CSPI02G17830 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G17830
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Descriptionchaperone protein dnaJ-related
LocationChr2 : 16691459 .. 16692155 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTGATTCAAAATATCCTCTTTCTTTCTTTTATTTTATGTTTTGGTCAGTGTGTTTCTGGAAACCGTCAATTCAACTAAAAATTGGGGTTTCCATTTCTAAAGGAAAATCTAACGAAGTAACCAATTTTGTATCCCTCTTTCCCCCACTTCCATTTTCACTTTCTTCTTACTATTTCTTTTTGTTTATTTAAACCCCAAATCCAATTTCCCTCATTCATCCTCTTTCTTCTCTAATTTCAATGGATCAGATTGCTCTGTCTCAGCTTGCCACCGGCCTGAGTGTGCTAGCCGGCGCCGTGGTCGTGAAATCAGTAATCGAACAGAAGCTACCGATGGCTGGGTCGATGCCGAGGTGTCCGACTTGTAAAGGGTCGGGTCGGGTCACGTGTATATGCGTCCGGTGGTCAGATGGAGATGTTGGGTGCCGTTCGTGTTCAGGGTCAGGTCGGATGTCGTGCAGAAGTTGCGGTGGCGGTGGGAGAGGACGACCGATCACCGTACAATTATCGATGAGCCAATCCAACCGCTGATTTTGAACGTTCTTTTTCTTTCTTATTTGAATTTGGATGCAGTTGAATTGTGTTTATGTGGATCATTTAATGTAAAGAAAAGATACATTTATTTGTTTATAACAAAAAATGTTGAAGTAAAATTTATTGGTTTTAGGGTCTTACTAACATGTACGATGCTACAAGT

mRNA sequence

ATGGATCAGATTGCTCTGTCTCAGCTTGCCACCGGCCTGAGTGTGCTAGCCGGCGCCGTGGTCGTGAAATCAGTAATCGAACAGAAGCTACCGATGGCTGGGTCGATGCCGAGGTGTCCGACTTGTAAAGGGTCGGGTCGGGTCACGTGTATATGCGTCCGGTGGTCAGATGGAGATGTTGGGTGCCGTTCGTGTTCAGGGTCAGGTCGGATGTCGTGCAGAAGTTGCGGTGGCGGTGGGAGAGGACGACCGATCACCGTACAATTATCGATGAGCCAATCCAACCGCTGA

Coding sequence (CDS)

ATGGATCAGATTGCTCTGTCTCAGCTTGCCACCGGCCTGAGTGTGCTAGCCGGCGCCGTGGTCGTGAAATCAGTAATCGAACAGAAGCTACCGATGGCTGGGTCGATGCCGAGGTGTCCGACTTGTAAAGGGTCGGGTCGGGTCACGTGTATATGCGTCCGGTGGTCAGATGGAGATGTTGGGTGCCGTTCGTGTTCAGGGTCAGGTCGGATGTCGTGCAGAAGTTGCGGTGGCGGTGGGAGAGGACGACCGATCACCGTACAATTATCGATGAGCCAATCCAACCGCTGA
Homology
[Close]
BLAST of CSPI02G17830 vs. TrEMBL
Match: A0A0A0LKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351540 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 96

[Close]
BLAST of CSPI02G17830 vs. TrEMBL
Match: W9RCB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-30
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M+ I L+Q+ATGLSVL GAV+VKSV++QK PMAG  PRCP+C G+GRVTC+C RWSDGD+
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVTCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSN 96
          GCR+C+GSGRM C SCGG G GRPIT Q+S+ + N
Sbjct: 61 GCRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPN 94

[Close]
BLAST of CSPI02G17830 vs. TrEMBL
Match: V4VFK9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033174mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.9e-30
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M    L+Q+ATGLSVLAGA +VKSV++QK PMAG   RCP+C G+GRVTC+C RWSDGDV
Sbjct: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQK-PMAGPFDRCPSCNGTGRVTCMCTRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR+C+GSGRM+CRSCGG G GRP+ VQLS+ + NR
Sbjct: 61 GCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNR 95

[Close]
BLAST of CSPI02G17830 vs. TrEMBL
Match: A0A067GQ88_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034351mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.9e-30
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M    L+Q+ATGLSVLAGA +VKSV++QK PMAG   RCP+C G+GRVTC+C RWSDGDV
Sbjct: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQK-PMAGPFDRCPSCNGTGRVTCMCTRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR+C+GSGRM+CRSCGG G GRP+ VQLS+ + NR
Sbjct: 61 GCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNR 95

