ClCG02G013040 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G013040
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionBranched-chain amino acid aminotransferase, putative
LocationCG_Chr02 : 26810492 .. 26812263 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTATATCTATCATATGAACTCAACTTATTTGATAGTTAGTCTTTGTATATATTAATTTTTCTTTTCGAAATAGACATACAATTTGAAACTAATAAAAGTAGTTCTAAAAACTTTTTTGTTTTTAAAATTTGGCTAAGAATTTAAAAATGTTTATCTAAAAATATGAAAACAATTAAAAATTTATGAGAAAACAAACATAATTTTCGAAAATTAAAAACAAAAAACAATTATTTACGAAACATAGTTTTCCTTCTTTTTTCTTATTGATATTGAACAATGGACTTATTTACAAAACCTAGTTTTCCTTCCTTTTTCGTGAATATTGAACTATAAACTTCTTGGTTGCTAACACATCTATATATAAATTGGATTATACTCACTTTAACCTATAAATCTCAACTCCAACTTAAAAAATAATTATTACAATCACATTTCCAAATTGGAATAAAGTTGCCGAAATAAATTGATGCGAAAGTTGGAGAGTAAGAAAACTCTATATATAAATATTAGTTAATAATAAGAATAGAATTATGAGTAATAATAAAAAATTGAGTGGGGCGAAGAATGGGAATGAAAAATACACAATAAAAGCTTATTATTATGATTTATGAAGGTTGGGGCTAAGGTCAAATGTGGTAGTAACTTGGAAATTAAATGGTCTCCACATAAAAGTTAATGGTTTAGGATGAAATGTGGGTTAAAATTTTGGATGAGGATGGAGAAGGAATATTTCATAACAAAAATAGAATTTAGTAATAGGCTTATAAACAATTTTGAAACAAAGGGTAAGGATAAGCCTTGGGCACAAACATGTATGACATCAAATCACTCCTCATTTTAAAAAATACTCAAATAAATGCTTTTAAGAATTTAAACTCAATTTTAATATCATGAAAAATGCGTTTAAAAATATAAAATTAAAAATTAAATTGATTTGGAGTAATTAAAAGTGTATTTTAGAGTAATTTTAAATACAGTAAAAATGATTTTGATCATTTGAAAATCACTTCCATATATGTTAGTAAAATACATCATACAAAATAAAGTAATATTGAAAATTTTGATTAAAATCACTTTTTATAAAAAAATTAAGGACTAAAATCTCCAGGAGCAAAATTGAAAAACTTGAAATTGTATGGAAAAGTTTAGAGACAAAAATAAAATAAGCTTCGGAAACTAGAATATAAGAGTACTATCAAGTTGGCCCAAAAAAAAATTGCATATATATTCACTATAGTTGTTTTTTTTTTTTTTTTTTTTTTTTTGGTTAAATTACAAATTTGGTACCTATGATTATCGGTAACAGAAAGAGTTTACTTCCTATAATTTTAAAAGTTTTTTTCAAAAACGGACTATTTAGGAATATCTTTATTAAATCATAATGACTAAATTTGAAAAACAGAAAACTATATAAAAACTAAATTGTTATCAAACGGGGTGATTTTAAGATGAATGGTAAATCCAAATTTATGAATTTTGGTGTTTGTAATTTACTTATATATTTTGTAGGCATTGAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAGGAAGCATAG

mRNA sequence

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTAAGACAGTTGTTAAGGAAGCATAG

Coding sequence (CDS)

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTAAGACAGTTGTTAAGGAAGCATAG

Protein sequence

MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQSTNPKSFVPTGKTVVKEA
Homology
[Close]
BLAST of ClCG02G013040 vs. TrEMBL
Match: A0A0A0LJK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.3e-24
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTGKTV 74
            P S V TGKTV
Sbjct: 61 VQPSS-VSTGKTV 71

