Csa2G287170 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G287170
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Branched-chain amino acid aminotransferase, putative
Location	Chr2 : 13735284 .. 13736401 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAACTAGAAAAGAAAAAGAAGGGAATACTTGAGCATTGGAAAATCGACGATATTCCCAAAGCTTTTTTCCTTTGTTAAATTGCTTTTGAAAGTTGATTAGCCTTTAGAACACAAAAAGAAGAGAGAGAGAGAGATGTGTATGCTAGTGGTTTGTAAGGATTGCAGCAAATATACATGGAAGGGGTGTGGCCGCCACCTTCCTGGTCTCTACAAGAGCGTAGAGAAGGGGAAGCACTGCAACTGCCACCCTTGGCCGGGTGTCGTCGTGCCACCGGAAGATGTCCCCGACACGACGAAGCCATCGCAACCAGTGCAACCATCATCTGTCTCTACAGGTATGCTGCTATATGAACTAAACTTGTTCGAATAACATGATCTTTTTTGGAATGAAATCTGGGGTTTAGAAACATTTGCATAATTTGTTTTTGGAGTTCTTCTTTTCTTCTTGCTTGTTGTTCTTTGAGATTAATTGGATATATAGATGAGGGATTTGAGGAAGGATTGTTAACAAAGTTTGAGGATTTGATAAAATTGGTTATTATGTGGAGACGATATCTTGAGATCTCAAATACAATGTTTAACAATTCAAATGTTTATTTAAACAAAAATGGAAACCATGAATTAAAAATGGTGAGAAAAACAAATTAAATTATCATCTGCACAAAATCTATGAATTTAAAAACTAATTGTTCACAAAATAAATTTAATTCTCCTCGTGGTAATAAGTTTGATTAATTTTGTTAGATTTGTAACTAATGTTTTATTATTTCTTTAAAGAATGATACAAACAAATATAAACCACAGAATATGTGTGGAGTGTAGACTGATGAATAGTTGCTATCATTTAAAACTGTTTAGAGAGATTTGATGATGGAAGAGACGGATAGTAAAGTTGTAAAAATATATGAATTTTCGTAGGCAGTGAAAGTTGGAGTTGATTTGTGCAGGTAAGACAGTTAAGTAGGACACTATGGGAGTAAGCCAAACTACAACTATTACTACCTCTCTTCACTTGTCAAGGTTGTCACTTCAAATATTTCATATACTATTATTATTCCATAAATAACGAAGGGCTTTGTAAAGGATGCAATCGTGTCCAATTCTAAATCAATCA

mRNA sequence

ATGTGTATGCTAGTGGTTTGTAAGGATTGCAGCAAATATACATGGAAGGGGTGTGGCCGCCACCTTCCTGGTCTCTACAAGAGCGTAGAGAAGGGGAAGCACTGCAACTGCCACCCTTGGCCGGGTGTCGTCGTGCCACCGGAAGATGTCCCCGACACGACGAAGCCATCGCAACCAGTGCAACCATCATCTGTCTCTACAGGTAAGACAGTTAAGTAG

Coding sequence (CDS)

ATGTGTATGCTAGTGGTTTGTAAGGATTGCAGCAAATATACATGGAAGGGGTGTGGCCGCCACCTTCCTGGTCTCTACAAGAGCGTAGAGAAGGGGAAGCACTGCAACTGCCACCCTTGGCCGGGTGTCGTCGTGCCACCGGAAGATGTCCCCGACACGACGAAGCCATCGCAACCAGTGCAACCATCATCTGTCTCTACAGGTAAGACAGTTAAGTAG

Protein sequence

MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPVQPSSVSTGKTVK*

Homology

[Close]

BLAST of Csa2G287170 vs. TrEMBL
Match: A0A0A0LJK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60

Query: 61 QPSSVSTGKTVK 73
          QPSSVSTGKTVK
Sbjct: 61 QPSSVSTGKTVK 72

[Close]

BLAST of Csa2G287170 vs. TrEMBL
Match: A0A0L9UR73_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g038300 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-14
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V C+ C +YTW GCG HL  LY S+++G HC C  WPGVV+PP      T+  QP 
Sbjct: 1  MCYRVECRSCGRYTWGGCGNHLTTLYASIDEGMHCTCRSWPGVVIPPRSTDTATQ--QPT 60

