Csa2G351540 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G351540
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDrought-induced protein 1; contains IPR001305 (Heat shock protein DnaJ, cysteine-rich domain)
LocationChr2 : 16095321 .. 16095662 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAACCCCAAATCCAATTTCCCTCATTCATCCTCTTTCTTCTCTAATTTCAATGGATCAGATTGCTCTGTCTCAGCTTGCCACCGGCCTGAGTGTGCTGGCCGGCGCCGTGGTCGTGAAATCAGTAATCGAACAGAAGCTACCGATGGCTGGGTCGATGCCGAGGTGTCCGACTTGTAAAGGGTCGGGTCGGGTCACGTGTATATGCGTCCGGTGGTCAGATGGAGATGTTGGGTGCCGTTCGTGTTCAGGGTCAGGTCGGATGTCGTGTAGAAGTTGCGGTGGCGGTGGGAGAGGACGACCGATCACCGTACAATTATCGATGAGCCAATCCAACCGCTGA

mRNA sequence

ATGGATCAGATTGCTCTGTCTCAGCTTGCCACCGGCCTGAGTGTGCTGGCCGGCGCCGTGGTCGTGAAATCAGTAATCGAACAGAAGCTACCGATGGCTGGGTCGATGCCGAGGTGTCCGACTTGTAAAGGGTCGGGTCGGGTCACGTGTATATGCGTCCGGTGGTCAGATGGAGATGTTGGGTGCCGTTCGTGTTCAGGGTCAGGTCGGATGTCGTGTAGAAGTTGCGGTGGCGGTGGGAGAGGACGACCGATCACCGTACAATTATCGATGAGCCAATCCAACCGCTGA

Coding sequence (CDS)

ATGGATCAGATTGCTCTGTCTCAGCTTGCCACCGGCCTGAGTGTGCTGGCCGGCGCCGTGGTCGTGAAATCAGTAATCGAACAGAAGCTACCGATGGCTGGGTCGATGCCGAGGTGTCCGACTTGTAAAGGGTCGGGTCGGGTCACGTGTATATGCGTCCGGTGGTCAGATGGAGATGTTGGGTGCCGTTCGTGTTCAGGGTCAGGTCGGATGTCGTGTAGAAGTTGCGGTGGCGGTGGGAGAGGACGACCGATCACCGTACAATTATCGATGAGCCAATCCAACCGCTGA

Protein sequence

MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDVGCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR*
Homology
[Close]
BLAST of Csa2G351540 vs. TrEMBL
Match: A0A0A0LKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351540 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 96

[Close]
BLAST of Csa2G351540 vs. TrEMBL
Match: W9RCB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-32
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M+ I L+Q+ATGLSVL GAV+VKSV++QK PMAG  PRCP+C G+GRVTC+C RWSDGD+
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVTCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSN 96
          GCR+C+GSGRM C SCGG G GRPIT Q+S+ + N
Sbjct: 61 GCRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPN 94

[Close]
BLAST of Csa2G351540 vs. TrEMBL
Match: V4VFK9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033174mg PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.4e-32
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M    L+Q+ATGLSVLAGA +VKSV++QK PMAG   RCP+C G+GRVTC+C RWSDGDV
Sbjct: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQK-PMAGPFDRCPSCNGTGRVTCMCTRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR+C+GSGRM+CRSCGG G GRP+ VQLS+ + NR
Sbjct: 61 GCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNR 95

[Close]
BLAST of Csa2G351540 vs. TrEMBL
Match: A0A067GQ88_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034351mg PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.4e-32
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M    L+Q+ATGLSVLAGA +VKSV++QK PMAG   RCP+C G+GRVTC+C RWSDGDV
Sbjct: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQK-PMAGPFDRCPSCNGTGRVTCMCTRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR+C+GSGRM+CRSCGG G GRP+ VQLS+ + NR
Sbjct: 61 GCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNR 95

[Close]
BLAST of Csa2G351540 vs. TrEMBL
Match: A0A0D2W0F2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G175800 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 64/88 (72.73%), Postives = 77/88 (87.50%), Query Frame = 1 

