Cla97C05G094030 (gene) Watermelon (97103) v2

Overview
NameCla97C05G094030
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionTranscription elongation factor SPT4 homolog
LocationCla97Chr05 : 14433643 .. 14439044 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTTTAGTCTCCTGTTTTCAAGAAGCTTTGGTTGTCCTTGTGAATGCTTGCGTTCAATCTCTAATTGGTCATGCATACAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGTTTGTATAATTTTCTTCTCCTGTATTCTTTTTTTGTGTTACTGTTTGTCATTTTGTTCAAACTAGTTTGCTTCCGTCGTGCCTTGGATAGAAGTTTGGACATGACATATAATTTTCAGTTATTTCAATGAAAATCTACAAAATTTCTACAGGAAACCTAAAAATATTCAATCAATATTAAAAGAAGTAATATTCAGCTTATGATCATACTGTATTTCAGTTAGATTTGTTGTACCCTTTTGCATATCTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCTCTTTCTTCTTTCTTACTCCCCTCCCATTATTGTTTTGTAACTAAACATGTTGCTTTTGACAAAGAATTGACTAACCTTAGTACTCGTTATTCAATTAGCAGTTAATATCTTCCTCTCTGACTTATTAATTTCTGTGGCGAAGTTTCAACTTTCAAGAACATTCGTAATTTTGTAGATCGAACAAAAGAAAGGATGTCATTTTCATTTTTCAACATAGAAATCTGTCCATTTATTCCGAGCCTAACATTAGGACAGTGAACAATTTTTCATTTTAAGGTCCTATGCACTTGCTGATATCCTTTGAATTAAATGGTAAGAAACTGCTATGTTGCTGCTGAACGCCTGAAAACTGACCAATATCTTGAATTTTTGTTAGTGGATAATGAATTGCATGCGCTATAGTGTTTAGTTTACTTATATGTATTGTCGAATGAAAAGTTTAGCAATTTGGAGCAATGGCTTTTATTTTTATTATAAGATCAACGTTGATACAATTGTTGAGTAATACCCGGAATTGATTGAACCGACAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACCTCTTGTTTGAATTTTGTTGTATTAGCTACCTTTCATTTCACCTAATTTTAATCATTCATTAAATTTCTTGCTTGTAACCTTTTAGTTTTGTGTGTAATTTGTTTGCTCTATAGTAGCGTTTGGCATTTCAAATTTATATTTCCTGCCAATCTTGCAGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGGTTTGCAACCAATCATTACGTAGCATAAATTTCACCATGACACATTTACATGTTTCATTCTTCTGTGTTCATCATGTACCAAAGCCATCAGGAATATCCATGCCCATTGGTCGATTGTTTCTGGTTAAGGATTTTTCATTTGATTTACTATTCTTATTTAATTCTCTCTCCCTCTCCCTTTCTCTATTGTTGTTCTTTTTCTTTGATTCTTTGTGTTGTTTGCTGTGACCTAATAATAAATTCAGTGGCTCCTCTTGCCTGTAACTTCAGAAACTAAACATCAGGATTGGGAAATTGGTGCATGTGGAATTGGAGGACATCTGGTCCCTTGGGTTGGGAACAACCCTTAAGACTTTCCATTTAAATCAGTATAGTTAGCTTAATTTTACAAGTTGGGGAGGATTCGGTTATCCTTGTATTTACTTTATTTCTCTTGATGATAGTTCAGTTTCTAACAAAGAAATACAAAAACAAAACAAAAGATTTTTCACTTCAACTGCTCCATGATCGAATTGGACTACTGTAAAAAAGGACCCAACCGCATAGATTTCAATTTTCATGGGCATAATTTGAGGCATGAGTTATTGAGCAACACCTATTGACCCGAACAAAGTTTATATTCTAATGTACTTGTGTTAGGAACCAAGGTAGTATGGGCTACCTTTGTCCCACATTGGTTAGAATGGGATGACCAATGTGGGACAAAGGTAGCCCATACTATTGAAGTGGAGAACCACACCCCAAAAGCTAGCTATTGAGGTGGGAGAGCCAAGCCACTTAAGTACCACATTGGTCATCCCATTCTAGCCAATGTGGGACAAAGGTAGCCCATACTACCTTGGTTCCTAACAACTTGTTGTGCCATGCCTTGGTTCTCTTCTTCTTATGAATTCAAGCATTCTCATATGCCTCATTTCATTATTTATTCATCTTCAACGGTTACAATCTCTTCTCATCGACTAGTTTTAAATCCATATTCAACAATTTCATTGTTCAATATGCCTTATGTTCCAACTCTACTAGAAGGTGGCATGTTTTGCCAAAAACTACATGTAAGGAGATATCACATGAGGAGTTCTGAATGCGGTCCTACATGCCTACAGACTACAATGCAACATTTAATTTCTTTGTCCAATCTTTGAGTGAATGGTGCATTGTCTTCTCAAGGATACCCTTCACCACTCTGTCGCTAAATTCCATTTGTTCATCTGTGTGAAGGTGATAAGCTAAAGTTATCCTATGTCTTACTCTACATTTAGCCAAGAGTGCTGCAAATTGCTGCTTGTTGGAGTGCAATCCTCCACTTATGATTGCTCATGGCATCCCAAATCTTGTAAAAATATTATTTTGAGAAAATTTTGGACTACCTTTCCTTCGTTTGTTGTAGTAGTAATTGCCTTCACCCATGTTGACACATGATCAATAGCAAAATGTTCTTATTGTTGTATGAAGATGGCACGGCCCCATGAAATTCATTCCCCACCCATCAAATAGTTTCACTTCAAAATGTTTTGGAAGAACATTTCATCCTAGAGATATTCCTTGTTCATTGACATTTGTCACGTGCTGGTAAAAAAGAAACTCCAAATACCAAGAAATCATCCTTAAATAACTTGATGCATTTTTGACCATGTCTAAAAAGATCACCATTGTGCACCTTTGTAATCTGATGGATGCCAAGAGTAGATCGAAGGGCATTCTACTAAATGCAAAAATGCCATACGGGATGTGGACGTAGTCTCCTCTTGATACTTCGTTGCAATTTCAATTTGATGATATTGATAGGAATGCTATTAGAGTGTTTTAAGGCGTATTAGTAATTAGCTAGAGGAGTTTGTTATGGAGTTTGGTTATGAATAAAGGCTAGGGGAATGAGGAAGGTAGGTAATCATGTGGTGAGTGAAATAGGCTTGAGAGTGATCTCAAAAGGACACGGTCCAAGTACCTTGATTATAGATTTTACTCACATGGTGATTTATCTTATAAAGACTTTTCTAATTCGATTGATTAAAGAGGATTAAAAAAGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTCGAGTGAAGTAGAAGATTGCCCAAAGGTTCTTTTAGAGCTTGATCGGCCCCTTACTTTGAATGACTTAGATGACTATGGTCCTAAGGTGAGGTACTCCTTTTGTTCCATAGATGATTTTTCTTACCAAGAAGAGCCTCCAGATGAAGTTAAGCATTTATGATCTCTTCAGCCCATTGTGAGTTCTAACATGGTGAAACTAACATGGTGAAACCAACGTTCATGAAAGCTTTCCCTCTACATTACCCTCGAAAGAAAGAAGTTTCTAGTGTTCTTGATTATGAAGAGAACATTTTGATGCTTTAGAAGAATCTTGAACTCATCTTTTGATTTCTTCATCAGTCGCTTCAAAATAGCATAAGTCTTTGGATCGACAAGCTCTTTAAGCAATCTTTTATCACGCTCCCTGGATCAGATGTTCAATTTATTAAATGGGCATCCAATCCCCTTCTCCTGAAGAAGTTTTATCTTCTTATGATGATGGTGACGAATCAATTGTCAGTGTGAGCAGTGAAGAGGTAGAATTTCCTATGGAGGAATCAATGCAACAAGAGTTATTATCAGAGGATATATTTGCAGAAATCTATAATCATGTTTTTGCAAGCGAATACATTAGATCACTTAGTTCAAAGCCCTTTGTTGCAGCATCACCAATGTCTTTTCCTTTGATTCCTGACAAATTCACTTTTTTTGTTAAGGTTTGTGATCTTCAACTGCGGGCAATTCCTTCTAGATCTCTGGGAGTTATAGCTCAATGGTGTTCACCTTGTTTGTTTAAAGCTATCAACACTTTTTTGGATTGTTCAAGGTTTTTTGGTCTTTCGCTGGGCAATCTTGTCAGTTTTTTGGTTTGACGTTTCTCTTTGTTTGGTTTGGTTTATTTTGGTTCGGTTTGTCTCTTAGATTGGGCTCTCTCTCTAAGTTTTTTGTGCTTCTTAGTTGAAGGTTTGTCGTCTTATTTGGCTTGTATTCTTCATCAATTTGTTTGCCTCTTATTTTGTATTCTAGTTGGACGTCTTGTATTTTGGAGCATTAGTCTCTTTTCATTTTATCAATAAAATTTCGGTTTCCTTTTTTTTAAAAAGGAAAGAAAAACAGATATCTTGAGTAACCATCCGGAAAACATTAGTATTTATGTCGTCCTAATCTGTCTAACCTTTGGTCAATAGAGGGCAAGGGTTGCCTTGTCTAACTACTTGTAATGTATGCAGCTTCTCCAACCAATGATTGTTCTTGCCGGGATCAACTCTTTATTCTCGTTCTCTACCACTGTTGTTCCTCCTTTCTTTGTTACCACATGTACTAGATCCACCCATCTCCAAACTTCACCCCGAATCTCTTTCATTTTCTGGTTGAGCCTCCTTTGCACTTCTATTAAGGCGTAATCCCCTCTTCTAATAAAATTTTGTGCATACACAATGAAGGGCTCATACCTTTTGTACTTGCCAAAGACCATCAGATTGCCTGTTTATGTTTCCTAATTGCACGCAACAACCATCTTTTCTCTTGAATAGACAACTCTACTGAGATGATTGCTGAATGAGTGCTCTTCTTCATTCAAGTATATATATCTCATATGAGATGGTAGCACCTTTTTGGATTTCATGGGTTCTGTTAGTGTCCAAAATTATTGATGATGTAGCTGGGTATAACAAAGTGGGAGTAGCTTTTACAAGTCCTGCATCCTGAAGGGCTGGGAAGAATTTGTTTTGAAGCCCATTAATTATATTCAAAATCTAGCTTTGAAATGCCTGAACATGAATTTTTTGGTGTCGCATTCAGTATGTTGAAATGCATACATTAGCTGTTTTAGCCCTGTAGTTGAACATAACTTTCTAAGGTTGTAATTCTTATATGTTCTTCATCCTTTTGTTTTTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAA

mRNA sequence

ATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAA

Coding sequence (CDS)

ATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAA

Protein sequence

MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Homology
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BLAST of Cla97C05G094030 vs. NCBI nr
Match: XP_008461561.1 (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461562.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461563.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_011651356.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651357.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651358.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651359.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >KGN57714.1 hypothetical protein Csa_3G258160 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.8e-63
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Cla97C05G094030 vs. NCBI nr
Match: XP_022143259.1 (transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143260.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143261.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia])

HSP 1 Score: 249.6 bits (636), Expect = 5.2e-63
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Cla97C05G094030 vs. NCBI nr
Match: XP_022948256.1 (transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948257.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948258.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022998096.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998097.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998098.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_023523239.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo] >XP_023523240.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 8.9e-63
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPKRV 116

[Close]
BLAST of Cla97C05G094030 vs. NCBI nr
Match: XP_012065876.1 (transcription elongation factor SPT4 homolog 2 [Jatropha curcas] >XP_012074304.1 transcription elongation factor SPT4 homolog 2 isoform X2 [Jatropha curcas] >XP_021621125.1 transcription elongation factor SPT4 homolog 2 [Manihot esculenta] >OAY59109.1 hypothetical protein MANES_01G004800 [Manihot esculenta])

HSP 1 Score: 244.2 bits (622), Expect = 2.2e-61
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYIPPKRV 116

[Close]
BLAST of Cla97C05G094030 vs. NCBI nr
Match: XP_021675887.1 (transcription elongation factor SPT4 homolog 2 [Hevea brasiliensis])

HSP 1 Score: 243.8 bits (621), Expect = 2.9e-61
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYIPPKRI 116

[Close]
BLAST of Cla97C05G094030 vs. TrEMBL
Match: tr|A0A1S3CFH1|A0A1S3CFH1_CUCME (Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC103500131 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-63
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Cla97C05G094030 vs. TrEMBL
Match: tr|A0A0A0L9Q3|A0A0A0L9Q3_CUCSA (Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G258160 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-63
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 116

[Close]
BLAST of Cla97C05G094030 vs. TrEMBL
Match: tr|A0A2P2IKF3|A0A2P2IKF3_RHIMU (Transcription elongation factor SPT4 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.0e-62
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYIPPKRV 116

[Close]
BLAST of Cla97C05G094030 vs. TrEMBL
Match: tr|A0A2C9WIV2|A0A2C9WIV2_MANES (Transcription elongation factor SPT4 homolog OS=Manihot esculenta OX=3983 GN=MANES_01G004800 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.4e-61
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPKRV
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYIPPKRV 116

[Close]
BLAST of Cla97C05G094030 vs. TrEMBL
Match: tr|B9RGK4|B9RGK4_RICCO (Transcription elongation factor SPT4 homolog OS=Ricinus communis OX=3988 GN=RCOM_1454570 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.2e-61
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ LCEEERVQY PPKRV
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQALCEEERVQYNPPKRV 116

[Close]
BLAST of Cla97C05G094030 vs. Swiss-Prot
Match: sp|Q94C60|SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g63670 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-57
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]
BLAST of Cla97C05G094030 vs. Swiss-Prot
Match: sp|Q8LCQ3|SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g08565 PE=3 SV=3)

HSP 1 Score: 218.4 bits (555), Expect = 4.2e-56
Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

[Close]
BLAST of Cla97C05G094030 vs. Swiss-Prot
Match: sp|Q6DGQ0|SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.3e-20
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 8  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
          +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M
Sbjct: 6  VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMM 65

Query: 68 DPARSWAARWLRIGRFVPGCYTLAVSEALP 97
           P  SW A+W RIG F PG Y + V+  LP
Sbjct: 66 SPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94

[Close]
BLAST of Cla97C05G094030 vs. Swiss-Prot
Match: sp|Q5RFH5|SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-19
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of Cla97C05G094030 vs. Swiss-Prot
Match: sp|P63271|SPT4A_MOUSE (Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of Cla97C05G094030 vs. TAIR10
Match: AT5G63670.1 (SPT4 homolog 2)

HSP 1 Score: 223.8 bits (569), Expect = 5.5e-59
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PKR+
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKRM 116

[Close]
BLAST of Cla97C05G094030 vs. TAIR10
Match: AT5G08565.1 (Transcription initiation Spt4-like protein)

HSP 1 Score: 218.4 bits (555), Expect = 2.3e-57
Identity = 93/116 (80.17%), Postives = 107/116 (92.24%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKRV 117
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPKR+
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKRI 116

