ClCG05G012130 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G012130
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTranscription elongation factor SPT4 homolog
LocationCG_Chr05 : 15283722 .. 15289812 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTATTTTGAAGCCCGACTTTCTATTTCTTCTTCTTTCTCCCTTGGTTAGTACTACTATTCGTTCCCTAGTTTTCTTTTCTGCCGATGCTGTGCACACCGGCTCACTGACGCCGCCCGCCAGTCATTACTGCCGTCGACCCGCTGCCGTGCCGCCTCCACCGACGACCATACATCCAAGTAACTTCTTCATTTATCAAAACTTCTCTCTCTCTCTCTCCCCCCTCCTAAAATGAGGGAATCTCACCGATAATACATCGAATTACTAATGTTGTTAGAGTAATCGGCAGAAGGATCGAGTAGGTGATTGGAAACTAGCAGGGAGGGATCGGAAGTAATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTTTAGTCTCCTGTTTTCAAGAAGCTTTGGTTGTCCTTGTGAATGCTTGCGTTCAATCTCTAATTGGTCATGCATACAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGTTTGTATAATTTTCTTCTCCTGTATTCTTTTTTTGTGTTACTGTTTGTCATTTTGTTCAAACTAGTTTGCTTCCGTCGTGCCTTGGATAGAAGTTTGGACATGACATATAATTTCAGTTATTTCAATGAAAATCTACAAAATTTCTACAGGAAACCTAAAAATATTCAATCAATATTAAAAGAAGTAATATTCAGCTTATGATCATACTGTATTTCAGTTAGATTTGTTGTACCCTTTTGCATATCTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCTCTTTCTTCTTTCTTACTCCCCTCCCATTATTGTTTTGTAACTAAACATGTTGCTTTTGACAAAGAATTGACTAACCTTAGTACTCGTTATTCAATTAGCAGTTAATATCTTCCTCTCTGACTTATTAATTTCTGTGGCGAAGTTTCAACTTTCAAGAACATTCGTAATTTTGTAGATCGAACAAAAGAAAGGATGTCATTTTCATTTTTCAACATAGAAATCTGTCCATTTATTCCGAGCCTAACATTAGGACAGTGAACAATTTTTCATTTTAAGCTGGTCCTATGCACTTGCTGATATCCTTTGAATTAAATGGTAAGAAACTGCTATGTTGCTGCTGAACGCCTGAAAACTGACCAATATCTTGAATTTTTGTTAGTGGATAATGAATTGCATGCGCTATAGTGTTTAGTTTACTTATATGTATGGTCGAATGAAAAGTTTAGCAATTTGGAGCAATGGCTTTTATTTTTATTATAAGATCAACGTTGATACAATTGTTGAGTAATACCCGGAATTGATTGAACCGACAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACCTCTTGTTTGAATTTTGTTGTATTAGCTACCTTTCATTTCACCTAATTTTAATCATTCATTAAATTTCTTGCTTGTAACCTTTTAGTTTTGTGTGTAATTTGTTTGCTCTATAGTAGCGTTTGGCATTTCAAATTTATATTTCCTGCCAATCTTGCAGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGGTTTGCAACCAATCATTACGTAGCATAAATTTCACCATGACACATTTACATGTTTCATTCTTCTGTGTTCATCATGTACCAAAGCCATCAGGAATATCCATGCCCATTGGTCGATTGTTTCTGGTTAAGGATTTTTCATTTGATTTACTATTCTTATTTAATTCTCTCTCCCTCTCCCTTTCTCTATTGTTGTTCTTTTTCTTTGATTCTTTGTGTTGTTTGCTGTGACCTAATAATAAATTCAGTGGCTCCTCTTGCCTGTAACTTCAGAAACTAAACATCAGGATTGGGAAATTGGTGCATGTGGAATTGGAGGACATCTGGTCCCTTGGGTTGGGAACAACCCTTAAGACTTTCCATTTAAATCAGTATAGTTAGCTTAATTTTACAAGTTGGGGAGGATTCGGTTATCCTTGTATTTACTTTATTTCTCTTGATGATAGTTCAGTTTCTAACAAAGAAATACAAAAACAAAACAAAAGATTTTTCACTTCAACTGCTCCATGATCGAATTGGACTACTGTAAAAAAGGACCCAACCGCATAGATTTCAATTTTCATGGGCATAATTTGAGGCATGAGTTATTGAGCAACACCTATTGACCCGAACAAAGTTTATATTCTAATGTACTTGTGTTAGGAACCAAGGTAGTATGGGCTACCTTTGTCCCACATTGGTTAGAATGGGATGACCAATGTGGGACAAAGGTAGCCCATACTATTGAAGTGGAGAACCACACCCCAAAAGCTAGCTATTGAGGTGGGAGAGCCAAGCCACTTAAGTACCACATTGGTCATCCCATTCTAGCCAATGTGGGACAAAGGTAGCCCATACTACCTTGGTTCCTAACAACTTGTTGTGCCATGCCTTGGTTCTCTTCTTCTTATGAATTCAAGCATTCTCATATGCCTCATTTCATTATTTATTCATCTTCAACGGTTACAATCTCTTCTCATCGACTAGTTTTAAATCCATATTCAACAATTTCATTGTTCAATATGCCTTATGTTCCAACTCTACTAGAAGGTGGCATGTTTTGCCAAAAACTACATGTAAGGAGATATCACATGAGGAGTTCTGAATGCGGTCCTACATGCCTACAGACTACAATGCAACATTTAATTTCTTTGTCCAATCTTTGAGTGAATGGTGCATTGTCTTCTCAAGGATACCCTTCACCACTCTGTCGCTAAATTCCATTTGTTCATCTGTGTGAAGGTGATAAGCTAAAGTTATCCTATGTCTTACTCTACATTTAGCCAAGAGTGCTGCAAATTGCTGCTTGTTGGAGTGCAATCCTCCACTTATGATTGCTCATGGCATCCCAAATCTTGTAAAAATATTATTTTGAGAAAATTTTGGGCTACCTTTCCTTCGTTTGTTGTAGTAGTAATTGCCTTCACCCATGTTGACACATGATCAATAGCAAAATGTTCTTATTGTTGTATGAAGATGGCACGGCCCCATGAAATTCATTCCCCACCCATCAAATAGTTTCACTTCAAAATGTTTTGGAAGAACATTTCATCCTAGAGATATTCCTTGTTCATTGACATTTGTCACGTGCTGGTAAAAAAGAAACTCCAAATACCAAGAAATCATCCTTAAATAACTTGATGCATTTTTGACCATGTCTAAAAAGATCACCATTGTGCACCTTTGTAATCTGATGGATGCCAAGAGTAGATCGAAGGGCATTCTACTAAATGCAAAAATGCCATACGGGATGTGGACGTAGTCTCCTCTTGATACTTCGTTGCAATTTCAATTTGATGATATTGATAGGAATGCTATTAGAGTGTTTTAAGGCATATTAGTAATTAGCTAGAGGAGTTTGTTATGGAGTTTGGTTATGAATAAAGGCTAGGGGAATGAGGAAGGTAGGTAATCATGTGGTGAGTGAAATAGGCTTGAGAGTGATCTCAAAAGGACACGGTCCAAGTACCTTGATTATAGATTTTACTCACATGGTGATTTATCTTATAAAGACTTTTCTAATTCGATTGATTAAAGAGGATTAAAAAAGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTCGAGTGAAGTAGAAGATTGCCCAAAGGTTCTTTTAGAGCTTGATCGGCCCCTTACTTTGAATGACTTAGATGACTATGGTCCTAAGGTGAGGTACTCCTTTTGTTCCATAGATGATTTTTCTTACCAAGAAGAGCCTCCAGATGAAGTTAAGCATTTATGATCTCTTCAGCCCATTGTGAGTTCTAACATGGTGAAACTAACATGGTGAAACCAACGTTCATGAAAGCTTTCCCTCTACATTACCCTCGAAAGAAAGAAGTTTCTAGTGTTCTTGATTATGAAGAGAACATTTTGATGCTTTAGAAGAATCTTGAACTCATCTTTTGATTTCTTCATCAGTCGCTTCAAAATAGCATAAGTCTTTGGATCGACAAGCTCTTTAAGCAATCTTTTATCACGCTCCCTGGATCAGATGTTCAATTTATTAAATGGGCATCCAATCCCCTTCTCCTGAAGAAGTTTTATCTTCTTATGATGATGGTGACGAATCAATTGTCAGTGTGAGCAGTGAAGAGGTAGAATTTCCTATGGAGGAATCAATGCAACAAGAGTTATTATCAGAGGATATATTTGCAGAAATCTATAATCATGTTTTTGCAAGCGAATACATTAGATCACTTAGTTCAAAGCCCTTTGTTGCAGCATCACCAATGTCTTTTCCTTTGATTCCTGACAAATTCACTTTTTTTGTTAAGGTTTGTGATCTTCAACTGCGGGCAATTCCTTCTAGATCTCTGGGAGTTATAGCTCAATGGTGTTCACCTTGTTTGTTTAAAGCTATCAACACTTTTTTGGATTGTTCAAGGTTTTTTGGTCTTTCGCTGGGCAATCTTGTCAGTTTTTTGGTTTGACGTTTCTCTTTGTTTGGTTTGGTTTATTTTGGTTCGGTTTGTCTCTTAGATTGGGCTCTCTCTCTAAGTTTTTTGTGCTTCTTAGTTGAAGGTTTGTCGTCTTATTTGGCTTGTATTCTTCATCAATTTGTTTGCCTCTTATTTTGTATTCTAGTTGGACGTCTTGTATTTTGGAGCATTAGTCTCTTTTCATTTTATCAATAAAATTTCGGTTTCCTTTTTTTTAAAAAGGAAAGAAAAACAGATATCTTGAGTAACCATCCGGAAAACATTAGTATTTATGTCGTCCTAATCTGTCTAACCTTTGGTCAATAGAGGGCAAGGGTTGCCTTGTCTAACTACTTGTAATGTATGCAGCTTCTCCAACCAATGATTGTTCTTGCCGGGATCAACTCTTTATTCTCGTTCTCTACCACTGTTGTTCCTCCTTTCTTTGTTACCACATGTACTAGATCCACCCATCTCCAAACTTCACCCCGAATCTCTTTCATTTTCTGGTTGAGCCTCCTTTGCACTTCTATTAAGGCGTAATCCCCTCTTCTAATAAAATTTTGTGCATACACAATGAAGGGCTCATACCTTTTGTACTTGCCAAAGACCATCAGATTGCCTGTTTATGTTTCCTAATTGCACGCAACAACCATCTTTTCTCTTGAATAGACAACTCTACTGAGATGATTGCTGAATGAGTGCTCTTCTTCATTCAAGTATATATATCTCATATGAGATGGTAGCACCTTTTTGGATTTCATGGGTTCTGTTAGTGTCCAAAATTATTGATGATGTAGCTGGGTATAACAAAGTGGGAGTAGCTTTTACAAGTCCTGCATCCTGAAGGGCTGGGAAGAATTTGTTTTGAAGCCCATTAATTATATTCAAAATCTAGCTTTGAAATGCCTGAACATGAATTTTTTGGTGTCGCATTCAGTATGTTGAAATGCATACATTAGCTGTTTTAGCCCTGTAGTTGAACATAACTTTCTAAGGTTGTAATTCTTATATGTTCTTCATCCTTTTGTTTTTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAACTGTATGTTATATCTAGTTTATCCTGATTACAAAGAATTCCACCTTGTTCATGTAGTAGCACTTTTAGTTGAACTAGCATTTAGTGTGTGTTGTCATTTGATTGGAATGAACAGAAGGTATAGTCGCTAACACCTTGCATTGTACATCTTTATTTGCTTCCCCAGTGCGTTTCTTTATTGCCTGTTAAAATACTCACCCACGGTTTGAAGAGGTTGAATTTGAGTGGCTGAGAACACAGGTTTAACCAAAGTACTGTTAGTTTATTGCTCCAAGGAGAAAGCATGTTGGCATGCGAAAAAGAGGTAGATTTAATACAGATGGATATCATTTGTACTTAATTGACAAGAATAAAG

