ClCG02G013040 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G013040
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Branched-chain amino acid aminotransferase, putative
Location	CG_Chr02 : 26810492 .. 26812263 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTATATCTATCATATGAACTCAACTTATTTGATAGTTAGTCTTTGTATATATTAATTTTTCTTTTCGAAATAGACATACAATTTGAAACTAATAAAAGTAGTTCTAAAAACTTTTTTGTTTTTAAAATTTGGCTAAGAATTTAAAAATGTTTATCTAAAAATATGAAAACAATTAAAAATTTATGAGAAAACAAACATAATTTTCGAAAATTAAAAACAAAAAACAATTATTTACGAAACATAGTTTTCCTTCTTTTTTCTTATTGATATTGAACAATGGACTTATTTACAAAACCTAGTTTTCCTTCCTTTTTCGTGAATATTGAACTATAAACTTCTTGGTTGCTAACACATCTATATATAAATTGGATTATACTCACTTTAACCTATAAATCTCAACTCCAACTTAAAAAATAATTATTACAATCACATTTCCAAATTGGAATAAAGTTGCCGAAATAAATTGATGCGAAAGTTGGAGAGTAAGAAAACTCTATATATAAATATTAGTTAATAATAAGAATAGAATTATGAGTAATAATAAAAAATTGAGTGGGGCGAAGAATGGGAATGAAAAATACACAATAAAAGCTTATTATTATGATTTATGAAGGTTGGGGCTAAGGTCAAATGTGGTAGTAACTTGGAAATTAAATGGTCTCCACATAAAAGTTAATGGTTTAGGATGAAATGTGGGTTAAAATTTTGGATGAGGATGGAGAAGGAATATTTCATAACAAAAATAGAATTTAGTAATAGGCTTATAAACAATTTTGAAACAAAGGGTAAGGATAAGCCTTGGGCACAAACATGTATGACATCAAATCACTCCTCATTTTAAAAAATACTCAAATAAATGCTTTTAAGAATTTAAACTCAATTTTAATATCATGAAAAATGCGTTTAAAAATATAAAATTAAAAATTAAATTGATTTGGAGTAATTAAAAGTGTATTTTAGAGTAATTTTAAATACAGTAAAAATGATTTTGATCATTTGAAAATCACTTCCATATATGTTAGTAAAATACATCATACAAAATAAAGTAATATTGAAAATTTTGATTAAAATCACTTTTTATAAAAAAATTAAGGACTAAAATCTCCAGGAGCAAAATTGAAAAACTTGAAATTGTATGGAAAAGTTTAGAGACAAAAATAAAATAAGCTTCGGAAACTAGAATATAAGAGTACTATCAAGTTGGCCCAAAAAAAAATTGCATATATATTCACTATAGTTGTTTTTTTTTTTTTTTTTTTTTTTTTGGTTAAATTACAAATTTGGTACCTATGATTATCGGTAACAGAAAGAGTTTACTTCCTATAATTTTAAAAGTTTTTTTCAAAAACGGACTATTTAGGAATATCTTTATTAAATCATAATGACTAAATTTGAAAAACAGAAAACTATATAAAAACTAAATTGTTATCAAACGGGGTGATTTTAAGATGAATGGTAAATCCAAATTTATGAATTTTGGTGTTTGTAATTTACTTATATATTTTGTAGGCATTGAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAGGAAGCATAG

mRNA sequence

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTAAGACAGTTGTTAAGGAAGCATAG

Coding sequence (CDS)

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTAAGACAGTTGTTAAGGAAGCATAG

Protein sequence

MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQSTNPKSFVPTGKTVVKEA

Homology

[Close]

BLAST of ClCG02G013040 vs. TrEMBL
Match: A0A0A0LJK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.3e-24
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTGKTV 74
            P S V TGKTV
Sbjct: 61 VQPSS-VSTGKTV 71

[Close]

BLAST of ClCG02G013040 vs. TrEMBL
Match: U5G8E8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]

BLAST of ClCG02G013040 vs. TrEMBL
Match: B9HEK4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]

BLAST of ClCG02G013040 vs. TrEMBL
Match: U5GAR3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]

BLAST of ClCG02G013040 vs. TrEMBL
Match: U5G557_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]

BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|700206916|gb|KGN62035.1| (hypothetical protein Csa_2G287170 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 6.2e-24
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTGKTV 74
            P S V TGKTV
Sbjct: 61 VQPSS-VSTGKTV 71