Query: 6  LSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDVGCRSC 65
          L+Q+ATGLSVLAGAV+VKSV++QK PMAG   RCPTC G+GR+TCIC RWSDGD+GCR+C
Sbjct: 6  LTQVATGLSVLAGAVLVKSVMDQK-PMAGPFQRCPTCNGTGRITCICTRWSDGDIGCRTC 65

Query: 66 SGSGRMSCRSCGGGGRGRPITVQLSMSQ 94
          +GSGRM+C SCGG G GRPI VQ+S+ Q
Sbjct: 66 AGSGRMACSSCGGSGTGRPIPVQISVRQ 92

[Close]
BLAST of Csa2G351540 vs. TAIR10
Match: AT5G43260.1 (AT5G43260.1 chaperone protein dnaJ-related)

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-34
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M  I ++QLATG+SVLAGAV +KSV++QK PMAG  PRCPTC G+GRVTC C RWSDGDV
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQK-PMAGQFPRCPTCNGTGRVTCFCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR CSGSGR +C +CGG G GRP+  Q+++   NR
Sbjct: 61 GCRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNR 95

[Close]
BLAST of Csa2G351540 vs. NCBI nr
Match: gi|449450367|ref|XP_004142934.1| (PREDICTED: uncharacterized protein LOC101220122 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.7e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 96

[Close]
BLAST of Csa2G351540 vs. NCBI nr
Match: gi|719977986|ref|XP_010249022.1| (PREDICTED: uncharacterized protein LOC104591728 [Nelumbo nucifera])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M  I +SQLATGL VLAGAV+VKSV+EQK PMAG  PRCP+C G+GRV C+C RWSDGDV
Sbjct: 1  MGPIVVSQLATGLGVLAGAVLVKSVMEQK-PMAGPWPRCPSCNGTGRVNCMCTRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR+C+GSGRM+C SCGG G GRPI VQLS+   NR
Sbjct: 61 GCRTCAGSGRMACSSCGGTGTGRPIPVQLSVRSPNR 95

[Close]
BLAST of Csa2G351540 vs. NCBI nr
Match: gi|703112866|ref|XP_010100228.1| (hypothetical protein L484_001360 [Morus notabilis])

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-32
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M+ I L+Q+ATGLSVL GAV+VKSV++QK PMAG  PRCP+C G+GRVTC+C RWSDGD+
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVTCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSN 96
          GCR+C+GSGRM C SCGG G GRPIT Q+S+ + N
Sbjct: 61 GCRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPN 94

[Close]
BLAST of Csa2G351540 vs. NCBI nr
Match: gi|659090468|ref|XP_008446034.1| (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-32
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M  I LSQLATGLSVLAGAV+VKSV++ K PMAGS PRCP+C G+GRV C+C RWSDGD+
Sbjct: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHK-PMAGSFPRCPSCNGTGRVPCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSN 96
          GCR+CSGSGRM C SCGG G GRP+  Q+S+ +SN
Sbjct: 61 GCRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSN 94

[Close]
BLAST of Csa2G351540 vs. NCBI nr
Match: gi|729335332|ref|XP_010538148.1| (PREDICTED: uncharacterized protein LOC104812595 [Tarenaya hassleriana])

HSP 1 Score: 145.6 bits (366), Expect = 4.5e-32
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M  + L+QLATGLSVLAGAV+VKSV++QK PMAG  PRCPTC G+GRV C+C RWSDGDV
Sbjct: 1  MGPVVLTQLATGLSVLAGAVLVKSVMDQK-PMAGQFPRCPTCNGTGRVACMCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR C+GSGR +C SCGG G GRPI VQ+++   NR
Sbjct: 61 GCRGCAGSGRRACNSCGGSGTGRPIPVQITVQPPNR 95