mRNA sequence

TTTTATTTTGAAGCCCGACTTTCTATTTCTTCTTCTTTCTCCCTTGGTTAGTACTACTATTCGTTCCCTAGTTTTCTTTTCTGCCGATGCTGTGCACACCGGCTCACTGACGCCGCCCGCCAGTCATTACTGCCGTCGACCCGCTGCCGTGCCGCCTCCACCGACGACCATACATCCAAAGTAATCGGCAGAAGGATCGAGTAGGTGATTGGAAACTAGCAGGGAGGGATCGGAAGTAATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGTGGCTCCTCTTGCCTGTAACTTCAGAAACTAAACATCAGGATTGGGAAATTGGTGCATGTGGAATTGGAGGACATCTGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTCGAGTGAAGTAGAAGATTGCCCAAAGGTTCTTTTAGAGCTTGATCGGCCCCTTACTTTGAATGACTTAGATGACTATGGTCCTAAGGTGAGTGTGAGCAGTGAAGAGGTAGAATTTCCTATGGAGGAATCAATGCAACAAGAGTTATTATCAGAGGATATATTTGCAGAAATCTATAATCATGTTTTTGCAAGCGAATACATTAGATCACTTAGTTCAAAGCCCTTTGTTGCAGCATCACCAATGTCTTTTCCTTTGATTCCTGACAAATTCACTTTTTTTGTTAAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAACTGTATGTTATATCTAGTTTATCCTGATTACAAAGAATTCCACCTTGTTCATGTAGTAGCACTTTTAGTTGAACTAGCATTTAGTGTGTGTTGTCATTTGATTGGAATGAACAGAAGGTATAGTCGCTAACACCTTGCATTGTACATCTTTATTTGCTTCCCCAGTGCGTTTCTTTATTGCCTGTTAAAATACTCACCCACGGTTTGAAGAGGTTGAATTTGAGTGGCTGAGAACACAGGTTTAACCAAAGTACTGTTAGTTTATTGCTCCAAGGAGAAAGCATGTTGGCATGCGAAAAAGAGGTAGATTTAATACAGATGGATATCATTTGTACTTAATTGACAAGAATAAAG

Coding sequence (CDS)

ATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGTGGCTCCTCTTGCCTGTAACTTCAGAAACTAAACATCAGGATTGGGAAATTGGTGCATGTGGAATTGGAGGACATCTGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTCGAGTGAAGTAGAAGATTGCCCAAAGGTTCTTTTAGAGCTTGATCGGCCCCTTACTTTGAATGACTTAGATGACTATGGTCCTAAGGTGAGTGTGAGCAGTGAAGAGGTAGAATTTCCTATGGAGGAATCAATGCAACAAGAGTTATTATCAGAGGATATATTTGCAGAAATCTATAATCATGTTTTTGCAAGCGAATACATTAGATCACTTAGTTCAAAGCCCTTTGTTGCAGCATCACCAATGTCTTTTCCTTTGATTCCTGACAAATTCACTTTTTTTGTTAAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAA

Protein sequence

MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWLLLPVTSETKHQDWEIGACGIGGHLVMEDEAFILSNDGKSSEVEDCPKVLLELDRPLTLNDLDDYGPKVSVSSEEVEFPMEESMQQELLSEDIFAEIYNHVFASEYIRSLSSKPFVAASPMSFPLIPDKFTFFVKNLCEEERVQYAPPKRV
Homology
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BLAST of ClCG05G012130 vs. Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.8e-49
Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWL 103
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q L
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHL 102

[Close]
BLAST of ClCG05G012130 vs. Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=2 SV=3)

HSP 1 Score: 193.0 bits (489), Expect = 4.0e-48
Identity = 84/102 (82.35%), Postives = 94/102 (92.16%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWL 103
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q++
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFI 102


HSP 2 Score: 29.3 bits (64), Expect = 7.7e+01
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 1 

Query: 227 IPDKFTFFVKNLCEEERVQYAPPKRV 253
           +P++  F    +C++ RVQY PPKR+
Sbjct: 95  LPEEMQF----ICQQARVQYVPPKRI 116

[Close]
BLAST of ClCG05G012130 vs. Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-18
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 1 

Query: 8  IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVECTTPNFNGIISVM 67
          +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M
Sbjct: 6  VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMM 65

Query: 68 DPARSWAARWLRIGRFVPGCYTLAVSEALP 97
           P  SW A+W RIG F PG Y + V+  LP
Sbjct: 66 SPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94

[Close]
BLAST of ClCG05G012130 vs. Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDL 100
            P  SW ++W R+  F PG Y ++V+  LP+ +
Sbjct: 66  SPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGI 97

[Close]
BLAST of ClCG05G012130 vs. Swiss-Prot
Match: SPT4A_MOUSE (Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-17
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDL 100
            P  SW ++W R+  F PG Y ++V+  LP+ +
Sbjct: 66  SPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGI 97

[Close]
BLAST of ClCG05G012130 vs. TrEMBL
Match: A0A0A0L9Q3_CUCSA (Transcription elongation factor SPT4 homolog OS=Cucumis sativus GN=Csa_3G258160 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.5e-52
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 101
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 100

[Close]
BLAST of ClCG05G012130 vs. TrEMBL
Match: A0A0A0L9Q3_CUCSA (Transcription elongation factor SPT4 homolog OS=Cucumis sativus GN=Csa_3G258160 PE=3 SV=1)