[Close]
BLAST of CSPI02G17830 vs. TrEMBL
Match: Q6UA14_GOSBA (Fiber protein Fb25 OS=Gossypium barbadense PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.6e-30
Identity = 64/88 (72.73%), Postives = 77/88 (87.50%), Query Frame = 1 

Query: 6  LSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDVGCRSC 65
          L+Q+ATGLSVLAGAV+VKSV++QK PMAG   RCPTC G+GR+TCIC RWSDGD+GCR+C
Sbjct: 6  LTQVATGLSVLAGAVLVKSVMDQK-PMAGPFQRCPTCNGTGRITCICTRWSDGDIGCRTC 65

Query: 66 SGSGRMSCRSCGGGGRGRPITVQLSMSQ 94
          +GSGRM+C SCGG G GRPI VQ+S+ Q
Sbjct: 66 AGSGRMACSSCGGSGTGRPIPVQISVRQ 92

[Close]
BLAST of CSPI02G17830 vs. TAIR10
Match: AT5G43260.1 (AT5G43260.1 chaperone protein dnaJ-related)

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-32
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M  I ++QLATG+SVLAGAV +KSV++QK PMAG  PRCPTC G+GRVTC C RWSDGDV
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQK-PMAGQFPRCPTCNGTGRVTCFCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR CSGSGR +C +CGG G GRP+  Q+++   NR
Sbjct: 61 GCRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNR 95

[Close]
BLAST of CSPI02G17830 vs. NCBI nr
Match: gi|449450367|ref|XP_004142934.1| (PREDICTED: uncharacterized protein LOC101220122 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 96

[Close]
BLAST of CSPI02G17830 vs. NCBI nr
Match: gi|719977986|ref|XP_010249022.1| (PREDICTED: uncharacterized protein LOC104591728 [Nelumbo nucifera])

HSP 1 Score: 141.4 bits (355), Expect = 8.6e-31
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M  I +SQLATGL VLAGAV+VKSV+EQK PMAG  PRCP+C G+GRV C+C RWSDGDV
Sbjct: 1  MGPIVVSQLATGLGVLAGAVLVKSVMEQK-PMAGPWPRCPSCNGTGRVNCMCTRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR+C+GSGRM+C SCGG G GRPI VQLS+   NR
Sbjct: 61 GCRTCAGSGRMACSSCGGTGTGRPIPVQLSVRSPNR 95

[Close]
BLAST of CSPI02G17830 vs. NCBI nr
Match: gi|703112866|ref|XP_010100228.1| (hypothetical protein L484_001360 [Morus notabilis])

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M+ I L+Q+ATGLSVL GAV+VKSV++QK PMAG  PRCP+C G+GRVTC+C RWSDGD+
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVTCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSN 96
          GCR+C+GSGRM C SCGG G GRPIT Q+S+ + N
Sbjct: 61 GCRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPN 94

[Close]
BLAST of CSPI02G17830 vs. NCBI nr
Match: gi|659090468|ref|XP_008446034.1| (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.5e-30
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M  I LSQLATGLSVLAGAV+VKSV++ K PMAGS PRCP+C G+GRV C+C RWSDGD+
Sbjct: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHK-PMAGSFPRCPSCNGTGRVPCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSN 96
          GCR+CSGSGRM C SCGG G GRP+  Q+S+ +SN
Sbjct: 61 GCRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSN 94

[Close]
BLAST of CSPI02G17830 vs. NCBI nr
Match: gi|729335332|ref|XP_010538148.1| (PREDICTED: uncharacterized protein LOC104812595 [Tarenaya hassleriana])

HSP 1 Score: 139.4 bits (350), Expect = 3.3e-30
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 1 

Query: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60
          M  + L+QLATGLSVLAGAV+VKSV++QK PMAG  PRCPTC G+GRV C+C RWSDGDV
Sbjct: 1  MGPVVLTQLATGLSVLAGAVLVKSVMDQK-PMAGQFPRCPTCNGTGRVACMCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQSNR 97
          GCR C+GSGR +C SCGG G GRPI VQ+++   NR
Sbjct: 61 GCRGCAGSGRRACNSCGGSGTGRPIPVQITVQPPNR 95

