Lsi08G015980 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G015980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Chaperone protein dnaJ-like protein
Location	chr08 : 23944109 .. 23944399 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCAATTGCTCTGAGTCAGCTTGCCACCGGCCTGAGCGTGCTGGCCGGCGCCGTGGTGGTGAAGTCCGTCATCGAACAGAAACTACCGACGGCCGGGATGATGCCGAGGTGTCCGGCTTGTAATGGCACGGGTCGGGTCACATGCCTATGTGCCCGGTGGTCGGATGGAGATGTTGGGTGCCGATCATGTTCCGGGTCGGGTCGGATGTCGTGCAGAAGTTGTGGTGGTGGCGGAAGAGGGCGGCCGATCACCTTACAATTATCGACTAACCAACCTAAATTTTGA

mRNA sequence

ATGGATCCAATTGCTCTGAGTCAGCTTGCCACCGGCCTGAGCGTGCTGGCCGGCGCCGTGGTGGTGAAGTCCGTCATCGAACAGAAACTACCGACGGCCGGGATGATGCCGAGGTGTCCGGCTTGTAATGGCACGGGTCGGGTCACATGCCTATGTGCCCGGTGGTCGGATGGAGATGTTGGGTGCCGATCATGTTCCGGGTCGGGTCGGATGTCGTGCAGAAGTTGTGGTGGTGGCGGAAGAGGGCGGCCGATCACCTTACAATTATCGACTAACCAACCTAAATTTTGA

Coding sequence (CDS)

ATGGATCCAATTGCTCTGAGTCAGCTTGCCACCGGCCTGAGCGTGCTGGCCGGCGCCGTGGTGGTGAAGTCCGTCATCGAACAGAAACTACCGACGGCCGGGATGATGCCGAGGTGTCCGGCTTGTAATGGCACGGGTCGGGTCACATGCCTATGTGCCCGGTGGTCGGATGGAGATGTTGGGTGCCGATCATGTTCCGGGTCGGGTCGGATGTCGTGCAGAAGTTGTGGTGGTGGCGGAAGAGGGCGGCCGATCACCTTACAATTATCGACTAACCAACCTAAATTTTGA

Protein sequence

MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDVGCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQPKF

Homology

[Close]

BLAST of Lsi08G015980 vs. TrEMBL
Match: A0A0A0LKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351540 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.5e-39
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          MD IALSQLATGLSVLAGAVVVKSVIEQKLP AG MPRCP C G+GRVTC+C RWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQ 94
          GCRSCSGSGRMSCRSCGGGGRGRPIT+QLS +Q
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQ 93

[Close]

BLAST of Lsi08G015980 vs. TrEMBL
Match: W9RCB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-32
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M+PI L+Q+ATGLSVL GAV+VKSV++QK P AG  PRCP+CNGTGRVTCLC+RWSDGD+
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVTCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR+C+GSGRM C SCGG G GRPIT Q+S  +P
Sbjct: 61 GCRTCAGSGRMGCSSCGGSGTGRPITAQISVRRP 93

[Close]

BLAST of Lsi08G015980 vs. TrEMBL
Match: F6HGA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03640 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.0e-32
Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M PI L+QLATGLSVLAGAV+VKSV++QK P AG  PRC +CNGTGRV+CLC+RWSDGDV
Sbjct: 1  MSPIVLTQLATGLSVLAGAVLVKSVMDQK-PMAGPFPRCSSCNGTGRVSCLCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQPK 96
          GCR+C+GSGRM+C SCGG G GRPI +Q+S   PK
Sbjct: 61 GCRTCAGSGRMACSSCGGTGTGRPIPIQISARPPK 94

[Close]

BLAST of Lsi08G015980 vs. TrEMBL
Match: A0A059D890_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.5e-31
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M PI L+QLATGLSVLAGA +VKSV++QK P AG  PRCP+CNGTGRV C+C+RWSDGDV
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQK-PMAGPFPRCPSCNGTGRVACMCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR+C+GSGRM C SCGG G GRP+ +QLS  +P
Sbjct: 61 GCRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRP 93

[Close]

BLAST of Lsi08G015980 vs. TrEMBL
Match: A0A067GQ88_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034351mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-30
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M P  L+Q+ATGLSVLAGA +VKSV++QK P AG   RCP+CNGTGRVTC+C RWSDGDV
Sbjct: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQK-PMAGPFDRCPSCNGTGRVTCMCTRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR+C+GSGRM+CRSCGG G GRP+ +QLS  +P
Sbjct: 61 GCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRP 93

[Close]

