match: A0A0D2TNV3_GOSRA (Transcription elongation factor SPT4 homolog OS=Gossypium raimondii GN=B456_012G136700 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-59
Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDED+ERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDNERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEE  VQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEVHVQYVPPKRV 116

[Close]
BLAST of Csa3G258160.1 vs. TAIR10
Match: AT5G63670.1 (AT5G63670.1 SPT4 homolog 2)

HSP 1 Score: 221.5 bits (563), Expect = 2.8e-58
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]
BLAST of Csa3G258160.1 vs. TAIR10
Match: AT5G08565.1 (AT5G08565.1 Transcription initiation Spt4-like protein)

HSP 1 Score: 216.1 bits (549), Expect = 1.2e-56
Identity = 94/116 (81.03%), Postives = 106/116 (91.38%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]
BLAST of Csa3G258160.1 vs. NCBI nr
Match: gi|659123238|ref|XP_008461561.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 4.6e-63
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Csa3G258160.1 vs. NCBI nr
Match: gi|802537760|ref|XP_012065876.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas])

HSP 1 Score: 241.9 bits (616), Expect = 5.6e-61
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYIPPKRV 116

[Close]
BLAST of Csa3G258160.1 vs. NCBI nr
Match: gi|567912375|ref|XP_006448501.1| (hypothetical protein CICLE_v10017231mg [Citrus clementina])

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-60
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKR 116
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKR
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115

[Close]
BLAST of Csa3G258160.1 vs. NCBI nr
Match: gi|255544187|ref|XP_002513156.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Ricinus communis])

HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59
Identity = 110/116 (94.83%), Postives = 111/116 (95.69%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ LCEEERVQY PPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQALCEEERVQYNPPKRV 116

[Close]
BLAST of Csa3G258160.1 vs. NCBI nr
Match: gi|823256063|ref|XP_012460686.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 isoform X1 [Gossypium raimondii])

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-59
Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDED+ERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDNERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEE  VQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEVHVQYVPPKRV 116

The following BLAST results are available for this feature:
BLAST of Csa3G258160.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SPT42_ARATH4.9e-5785.34Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63... [more]
SPT41_ARATH2.1e-5581.03Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08... [more]
SPT4H_DANRE9.1e-1948.89Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1[more]
SPT4H_PONAB2.6e-1841.35Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1[more]
SPT4A_MOUSE3.4e-1841.35Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1[more]
BLAST of Csa3G258160.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9Q3_CUCSA3.2e-63100.00Transcription elongation factor SPT4 homolog OS=Cucumis sativus GN=Csa_3G258160 ... [more]
V4U747_9ROSI1.1e-6095.65Transcription elongation factor SPT4 homolog OS=Citrus clementina GN=CICLE_v1001... [more]
A0A067GP01_CITSI1.1e-6095.65Transcription elongation factor SPT4 homolog OS=Citrus sinensis GN=CISIN_1g04652... [more]
B9RGK4_RICCO7.4e-6094.83Transcription elongation factor SPT4 homolog OS=Ricinus communis GN=RCOM_1454570... [more]
A0A0D2TNV3_GOSRA2.1e-5993.97Transcription elongation factor SPT4 homolog OS=Gossypium raimondii GN=B456_012G... [more]
BLAST of Csa3G258160.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G63670.12.8e-5885.34 SPT4 homolog 2[more]
AT5G08565.11.2e-5681.03 Transcription initiation Spt4-like protein[more]
BLAST of Csa3G258160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123238|ref|XP_008461561.1|4.6e-63100.00PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo][more]
gi|802537760|ref|XP_012065876.1|5.6e-6195.69PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas][more]
gi|567912375|ref|XP_006448501.1|1.6e-6095.65hypothetical protein CICLE_v10017231mg [Citrus clementina][more]
gi|255544187|ref|XP_002513156.1|1.1e-5994.83PREDICTED: transcription elongation factor SPT4 homolog 2 [Ricinus communis][more]
gi|823256063|ref|XP_012460686.1|3.1e-5993.97PREDICTED: transcription elongation factor SPT4 homolog 2 isoform X1 [Gossypium ... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009287Spt4
IPR016046Transcription initiation Spt4-like
IPR022800Spt4/RpoE2_Znf
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0032786positive regulation of DNA-templated transcription, elongation
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032786 positive regulation of DNA-templated transcription, elongation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006448 regulation of translational elongation
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003746 translation elongation factor activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G258160Csa3G258160gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G258160.1Csa3G258160.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G258160.1.cds5Csa3G258160.1.cds5CDS
Csa3G258160.1.cds4Csa3G258160.1.cds4CDS
Csa3G258160.1.cds3Csa3G258160.1.cds3CDS
Csa3G258160.1.cds2Csa3G258160.1.cds2CDS
Csa3G258160.1.cds1Csa3G258160.1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009287Transcription initiation Spt4PIRPIRSF025023Spt4coord: 2..116
score: 1.9
IPR016046Transcription initiation Spt4-likePANTHERPTHR12882SUPPRESSOR OF TY 4coord: 1..115
score: 4.5
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 16..92
score: 8.9
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 16..92
score: 2.9