[Close]

BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|224094592|ref|XP_002310185.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]

BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|566180887|ref|XP_006380739.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]

BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|566180889|ref|XP_006380740.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]

BLAST of ClCG02G013040 vs. NCBI nr
Match: gi|566180884|ref|XP_006380738.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

The following BLAST results are available for this feature:

BLAST of ClCG02G013040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJK5_CUCSA	4.3e-24	73.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1	[more]
U5G8E8_POPTR	8.1e-15	55.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1	[more]
B9HEK4_POPTR	8.1e-15	55.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1	[more]
U5GAR3_POPTR	8.1e-15	55.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1	[more]
U5G557_POPTR	8.1e-15	55.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1	[more]

BLAST of ClCG02G013040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206916\|gb\|KGN62035.1\|	6.2e-24	73.97	hypothetical protein Csa_2G287170 [Cucumis sativus]	[more]
gi\|224094592\|ref\|XP_002310185.1\|	1.2e-14	55.38	hypothetical protein POPTR_0007s12040g [Populus trichocarpa]	[more]
gi\|566180887\|ref\|XP_006380739.1\|	1.2e-14	55.38	hypothetical protein POPTR_0007s12040g [Populus trichocarpa]	[more]
gi\|566180889\|ref\|XP_006380740.1\|	1.2e-14	55.38	hypothetical protein POPTR_0007s12040g [Populus trichocarpa]	[more]
gi\|566180884\|ref\|XP_006380738.1\|	1.2e-14	55.38	hypothetical protein POPTR_0007s12040g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0006550	isoleucine catabolic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0006552	leucine catabolic process
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0006574	valine catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004084	branched-chain-amino-acid transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G013040.1	ClCG02G013040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34724	FAMILY NOT NAMED	coord: 2..48 score: 1.2
None	No IPR available	PANTHER	PTHR34724:SF2	SUBFAMILY NOT NAMED	coord: 2..48 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G013040	Csa2G287170	Cucumber (Chinese Long) v2	cuwcgB119
ClCG02G013040	Cla020166	Watermelon (97103) v1	wcgwmB197
ClCG02G013040	Cla97C02G038710	Watermelon (97103) v2	wcgwmbB138
ClCG02G013040	Bhi10G001797	Wax gourd	wcgwgoB284
ClCG02G013040	CSPI02G14570	Wild cucumber (PI 183967)	cpiwcgB125
ClCG02G013040	Cucsa.366580	Cucumber (Gy14) v1	cgywcgB629
ClCG02G013040	CmaCh02G005620	Cucurbita maxima (Rimu)	cmawcgB533
ClCG02G013040	CmoCh02G005710	Cucurbita moschata (Rifu)	cmowcgB532
ClCG02G013040	Lsi10G005920	Bottle gourd (USVL1VR-Ls)	lsiwcgB045
ClCG02G013040	CsGy2G014540	Cucumber (Gy14) v2	cgybwcgB115
ClCG02G013040	Carg11637	Silver-seed gourd	carwcgB1029
ClCG02G013040	CsaV3_2G017120	Cucumber (Chinese Long) v3	cucwcgB134

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G013040	Wax gourd	wcgwgoB296
ClCG02G013040	Watermelon (Charleston Gray)	wcgwcgB089
ClCG02G013040	Cucumber (Gy14) v1	cgywcgB136
ClCG02G013040	Cucurbita maxima (Rimu)	cmawcgB491
ClCG02G013040	Cucurbita moschata (Rifu)	cmowcgB491
ClCG02G013040	Wild cucumber (PI 183967)	cpiwcgB471
ClCG02G013040	Wild cucumber (PI 183967)	cpiwcgB476
ClCG02G013040	Cucumber (Chinese Long) v2	cuwcgB451
ClCG02G013040	Melon (DHL92) v3.5.1	mewcgB106
ClCG02G013040	Cucurbita pepo (Zucchini)	cpewcgB257
ClCG02G013040	Cucurbita pepo (Zucchini)	cpewcgB666
ClCG02G013040	Cucumber (Gy14) v2	cgybwcgB118
ClCG02G013040	Cucumber (Gy14) v2	cgybwcgB418
ClCG02G013040	Melon (DHL92) v3.6.1	medwcgB102
ClCG02G013040	Silver-seed gourd	carwcgB0967