BLAST of Lsi08G015980 vs. TAIR10
Match: AT5G43260.1 (AT5G43260.1 chaperone protein dnaJ-related)

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-33
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M PI ++QLATG+SVLAGAV +KSV++QK P AG  PRCP CNGTGRVTC C+RWSDGDV
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQK-PMAGQFPRCPTCNGTGRVTCFCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR CSGSGR +C +CGG G GRP+  Q++   P
Sbjct: 61 GCRRCSGSGRAACSNCGGSGTGRPLPAQITVQPP 93

[Close]

BLAST of Lsi08G015980 vs. NCBI nr
Match: gi|449450367|ref|XP_004142934.1| (PREDICTED: uncharacterized protein LOC101220122 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-39
Identity = 82/93 (88.17%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          MD IALSQLATGLSVLAGAVVVKSVIEQKLP AG MPRCP C G+GRVTC+C RWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQ 94
          GCRSCSGSGRMSCRSCGGGGRGRPIT+QLS +Q
Sbjct: 61 GCRSCSGSGRMSCRSCGGGGRGRPITVQLSMSQ 93

[Close]

BLAST of Lsi08G015980 vs. NCBI nr
Match: gi|703112866|ref|XP_010100228.1| (hypothetical protein L484_001360 [Morus notabilis])

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-32
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M+PI L+Q+ATGLSVL GAV+VKSV++QK P AG  PRCP+CNGTGRVTCLC+RWSDGD+
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQK-PMAGPFPRCPSCNGTGRVTCLCSRWSDGDI 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR+C+GSGRM C SCGG G GRPIT Q+S  +P
Sbjct: 61 GCRTCAGSGRMGCSSCGGSGTGRPITAQISVRRP 93

[Close]

BLAST of Lsi08G015980 vs. NCBI nr
Match: gi|359473751|ref|XP_003631355.1| (PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera])

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-31
Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M PI L+QLATGLSVLAGAV+VKSV++QK P AG  PRC +CNGTGRV+CLC+RWSDGDV
Sbjct: 1  MSPIVLTQLATGLSVLAGAVLVKSVMDQK-PMAGPFPRCSSCNGTGRVSCLCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQPK 96
          GCR+C+GSGRM+C SCGG G GRPI +Q+S   PK
Sbjct: 61 GCRTCAGSGRMACSSCGGTGTGRPIPIQISARPPK 94

[Close]

BLAST of Lsi08G015980 vs. NCBI nr
Match: gi|719977986|ref|XP_010249022.1| (PREDICTED: uncharacterized protein LOC104591728 [Nelumbo nucifera])

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-31
Identity = 69/94 (73.40%), Postives = 78/94 (82.98%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M PI +SQLATGL VLAGAV+VKSV+EQK P AG  PRCP+CNGTGRV C+C RWSDGDV
Sbjct: 1  MGPIVVSQLATGLGVLAGAVLVKSVMEQK-PMAGPWPRCPSCNGTGRVNCMCTRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR+C+GSGRM+C SCGG G GRPI +QLS   P
Sbjct: 61 GCRTCAGSGRMACSSCGGTGTGRPIPVQLSVRSP 93

[Close]

BLAST of Lsi08G015980 vs. NCBI nr
Match: gi|702278098|ref|XP_010044812.1| (PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis])

HSP 1 Score: 142.1 bits (357), Expect = 5.0e-31
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 1  MDPIALSQLATGLSVLAGAVVVKSVIEQKLPTAGMMPRCPACNGTGRVTCLCARWSDGDV 60
          M PI L+QLATGLSVLAGA +VKSV++QK P AG  PRCP+CNGTGRV C+C+RWSDGDV
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQK-PMAGPFPRCPSCNGTGRVACMCSRWSDGDV 60

Query: 61 GCRSCSGSGRMSCRSCGGGGRGRPITLQLSTNQP 95
          GCR+C+GSGRM C SCGG G GRP+ +QLS  +P
Sbjct: 61 GCRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRP 93

The following BLAST results are available for this feature:

BLAST of Lsi08G015980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G015980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKQ8_CUCSA	3.5e-39	88.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351540 PE=4 SV=1	[more]
W9RCB8_9ROSA	1.4e-32	72.34	Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1	[more]
F6HGA7_VITVI	7.0e-32	72.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03640 PE=4 SV=...	[more]
A0A059D890_EUCGR	3.5e-31	71.28	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1	[more]
A0A067GQ88_CITSI	1.0e-30	70.21	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034351mg PE=4 SV=1	[more]

BLAST of Lsi08G015980 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43260.1	4.3e-33	67.02	chaperone protein dnaJ-related	[more]