HSP 1 Score: 38.9 bits (89), Expect = 1.1e+01
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 1 

Query: 235 VKNLCEEERVQYAPPKRV 253
           ++NLCEEERVQYAPPKRV
Sbjct: 99  LQNLCEEERVQYAPPKRV 116


HSP 2 Score: 211.5 bits (537), Expect = 1.2e-51
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWL 103
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ L
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQAL 102

[Close]
BLAST of ClCG05G012130 vs. TrEMBL
Match: B9RGK4_RICCO (Transcription elongation factor SPT4 homolog OS=Ricinus communis GN=RCOM_1454570 PE=3 SV=1)

HSP 1 Score: 33.5 bits (75), Expect = 4.6e+02
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 1 

Query: 238 LCEEERVQYAPPKRV 253
           LCEEERVQY PPKRV
Sbjct: 102 LCEEERVQYNPPKRV 116


HSP 2 Score: 210.3 bits (534), Expect = 2.7e-51
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWL 103
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ L
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQSL 102

[Close]
BLAST of ClCG05G012130 vs. TrEMBL
Match: V4U747_9ROSI (Transcription elongation factor SPT4 homolog OS=Citrus clementina GN=CICLE_v10017231mg PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.6e-51
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 101
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 100

[Close]
BLAST of ClCG05G012130 vs. TrEMBL
Match: V4U747_9ROSI (Transcription elongation factor SPT4 homolog OS=Citrus clementina GN=CICLE_v10017231mg PE=3 SV=1)

HSP 1 Score: 34.7 bits (78), Expect = 2.0e+02
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 1 

Query: 235 VKNLCEEERVQYAPPKR 252
           ++NLCE+ERVQY PPKR
Sbjct: 99  LQNLCEDERVQYVPPKR 115


HSP 2 Score: 209.5 bits (532), Expect = 4.6e-51
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 101
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 100

[Close]
BLAST of ClCG05G012130 vs. TAIR10
Match: AT5G63670.1 (AT5G63670.1 SPT4 homolog 2)

HSP 1 Score: 196.8 bits (499), Expect = 1.6e-50
Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWL 103
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q L
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHL 102

[Close]
BLAST of ClCG05G012130 vs. TAIR10
Match: AT5G08565.1 (AT5G08565.1 Transcription initiation Spt4-like protein)

HSP 1 Score: 193.0 bits (489), Expect = 2.3e-49
Identity = 84/102 (82.35%), Postives = 94/102 (92.16%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWL 103
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q++
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFI 102


HSP 2 Score: 29.3 bits (64), Expect = 4.4e+00
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 1 

Query: 227 IPDKFTFFVKNLCEEERVQYAPPKRV 253
           +P++  F    +C++ RVQY PPKR+
Sbjct: 95  LPEEMQF----ICQQARVQYVPPKRI 116

[Close]
BLAST of ClCG05G012130 vs. NCBI nr
Match: gi|659123238|ref|XP_008461561.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 3.5e-52
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 101
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 100

[Close]
BLAST of ClCG05G012130 vs. NCBI nr
Match: gi|659123238|ref|XP_008461561.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo])

HSP 1 Score: 38.9 bits (89), Expect = 1.6e+01
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 1 

Query: 235 VKNLCEEERVQYAPPKRV 253
           ++NLCEEERVQYAPPKRV
Sbjct: 99  LQNLCEEERVQYAPPKRV 116


HSP 2 Score: 211.5 bits (537), Expect = 1.8e-51
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWL 103
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ L
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQAL 102

[Close]
BLAST of ClCG05G012130 vs. NCBI nr
Match: gi|255544187|ref|XP_002513156.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Ricinus communis])

HSP 1 Score: 33.5 bits (75), Expect = 6.5e+02
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 1 

Query: 238 LCEEERVQYAPPKRV 253
           LCEEERVQY PPKRV
Sbjct: 102 LCEEERVQYNPPKRV 116


HSP 2 Score: 210.3 bits (534), Expect = 3.9e-51
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQWL 103
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ L
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQSL 102

[Close]
BLAST of ClCG05G012130 vs. NCBI nr
Match: gi|802537760|ref|XP_012065876.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas])

HSP 1 Score: 209.9 bits (533), Expect = 5.1e-51
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 101
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 100

[Close]
BLAST of ClCG05G012130 vs. NCBI nr
Match: gi|802537760|ref|XP_012065876.1| (PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas])