Query: 61 QPSSVSTGK 70
          QP++ S GK
Sbjct: 61 QPNNSSQGK 67

[Close]

BLAST of Csa2G287170 vs. TrEMBL
Match: U5GFL5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s13900g PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-14
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V CK C KY+W+GCG HL  LY S++KGKHC C  WPGVVVP E+      PS  V
Sbjct: 1  MCYRVECKQCKKYSWRGCGEHLATLYASIDKGKHCLCKSWPGVVVPAEETATEQTPSGVV 60

Query: 61 QPSSVST 68
            S+ +T
Sbjct: 61 STSATTT 67

[Close]

BLAST of Csa2G287170 vs. TrEMBL
Match: V4SJJ7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027038mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.5e-14
Identity = 38/69 (55.07%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V CK C KYTW GCG+HL  LY S+E GKHC C  WPGVVVP       T   QP 
Sbjct: 1  MCFRVDCKQCGKYTWGGCGKHLATLYNSIESGKHCMCRSWPGVVVPAPAAQTATVQLQPS 60

Query: 61 QPS-SVSTG 69
          + S S +TG
Sbjct: 61 RASASTATG 69

[Close]

BLAST of Csa2G287170 vs. TrEMBL
Match: A0A0S3T5E3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G172400 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V C+ C +YTW GCG HL  LY S+++G HC C  WPGVV+PP      T+  QP 
Sbjct: 1  MCYRVECRSCGRYTWGGCGNHLTTLYASIDEGMHCTCRSWPGVVIPPRSTDTATQ--QPT 60

Query: 61 QPSSVS 67
          QP++ S
Sbjct: 61 QPNNSS 64

[Close]

BLAST of Csa2G287170 vs. NCBI nr
Match: gi|700206916|gb|KGN62035.1| (hypothetical protein Csa_2G287170 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60

Query: 61 QPSSVSTGKTVK 73
          QPSSVSTGKTVK
Sbjct: 61 QPSSVSTGKTVK 72

[Close]

BLAST of Csa2G287170 vs. NCBI nr
Match: gi|920701852|gb|KOM45077.1| (hypothetical protein LR48_Vigan06g038300 [Vigna angularis])

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V C+ C +YTW GCG HL  LY S+++G HC C  WPGVV+PP      T+  QP 
Sbjct: 1  MCYRVECRSCGRYTWGGCGNHLTTLYASIDEGMHCTCRSWPGVVIPPRSTDTATQ--QPT 60

Query: 61 QPSSVSTGK 70
          QP++ S GK
Sbjct: 61 QPNNSSQGK 67

[Close]

BLAST of Csa2G287170 vs. NCBI nr
Match: gi|566171228|ref|XP_006383289.1| (hypothetical protein POPTR_0005s13900g [Populus trichocarpa])

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-14
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V CK C KY+W+GCG HL  LY S++KGKHC C  WPGVVVP E+      PS  V
Sbjct: 1  MCYRVECKQCKKYSWRGCGEHLATLYASIDKGKHCLCKSWPGVVVPAEETATEQTPSGVV 60

Query: 61 QPSSVST 68
            S+ +T
Sbjct: 61 STSATTT 67

[Close]

BLAST of Csa2G287170 vs. NCBI nr
Match: gi|567866325|ref|XP_006425785.1| (hypothetical protein CICLE_v10027038mg [Citrus clementina])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 38/69 (55.07%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V CK C KYTW GCG+HL  LY S+E GKHC C  WPGVVVP       T   QP 
Sbjct: 1  MCFRVDCKQCGKYTWGGCGKHLATLYNSIESGKHCMCRSWPGVVVPAPAAQTATVQLQPS 60

Query: 61 QPS-SVSTG 69
          + S S +TG
Sbjct: 61 RASASTATG 69

[Close]

BLAST of Csa2G287170 vs. NCBI nr
Match: gi|965614524|dbj|BAU00157.1| (hypothetical protein VIGAN_10172400 [Vigna angularis var. angularis])

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDTTKPSQPV 60
          MC  V C+ C +YTW GCG HL  LY S+++G HC C  WPGVV+PP      T+  QP 
Sbjct: 1  MCYRVECRSCGRYTWGGCGNHLTTLYASIDEGMHCTCRSWPGVVIPPRSTDTATQ--QPT 60

Query: 61 QPSSVS 67
          QP++ S
Sbjct: 61 QPNNSS 64

The following BLAST results are available for this feature:

BLAST of Csa2G287170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJK5_CUCSA	2.2e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1	[more]
A0A0L9UR73_PHAAN	1.0e-14	50.72	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g038300 PE=4 SV=1	[more]
U5GFL5_POPTR	1.3e-14	53.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s13900g PE=4 SV=1	[more]
V4SJJ7_9ROSI	8.5e-14	55.07	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027038mg PE=4 SV=1	[more]
A0A0S3T5E3_PHAAN	1.5e-13	50.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G172400 PE=...	[more]

BLAST of Csa2G287170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206916\|gb\|KGN62035.1\|	3.2e-38	100.00	hypothetical protein Csa_2G287170 [Cucumis sativus]	[more]
gi\|920701852\|gb\|KOM45077.1\|	1.4e-14	50.72	hypothetical protein LR48_Vigan06g038300 [Vigna angularis]	[more]
gi\|566171228\|ref\|XP_006383289.1\|	1.9e-14	53.73	hypothetical protein POPTR_0005s13900g [Populus trichocarpa]	[more]
gi\|567866325\|ref\|XP_006425785.1\|	1.2e-13	55.07	hypothetical protein CICLE_v10027038mg [Citrus clementina]	[more]
gi\|965614524\|dbj\|BAU00157.1\|	2.1e-13	50.00	hypothetical protein VIGAN_10172400 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0006550	isoleucine catabolic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0006552	leucine catabolic process
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0006574	valine catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004084	branched-chain-amino-acid transaminase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU098436	cucumber EST collection version 3.0	transcribed_cluster
CU098598	cucumber EST collection version 3.0	transcribed_cluster
CU098719	cucumber EST collection version 3.0	transcribed_cluster
CU099761	cucumber EST collection version 3.0	transcribed_cluster
CU099781	cucumber EST collection version 3.0	transcribed_cluster
CU105135	cucumber EST collection version 3.0	transcribed_cluster
CU126041	cucumber EST collection version 3.0	transcribed_cluster
CU127593	cucumber EST collection version 3.0	transcribed_cluster
CU131322	cucumber EST collection version 3.0	transcribed_cluster
CU132927	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G287170.1	Csa2G287170.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU099781	CU099781	transcribed_cluster
CU098436	CU098436	transcribed_cluster
CU098719	CU098719	transcribed_cluster
CU099761	CU099761	transcribed_cluster
CU098598	CU098598	transcribed_cluster
CU105135	CU105135	transcribed_cluster
CU131322	CU131322	transcribed_cluster
CU126041	CU126041	transcribed_cluster
CU132927	CU132927	transcribed_cluster
CU127593	CU127593	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34724	FAMILY NOT NAMED	coord: 2..48 score: 5.3
None	No IPR available	PANTHER	PTHR34724:SF2	SUBFAMILY NOT NAMED	coord: 2..48 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G287170	Cla020166	Watermelon (97103) v1	cuwmB140
Csa2G287170	ClCG02G013040	Watermelon (Charleston Gray)	cuwcgB119
Csa2G287170	Lsi10G005920	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G287170	Cla97C02G038710	Watermelon (97103) v2	cuwmbB115
Csa2G287170	Bhi10G001797	Wax gourd	cuwgoB175
Csa2G287170	CSPI02G14570	Wild cucumber (PI 183967)	cpicuB065
Csa2G287170	Cucsa.366580	Cucumber (Gy14) v1	cgycuB513
Csa2G287170	CmaCh02G005620	Cucurbita maxima (Rimu)	cmacuB582
Csa2G287170	CmoCh02G005710	Cucurbita moschata (Rifu)	cmocuB571
Csa2G287170	CsGy2G014540	Cucumber (Gy14) v2	cgybcuB056
Csa2G287170	Carg11637	Silver-seed gourd	carcuB1070

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G287170	Cucurbita pepo (Zucchini)	cpecuB268
Csa2G287170	Cucurbita pepo (Zucchini)	cpecuB710
Csa2G287170	Melon (DHL92) v3.6.1	cumedB090
Csa2G287170	Silver-seed gourd	carcuB1006
Csa2G287170	Cucurbita maxima (Rimu)	cmacuB543
Csa2G287170	Cucurbita moschata (Rifu)	cmocuB532
Csa2G287170	Melon (DHL92) v3.5.1	cumeB099