BLAST of Lsi08G015980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450367\|ref\|XP_004142934.1\|	5.0e-39	88.17	PREDICTED: uncharacterized protein LOC101220122 [Cucumis sativus]	[more]
gi\|703112866\|ref\|XP_010100228.1\|	2.0e-32	72.34	hypothetical protein L484_001360 [Morus notabilis]	[more]
gi\|359473751\|ref\|XP_003631355.1\|	1.0e-31	72.63	PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]	[more]
gi\|719977986\|ref\|XP_010249022.1\|	2.2e-31	73.40	PREDICTED: uncharacterized protein LOC104591728 [Nelumbo nucifera]	[more]
gi\|702278098\|ref\|XP_010044812.1\|	5.0e-31	71.28	PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding
GO:0031072	heat shock protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001305	HSP_DnaJ_Cys-rich_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G015980.1	Lsi08G015980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001305	Heat shock protein DnaJ, cysteine-rich domain	GENE3D	G3DSA:2.10.230.10		coord: 35..81 score: 8.
None	No IPR available	PANTHER	PTHR34687	FAMILY NOT NAMED	coord: 1..95 score: 1.8
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..95 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G015980	Csa2G351540	Cucumber (Chinese Long) v2	culsiB142
Lsi08G015980	CSPI02G17830	Wild cucumber (PI 183967)	cpilsiB141
Lsi08G015980	Cucsa.394980	Cucumber (Gy14) v1	cgylsiB637
Lsi08G015980	Cla022690	Watermelon (97103) v1	lsiwmB465
Lsi08G015980	MELO3C010741	Melon (DHL92) v3.5.1	lsimeB469
Lsi08G015980	ClCG08G017160	Watermelon (Charleston Gray)	lsiwcgB438
Lsi08G015980	MELO3C010741.2	Melon (DHL92) v3.6.1	lsimedB489
Lsi08G015980	Cla97C08G160870	Watermelon (97103) v2	lsiwmbB444
Lsi08G015980	Bhi04G000470	Wax gourd	lsiwgoB591
Lsi08G015980	Cp4.1LG07g00760	Cucurbita pepo (Zucchini)	cpelsiB689
Lsi08G015980	CsaV3_2G025430	Cucumber (Chinese Long) v3	cuclsiB155

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G015980	Wax gourd	lsiwgoB620
Lsi08G015980	Bottle gourd (USVL1VR-Ls)	lsilsiB149
Lsi08G015980	Cucumber (Gy14) v1	cgylsiB077
Lsi08G015980	Cucurbita maxima (Rimu)	cmalsiB188
Lsi08G015980	Cucurbita maxima (Rimu)	cmalsiB394
Lsi08G015980	Cucurbita maxima (Rimu)	cmalsiB704
Lsi08G015980	Cucurbita maxima (Rimu)	cmalsiB739
Lsi08G015980	Cucurbita moschata (Rifu)	cmolsiB178
Lsi08G015980	Cucurbita moschata (Rifu)	cmolsiB380
Lsi08G015980	Cucurbita moschata (Rifu)	cmolsiB698
Lsi08G015980	Cucurbita moschata (Rifu)	cmolsiB731
Lsi08G015980	Cucurbita pepo (Zucchini)	cpelsiB045
Lsi08G015980	Cucurbita pepo (Zucchini)	cpelsiB100
Lsi08G015980	Cucurbita pepo (Zucchini)	cpelsiB383
Lsi08G015980	Cucurbita pepo (Zucchini)	cpelsiB691
Lsi08G015980	Wild cucumber (PI 183967)	cpilsiB392
Lsi08G015980	Cucumber (Chinese Long) v2	culsiB388
Lsi08G015980	Melon (DHL92) v3.5.1	lsimeB462
Lsi08G015980	Melon (DHL92) v3.5.1	lsimeB465
Lsi08G015980	Watermelon (Charleston Gray)	lsiwcgB436
Lsi08G015980	Watermelon (97103) v1	lsiwmB498
Lsi08G015980	Cucumber (Gy14) v2	cgyblsiB129
Lsi08G015980	Cucumber (Gy14) v2	cgyblsiB356
Lsi08G015980	Melon (DHL92) v3.6.1	lsimedB481
Lsi08G015980	Melon (DHL92) v3.6.1	lsimedB484
Lsi08G015980	Silver-seed gourd	carlsiB164
Lsi08G015980	Silver-seed gourd	carlsiB568
Lsi08G015980	Silver-seed gourd	carlsiB630
Lsi08G015980	Cucumber (Chinese Long) v3	cuclsiB413