HSP 1 Score: 35.8 bits (81), Expect = 1.3e+02
Identity = 14/18 (77.78%), Postives = 17/18 (94.44%), Query Frame = 1 

Query: 235 VKNLCEEERVQYAPPKRV 253
           ++NLCE+ERVQY PPKRV
Sbjct: 99  LQNLCEDERVQYIPPKRV 116


HSP 2 Score: 209.5 bits (532), Expect = 6.7e-51
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 1 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 101
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ 100

The following BLAST results are available for this feature:
BLAST of ClCG05G012130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SPT42_ARATH2.8e-4986.27Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63... [more]
SPT41_ARATH4.0e-4882.35Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08... [more]
SPT4H_DANRE2.0e-1848.89Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1[more]
SPT4H_PONAB1.3e-1744.09Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1[more]
SPT4A_MOUSE1.7e-1744.09Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1[more]
BLAST of ClCG05G012130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9Q3_CUCSA2.5e-5299.00Transcription elongation factor SPT4 homolog OS=Cucumis sativus GN=Csa_3G258160 ... [more]
A0A0A0L9Q3_CUCSA1.1e+0188.89Transcription elongation factor SPT4 homolog OS=Cucumis sativus GN=Csa_3G258160 ... [more]
B9RGK4_RICCO4.6e+0293.33Transcription elongation factor SPT4 homolog OS=Ricinus communis GN=RCOM_1454570... [more]
V4U747_9ROSI4.6e-5196.00Transcription elongation factor SPT4 homolog OS=Citrus clementina GN=CICLE_v1001... [more]
V4U747_9ROSI2.0e+0276.47Transcription elongation factor SPT4 homolog OS=Citrus clementina GN=CICLE_v1001... [more]
BLAST of ClCG05G012130 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G63670.11.6e-5086.27 SPT4 homolog 2[more]
AT5G08565.12.3e-4982.35 Transcription initiation Spt4-like protein[more]
BLAST of ClCG05G012130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123238|ref|XP_008461561.1|3.5e-5299.00PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo][more]
gi|659123238|ref|XP_008461561.1|1.6e+0188.89PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo][more]
gi|255544187|ref|XP_002513156.1|6.5e+0293.33PREDICTED: transcription elongation factor SPT4 homolog 2 [Ricinus communis][more]
gi|802537760|ref|XP_012065876.1|5.1e-5196.00PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas][more]
gi|802537760|ref|XP_012065876.1|1.3e+0277.78PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016046Transcription initiation Spt4-like
IPR022800Spt4/RpoE2_Znf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032786 positive regulation of DNA-templated transcription, elongation
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G012130.1ClCG05G012130.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016046Transcription initiation Spt4-likePANTHERPTHR12882SUPPRESSOR OF TY 4coord: 1..103
score: 4.0
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 16..92
score: 5.9
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 16..92
score: 2.9
NoneNo IPR availablePANTHERPTHR12882:SF1TRANSCRIPTION ELONGATION FACTOR SPT4coord: 1..103
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G012130Cla007123Watermelon (97103) v1wcgwmB287
ClCG05G012130Cla97C05G094030Watermelon (97103) v2wcgwmbB229
ClCG05G012130MELO3C023752.2Melon (DHL92) v3.6.1medwcgB423
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G012130Wax gourdwcgwgoB441
ClCG05G012130Cucumber (Gy14) v1cgywcgB004
ClCG05G012130Cucurbita maxima (Rimu)cmawcgB234
ClCG05G012130Cucurbita maxima (Rimu)cmawcgB407
ClCG05G012130Cucurbita moschata (Rifu)cmowcgB220
ClCG05G012130Cucurbita moschata (Rifu)cmowcgB406
ClCG05G012130Wild cucumber (PI 183967)cpiwcgB241
ClCG05G012130Cucumber (Chinese Long) v2cuwcgB233
ClCG05G012130Melon (DHL92) v3.5.1mewcgB427
ClCG05G012130Cucurbita pepo (Zucchini)cpewcgB518
ClCG05G012130Cucurbita pepo (Zucchini)cpewcgB560
ClCG05G012130Bottle gourd (USVL1VR-Ls)lsiwcgB332
ClCG05G012130Cucumber (Gy14) v2cgybwcgB217
ClCG05G012130Melon (DHL92) v3.6.1medwcgB427
ClCG05G012130Silver-seed gourdcarwcgB0464
ClCG05G012130Silver-seed gourdcarwcgB0739
ClCG05G012130Cucumber (Chinese Long) v3cucwcgB241