The following BLAST results are available for this feature:
BLAST of Cla97C05G094030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461561.11.8e-6399.14PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008... [more]
XP_022143259.15.2e-6398.28transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_0221432... [more]
XP_022948256.18.9e-6397.41transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_02294825... [more]
XP_012065876.12.2e-6194.83transcription elongation factor SPT4 homolog 2 [Jatropha curcas] >XP_012074304.1... [more]
XP_021675887.12.9e-6193.97transcription elongation factor SPT4 homolog 2 [Hevea brasiliensis][more]
BLAST of Cla97C05G094030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CFH1|A0A1S3CFH1_CUCME1.2e-6399.14Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC10350... [more]
tr|A0A0A0L9Q3|A0A0A0L9Q3_CUCSA1.2e-6399.14Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3... [more]
tr|A0A2P2IKF3|A0A2P2IKF3_RHIMU5.0e-6295.69Transcription elongation factor SPT4 homolog OS=Rhizophora mucronata OX=61149 PE... [more]
tr|A0A2C9WIV2|A0A2C9WIV2_MANES1.4e-6194.83Transcription elongation factor SPT4 homolog OS=Manihot esculenta OX=3983 GN=MAN... [more]
tr|B9RGK4|B9RGK4_RICCO3.2e-6195.69Transcription elongation factor SPT4 homolog OS=Ricinus communis OX=3988 GN=RCOM... [more]
BLAST of Cla97C05G094030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q94C60|SPT42_ARATH1.0e-5784.48Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q8LCQ3|SPT41_ARATH4.2e-5680.17Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q6DGQ0|SPT4H_DANRE8.3e-2048.89Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1[more]
sp|Q5RFH5|SPT4H_PONAB1.8e-1941.35Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=... [more]
sp|P63271|SPT4A_MOUSE2.4e-1941.35Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2... [more]
BLAST of Cla97C05G094030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G63670.15.5e-5984.48SPT4 homolog 2[more]
AT5G08565.12.3e-5780.17Transcription initiation Spt4-like protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0032786positive regulation of DNA-templated transcription, elongation
Vocabulary: INTERPRO
TermDefinition
IPR029040RPABC4/Spt4
IPR009287Spt4
IPR038510Spt4_sf
IPR022800Spt4/RpoE2_Znf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032786 positive regulation of DNA-templated transcription, elongation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006325 chromatin organization
biological_process GO:0006397 mRNA processing
biological_process GO:0034243 regulation of transcription elongation from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0032044 DSIF complex
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0000993 RNA polymerase II core binding
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G094030.1Cla97C05G094030.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 16..92
e-value: 2.9E-42
score: 156.4
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 16..92
e-value: 9.1E-33
score: 112.1
IPR022800Spt4/RpoE2 zinc fingerCDDcd07973Spt4coord: 14..110
e-value: 4.84809E-48
score: 150.467
IPR038510Spt4 superfamilyGENE3DG3DSA:3.30.40.210coord: 2..106
e-value: 3.4E-38
score: 131.7
IPR009287Transcription initiation Spt4PIRSFPIRSF025023Spt4coord: 2..116
e-value: 2.2E-48
score: 160.9
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 1..116
NoneNo IPR availablePANTHERPTHR12882:SF3SUBFAMILY NOT NAMEDcoord: 1..116
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILYSSF63393RNA polymerase subunitscoord: 11..91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G094030Cla007123Watermelon (97103) v1wmwmbB208
Cla97C05G094030Csa3G258160Cucumber (Chinese Long) v2cuwmbB218
Cla97C05G094030ClCG05G012130Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G094030Cucsa.031720Cucumber (Gy14) v1cgywmbB004
Cla97C05G094030CsGy3G020070Cucumber (Gy14) v2cgybwmbB209
Cla97C05G094030CsaV3_3G020290Cucumber (Chinese Long) v3cucwmbB220
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G094030Silver-seed gourdcarwmbB0503
Cla97C05G094030Silver-seed gourdcarwmbB0795
Cla97C05G094030Cucurbita maxima (Rimu)cmawmbB264
Cla97C05G094030Cucurbita maxima (Rimu)cmawmbB473
Cla97C05G094030Cucurbita moschata (Rifu)cmowmbB244
Cla97C05G094030Cucurbita moschata (Rifu)cmowmbB454
Cla97C05G094030Wild cucumber (PI 183967)cpiwmbB224
Cla97C05G094030Bottle gourd (USVL1VR-Ls)lsiwmbB329
Cla97C05G094030Melon (DHL92) v3.6.1medwmbB431
Cla97C05G094030Melon (DHL92) v3.5.1mewmbB434
Cla97C05G094030Wax gourdwgowmbB194