Cla020166 (gene) Watermelon (97103) v1

Overview
NameCla020166
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 22955285 .. 22957055 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTATATCTATCATATGAACTCAACTTATTTGATAGTTAGTCTTTGTATATATTAATTTTTCTTTTCGAAATAGACATACAATTTGAAACTAATAAAAGTAGTTCTAAAAACTTTTTTGTTTTTAAAATTTGGCTAAGAATTTAAAAATGTTTATCTAAAAATATGAAAACAATTAAAAATTTATGAGAAAACAAACATAATTTTCGAAAATTAAAAACAAAAAACAATTATTTACGAAACATAGTTTTCCTTCTTTTTTCTTATTGATATTGAACAATGGACTTATTTACAAAACCTAGTTTTCCTTCCTTTTTCGTGAATATTGAACTATAAACTTCTTGGTTGCTAACACATCTATATATAAATTGGATTATACTCACTTTAACCTATAAATCTCAACTCCAACTTAAAAAATAATTATTACAATCACATTTCCAAATTGGAATAAAGTTGCCGAAATAAATTGATGCGAAAGTTGGAGAGTAAGAAAACTCTATATATAAATATTAGTTAATAATAAGAATAGAATTATGAGTAATAATAAAAAATTGAGTGGGGCGAAGAATGGGAATGAAAAATACACAATAAAAGCTTATTATTATGATTTATGAAGGTTGGGGCTAAGGTCAAATGTGGTAGTAACTTGGAAATTAAATGGTCTCCACATAAAAGTTAATGGTTTAGGATGAAATGTGGGTTAAAATTTTGGATGAGGATGGAGAAGGAATATTTCATAACAAAAATAGAATTTAGTAATAGGCTTATAAACAATTTTGAAACAAAGGGTAAGGATAAGCCTTGGGCACAAACATGTATGACATCAAATCACTCCTCATTTTAAAAAATACTCAAATAAATGCTTTTAAGAATTTAAACTCAATTTTAATATCATGAAAAATGCGTTTAAAAATATAAAATTAAAAATTAAATTGATTTGGAGTAATTAAAAGTGTATTTTAGAGTAATTTTAAATACAGTAAAAATGATTTTGATCATTTGAAAATCACTTCCATATATGTTAGTAAAATACATCATACAAAATAAAGTAATATTGAAAATTTTGATTAAAATCACTTTTTATAAAAAAATTAAGGACTAAAATCTCCAGGAGCAAAATTGAAAAACTTGAAATTGTATGGAAAAGTTTAGAGACAAAAATAAAATAAGTTTCGGAAACTAGAATATAAGAGTACTATCAAGTTGGCCCAAAAAAAATTGCATATATATTCATTATAGTTGTCTTTTTTTTTTTTTTTTGGTTAAATTACAAATTTGGTACCTATGATTATCAGTAACAGAAAGAGTTTACTTCCTATAATTTTAAAAGTTTTTTTCAAAAACGGACTATTTAGGAATATCTTTATTAAATCATAATGACTAAATTTGAAAAACAGAAAACTATATAAAAACTAAATTGTTATCAAACGGGGTGATTTTAAGATGAATGGTAAATCCAAATTTATGAATTTTGGTGTTTGTAATTTACTTATATATTTTGTAGGCATTGAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAGGAAGCATAGGGAGTAG

mRNA sequence

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGCATTGAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAGGAAGCATAGGGAGTAG

Coding sequence (CDS)

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGCATTGAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAGGAAGCATAGGGAGTAG

Protein sequence

MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQSTNPKSFVPTGIESWSWFVQVRQLLRKHRE
Homology
[Close]
BLAST of Cla020166 vs. TrEMBL
Match: A0A0A0LJK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-22
Identity = 51/70 (72.86%), Postives = 55/70 (78.57%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTG 71
            P S V TG
Sbjct: 61 VQPSS-VSTG 68

[Close]
BLAST of Cla020166 vs. TrEMBL
Match: U5G8E8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-15
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKSFVPTGIES 74
           +  S      +S
Sbjct: 61 LSANSATKAAADS 72

[Close]
BLAST of Cla020166 vs. TrEMBL
Match: U5GAR3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.2e-15
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVV-PPEVVADTKTQPTQ 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+   E  A+ +     
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETAAEQQPYRAL 60

Query: 61 STNPKSFVPTGIES 74
          S N  +    GI +
Sbjct: 61 SANSATKAAAGISA 74

[Close]
BLAST of Cla020166 vs. TrEMBL
Match: B9HEK4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.4e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of Cla020166 vs. TrEMBL
Match: U5G557_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.4e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of Cla020166 vs. NCBI nr
Match: gi|700206916|gb|KGN62035.1| (hypothetical protein Csa_2G287170 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-22
Identity = 51/70 (72.86%), Postives = 55/70 (78.57%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTG 71
            P S V TG
Sbjct: 61 VQPSS-VSTG 68

[Close]
BLAST of Cla020166 vs. NCBI nr
Match: gi|566180887|ref|XP_006380739.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 88.2 bits (217), Expect = 7.9e-15
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKSFVPTGIES 74
           +  S      +S
Sbjct: 61 LSANSATKAAADS 72

[Close]
BLAST of Cla020166 vs. NCBI nr
Match: gi|566180889|ref|XP_006380740.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVV-PPEVVADTKTQPTQ 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+   E  A+ +     
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETAAEQQPYRAL 60

Query: 61 STNPKSFVPTGIES 74
          S N  +    GI +
Sbjct: 61 SANSATKAAAGISA 74

[Close]
BLAST of Cla020166 vs. NCBI nr
Match: gi|224094592|ref|XP_002310185.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of Cla020166 vs. NCBI nr
Match: gi|566180884|ref|XP_006380738.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

The following BLAST results are available for this feature:
BLAST of Cla020166 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJK5_CUCSA2.1e-2272.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1[more]
U5G8E8_POPTR5.5e-1550.68Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
U5GAR3_POPTR7.2e-1550.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
B9HEK4_POPTR9.4e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
U5G557_POPTR9.4e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
BLAST of Cla020166 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206916|gb|KGN62035.1|3.0e-2272.86hypothetical protein Csa_2G287170 [Cucumis sativus][more]
gi|566180887|ref|XP_006380739.1|7.9e-1550.68hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
gi|566180889|ref|XP_006380740.1|1.0e-1450.00hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
gi|224094592|ref|XP_002310185.1|1.3e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
gi|566180884|ref|XP_006380738.1|1.3e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0008150 biological_process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0006574 valine catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016301 kinase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0004084 branched-chain-amino-acid transaminase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU75607watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020166Cla020166.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU75607WMU75607transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34724FAMILY NOT NAMEDcoord: 2..73
score: 2.1
NoneNo IPR availablePANTHERPTHR34724:SF2SUBFAMILY NOT NAMEDcoord: 2..73
score: 2.1