The following BLAST results are available for this feature:
BLAST of CSPI02G17830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G17830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKQ8_CUCSA1.3e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351540 PE=4 SV=1[more]
W9RCB8_9ROSA1.0e-3068.42Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1[more]
V4VFK9_9ROSI3.9e-3068.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033174mg PE=4 SV=1[more]
A0A067GQ88_CITSI3.9e-3068.75Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034351mg PE=4 SV=1[more]
Q6UA14_GOSBA8.6e-3072.73Fiber protein Fb25 OS=Gossypium barbadense PE=2 SV=1[more]
BLAST of CSPI02G17830 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43260.11.3e-3265.63 chaperone protein dnaJ-related[more]
BLAST of CSPI02G17830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450367|ref|XP_004142934.1|1.9e-46100.00PREDICTED: uncharacterized protein LOC101220122 [Cucumis sativus][more]
gi|719977986|ref|XP_010249022.1|8.6e-3171.88PREDICTED: uncharacterized protein LOC104591728 [Nelumbo nucifera][more]
gi|703112866|ref|XP_010100228.1|1.5e-3068.42hypothetical protein L484_001360 [Morus notabilis][more]
gi|659090468|ref|XP_008446034.1|2.5e-3070.53PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo][more]
gi|729335332|ref|XP_010538148.1|3.3e-3068.75PREDICTED: uncharacterized protein LOC104812595 [Tarenaya hassleriana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001305HSP_DnaJ_Cys-rich_dom
Vocabulary: Molecular Function
TermDefinition
GO:0031072heat shock protein binding
GO:0051082unfolded protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0051082 unfolded protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G17830.1CSPI02G17830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001305Heat shock protein DnaJ, cysteine-rich domainGENE3DG3DSA:2.10.230.10coord: 35..81
score: 5.
NoneNo IPR availablePANTHERPTHR34687FAMILY NOT NAMEDcoord: 1..96
score: 5.4
NoneNo IPR availablePANTHERPTHR34687:SF1CHAPERONE PROTEIN DNAJ-LIKE PROTEINcoord: 1..96
score: 5.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G17830Cla022690Watermelon (97103) v1cpiwmB116
CSPI02G17830Csa2G351540Cucumber (Chinese Long) v2cpicuB065
CSPI02G17830MELO3C010741Melon (DHL92) v3.5.1cpimeB118
CSPI02G17830ClCG08G017160Watermelon (Charleston Gray)cpiwcgB172
CSPI02G17830Lsi08G015980Bottle gourd (USVL1VR-Ls)cpilsiB141
CSPI02G17830MELO3C010741.2Melon (DHL92) v3.6.1cpimedB114
CSPI02G17830CsaV3_2G025430Cucumber (Chinese Long) v3cpicucB081
CSPI02G17830Cla97C08G160870Watermelon (97103) v2cpiwmbB166
CSPI02G17830Bhi04G000470Wax gourdcpiwgoB159
CSPI02G17830Cucsa.394980Cucumber (Gy14) v1cgycpiB578
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G17830Wild cucumber (PI 183967)cpicpiB008
CSPI02G17830Wild cucumber (PI 183967)cpicpiB076
CSPI02G17830Cucumber (Gy14) v1cgycpiB073
CSPI02G17830Cucurbita maxima (Rimu)cmacpiB167
CSPI02G17830Cucurbita maxima (Rimu)cmacpiB412
CSPI02G17830Cucurbita maxima (Rimu)cmacpiB700
CSPI02G17830Cucurbita maxima (Rimu)cmacpiB793
CSPI02G17830Cucurbita moschata (Rifu)cmocpiB152
CSPI02G17830Cucurbita moschata (Rifu)cmocpiB400
CSPI02G17830Cucurbita moschata (Rifu)cmocpiB693
CSPI02G17830Cucurbita moschata (Rifu)cmocpiB782
CSPI02G17830Cucumber (Chinese Long) v2cpicuB082
CSPI02G17830Melon (DHL92) v3.5.1cpimeB089
CSPI02G17830Cucurbita pepo (Zucchini)cpecpiB030
CSPI02G17830Cucurbita pepo (Zucchini)cpecpiB092
CSPI02G17830Cucurbita pepo (Zucchini)cpecpiB383
CSPI02G17830Cucurbita pepo (Zucchini)cpecpiB814
CSPI02G17830Bottle gourd (USVL1VR-Ls)cpilsiB116
CSPI02G17830Melon (DHL92) v3.6.1cpimedB080
CSPI02G17830Melon (DHL92) v3.6.1cpimedB095
CSPI02G17830Cucumber (Gy14) v2cgybcpiB057
CSPI02G17830Cucumber (Gy14) v2cgybcpiB207
CSPI02G17830Silver-seed gourdcarcpiB0209
CSPI02G17830Silver-seed gourdcarcpiB0656
CSPI02G17830Silver-seed gourdcarcpiB0726
CSPI02G17830Cucumber (Chinese Long) v3cpicucB105
CSPI02G17830Wax gourdcpiwgoB197