[Close]
BLAST of ClCG02G013040 vs. TrEMBL
Match: U5G8E8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040 vs. TrEMBL
Match: B9HEK4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040 vs. TrEMBL
Match: U5GAR3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040 vs. TrEMBL
Match: U5G557_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|700206916|gb|KGN62035.1| (hypothetical protein Csa_2G287170 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 6.2e-24
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTGKTV 74
            P S V TGKTV
Sbjct: 61 VQPSS-VSTGKTV 71

[Close]
BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|224094592|ref|XP_002310185.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|566180887|ref|XP_006380739.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|566180889|ref|XP_006380740.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|566180884|ref|XP_006380738.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

The following BLAST results are available for this feature:
BLAST of ClCG02G013040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJK5_CUCSA4.3e-2473.97Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1[more]
U5G8E8_POPTR8.1e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
B9HEK4_POPTR8.1e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
U5GAR3_POPTR8.1e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
U5G557_POPTR8.1e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
BLAST of ClCG02G013040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206916|gb|KGN62035.1|6.2e-2473.97hypothetical protein Csa_2G287170 [Cucumis sativus][more]
gi|224094592|ref|XP_002310185.1|1.2e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
gi|566180887|ref|XP_006380739.1|1.2e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
gi|566180889|ref|XP_006380740.1|1.2e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
gi|566180884|ref|XP_006380738.1|1.2e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0008150 biological_process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0006574 valine catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016301 kinase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0004084 branched-chain-amino-acid transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G013040.1ClCG02G013040.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34724FAMILY NOT NAMEDcoord: 2..48
score: 1.2
NoneNo IPR availablePANTHERPTHR34724:SF2SUBFAMILY NOT NAMEDcoord: 2..48
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G013040Csa2G287170Cucumber (Chinese Long) v2cuwcgB119
ClCG02G013040Cla020166Watermelon (97103) v1wcgwmB197
ClCG02G013040Cla97C02G038710Watermelon (97103) v2wcgwmbB138
ClCG02G013040Bhi10G001797Wax gourdwcgwgoB284
ClCG02G013040CSPI02G14570Wild cucumber (PI 183967)cpiwcgB125
ClCG02G013040Cucsa.366580Cucumber (Gy14) v1cgywcgB629
ClCG02G013040CmaCh02G005620Cucurbita maxima (Rimu)cmawcgB533
ClCG02G013040CmoCh02G005710Cucurbita moschata (Rifu)cmowcgB532
ClCG02G013040Lsi10G005920Bottle gourd (USVL1VR-Ls)lsiwcgB045
ClCG02G013040CsGy2G014540Cucumber (Gy14) v2cgybwcgB115
ClCG02G013040Carg11637Silver-seed gourdcarwcgB1029
ClCG02G013040CsaV3_2G017120Cucumber (Chinese Long) v3cucwcgB134
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G013040Cucurbita pepo (Zucchini)cpewcgB257
ClCG02G013040Cucurbita pepo (Zucchini)cpewcgB666
ClCG02G013040Cucumber (Gy14) v2cgybwcgB118
ClCG02G013040Cucumber (Gy14) v2cgybwcgB418
ClCG02G013040Melon (DHL92) v3.6.1medwcgB102
ClCG02G013040Silver-seed gourdcarwcgB0967
ClCG02G013040Wax gourdwcgwgoB296
ClCG02G013040Watermelon (Charleston Gray)wcgwcgB089
ClCG02G013040Cucumber (Gy14) v1cgywcgB136
ClCG02G013040Cucurbita maxima (Rimu)cmawcgB491
ClCG02G013040Cucurbita moschata (Rifu)cmowcgB491
ClCG02G013040Wild cucumber (PI 183967)cpiwcgB471
ClCG02G013040Wild cucumber (PI 183967)cpiwcgB476
ClCG02G013040Cucumber (Chinese Long) v2cuwcgB451
ClCG02G013040Melon (DHL92) v3.5.1mewcgB106