The following BLAST results are available for this feature:
BLAST of Csa2G351540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKQ8_CUCSA1.8e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351540 PE=4 SV=1[more]
W9RCB8_9ROSA1.4e-3268.42Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1[more]
V4VFK9_9ROSI5.4e-3268.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033174mg PE=4 SV=1[more]
A0A067GQ88_CITSI5.4e-3268.75Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034351mg PE=4 SV=1[more]
A0A0D2W0F2_GOSRA1.6e-3172.73Uncharacterized protein OS=Gossypium raimondii GN=B456_012G175800 PE=4 SV=1[more]
BLAST of Csa2G351540 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43260.11.8e-3465.63 chaperone protein dnaJ-related[more]
BLAST of Csa2G351540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450367|ref|XP_004142934.1|2.7e-48100.00PREDICTED: uncharacterized protein LOC101220122 [Cucumis sativus][more]
gi|719977986|ref|XP_010249022.1|1.2e-3271.88PREDICTED: uncharacterized protein LOC104591728 [Nelumbo nucifera][more]
gi|703112866|ref|XP_010100228.1|2.0e-3268.42hypothetical protein L484_001360 [Morus notabilis][more]
gi|659090468|ref|XP_008446034.1|3.5e-3270.53PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo][more]
gi|729335332|ref|XP_010538148.1|4.5e-3268.75PREDICTED: uncharacterized protein LOC104812595 [Tarenaya hassleriana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001305HSP_DnaJ_Cys-rich_dom
Vocabulary: Molecular Function
TermDefinition
GO:0031072heat shock protein binding
GO:0051082unfolded protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0051082 unfolded protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G351540.1Csa2G351540.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001305Heat shock protein DnaJ, cysteine-rich domainGENE3DG3DSA:2.10.230.10coord: 35..81
score: 5.
NoneNo IPR availableunknownCoilCoilcoord: 91..96
scor
NoneNo IPR availablePANTHERPTHR34687FAMILY NOT NAMEDcoord: 1..96
score: 5.4
NoneNo IPR availablePANTHERPTHR34687:SF1CHAPERONE PROTEIN DNAJ-LIKE PROTEINcoord: 1..96
score: 5.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G351540Cla022690Watermelon (97103) v1cuwmB111
Csa2G351540MELO3C010741Melon (DHL92) v3.5.1cumeB117
Csa2G351540ClCG08G017160Watermelon (Charleston Gray)cuwcgB169
Csa2G351540Lsi08G015980Bottle gourd (USVL1VR-Ls)culsiB142
Csa2G351540MELO3C010741.2Melon (DHL92) v3.6.1cumedB114
Csa2G351540Cla97C08G160870Watermelon (97103) v2cuwmbB163
Csa2G351540Bhi04G000470Wax gourdcuwgoB162
Csa2G351540CSPI02G17830Wild cucumber (PI 183967)cpicuB065
Csa2G351540Cucsa.394980Cucumber (Gy14) v1cgycuB549
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G351540Cucumber (Gy14) v1cgycuB072
Csa2G351540Cucurbita maxima (Rimu)cmacuB166
Csa2G351540Cucurbita maxima (Rimu)cmacuB407
Csa2G351540Cucurbita maxima (Rimu)cmacuB692
Csa2G351540Cucurbita maxima (Rimu)cmacuB784
Csa2G351540Cucurbita moschata (Rifu)cmocuB151
Csa2G351540Cucurbita moschata (Rifu)cmocuB397
Csa2G351540Cucurbita moschata (Rifu)cmocuB682
Csa2G351540Cucurbita moschata (Rifu)cmocuB777
Csa2G351540Melon (DHL92) v3.5.1cumeB091
Csa2G351540Cucurbita pepo (Zucchini)cpecuB034
Csa2G351540Cucurbita pepo (Zucchini)cpecuB096
Csa2G351540Cucurbita pepo (Zucchini)cpecuB384
Csa2G351540Cucurbita pepo (Zucchini)cpecuB813
Csa2G351540Bottle gourd (USVL1VR-Ls)culsiB119
Csa2G351540Cucumber (Gy14) v2cgybcuB057
Csa2G351540Cucumber (Gy14) v2cgybcuB205
Csa2G351540Melon (DHL92) v3.6.1cumedB080
Csa2G351540Melon (DHL92) v3.6.1cumedB095
Csa2G351540Silver-seed gourdcarcuB0202
Csa2G351540Silver-seed gourdcarcuB0647
Csa2G351540Silver-seed gourdcarcuB0712
Csa2G351540Wax gourdcuwgoB197
Csa2G351540Cucumber (Chinese Long) v2cucuB064