ClCG02G013040.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG02G013040.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionBranched-chain amino acid aminotransferase, putative
LocationCG_Chr02 : 26810492 .. 26812263 (-)
Sequence length234
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTATATCTATCATATGAACTCAACTTATTTGATAGTTAGTCTTTGTATATATTAATTTTTCTTTTCGAAATAGACATACAATTTGAAACTAATAAAAGTAGTTCTAAAAACTTTTTTGTTTTTAAAATTTGGCTAAGAATTTAAAAATGTTTATCTAAAAATATGAAAACAATTAAAAATTTATGAGAAAACAAACATAATTTTCGAAAATTAAAAACAAAAAACAATTATTTACGAAACATAGTTTTCCTTCTTTTTTCTTATTGATATTGAACAATGGACTTATTTACAAAACCTAGTTTTCCTTCCTTTTTCGTGAATATTGAACTATAAACTTCTTGGTTGCTAACACATCTATATATAAATTGGATTATACTCACTTTAACCTATAAATCTCAACTCCAACTTAAAAAATAATTATTACAATCACATTTCCAAATTGGAATAAAGTTGCCGAAATAAATTGATGCGAAAGTTGGAGAGTAAGAAAACTCTATATATAAATATTAGTTAATAATAAGAATAGAATTATGAGTAATAATAAAAAATTGAGTGGGGCGAAGAATGGGAATGAAAAATACACAATAAAAGCTTATTATTATGATTTATGAAGGTTGGGGCTAAGGTCAAATGTGGTAGTAACTTGGAAATTAAATGGTCTCCACATAAAAGTTAATGGTTTAGGATGAAATGTGGGTTAAAATTTTGGATGAGGATGGAGAAGGAATATTTCATAACAAAAATAGAATTTAGTAATAGGCTTATAAACAATTTTGAAACAAAGGGTAAGGATAAGCCTTGGGCACAAACATGTATGACATCAAATCACTCCTCATTTTAAAAAATACTCAAATAAATGCTTTTAAGAATTTAAACTCAATTTTAATATCATGAAAAATGCGTTTAAAAATATAAAATTAAAAATTAAATTGATTTGGAGTAATTAAAAGTGTATTTTAGAGTAATTTTAAATACAGTAAAAATGATTTTGATCATTTGAAAATCACTTCCATATATGTTAGTAAAATACATCATACAAAATAAAGTAATATTGAAAATTTTGATTAAAATCACTTTTTATAAAAAAATTAAGGACTAAAATCTCCAGGAGCAAAATTGAAAAACTTGAAATTGTATGGAAAAGTTTAGAGACAAAAATAAAATAAGCTTCGGAAACTAGAATATAAGAGTACTATCAAGTTGGCCCAAAAAAAAATTGCATATATATTCACTATAGTTGTTTTTTTTTTTTTTTTTTTTTTTTTGGTTAAATTACAAATTTGGTACCTATGATTATCGGTAACAGAAAGAGTTTACTTCCTATAATTTTAAAAGTTTTTTTCAAAAACGGACTATTTAGGAATATCTTTATTAAATCATAATGACTAAATTTGAAAAACAGAAAACTATATAAAAACTAAATTGTTATCAAACGGGGTGATTTTAAGATGAATGGTAAATCCAAATTTATGAATTTTGGTGTTTGTAATTTACTTATATATTTTGTAGGCATTGAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAGGAAGCATAG

mRNA sequence

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTAAGACAGTTGTTAAGGAAGCATAG

Coding sequence (CDS)

ATGTGTATTCTTGTGGTTTGCAACCAATGCAACAAATATACATGGAAGGGCTGTGGTCGCCACCTTCCTGAGCTCTACAAGGGCGTAGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCGGGCGTCGTCGTGCCACCGGAAGTTGTCGCCGACACGAAGACGCAACCGACTCAGTCAACAAACCCCAAATCATTTGTCCCTACAGGTAAGACAGTTGTTAAGGAAGCATAG

Protein sequence

MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQSTNPKSFVPTGKTVVKEA
Homology
[Close]
BLAST of ClCG02G013040.1 vs. TrEMBL
Match: A0A0A0LJK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.3e-24
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTGKTV 74
            P S V TGKTV
Sbjct: 61 VQPSS-VSTGKTV 71

[Close]
BLAST of ClCG02G013040.1 vs. TrEMBL
Match: U5G8E8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040.1 vs. TrEMBL
Match: B9HEK4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040.1 vs. TrEMBL
Match: U5GAR3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040.1 vs. TrEMBL
Match: U5G557_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040.1 vs. NCBI nr
Match: gi|700206916|gb|KGN62035.1| (hypothetical protein Csa_2G287170 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 6.2e-24
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC+LVVC  C+KYTWKGCGRHLP LYK VEKGKHC C PWPGVVVPPE V DT T+P+Q 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPDT-TKPSQP 60

Query: 61 TNPKSFVPTGKTV 74
            P S V TGKTV
Sbjct: 61 VQPSS-VSTGKTV 71

[Close]
BLAST of ClCG02G013040.1 vs. NCBI nr
Match: gi|224094592|ref|XP_002310185.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040.1 vs. NCBI nr
Match: gi|566180887|ref|XP_006380739.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040.1 vs. NCBI nr
Match: gi|566180889|ref|XP_006380740.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

[Close]
BLAST of ClCG02G013040.1 vs. NCBI nr
Match: gi|566180884|ref|XP_006380738.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 

Query: 1  MCILVVCNQCNKYTWKGCGRHLPELYKGVEKGKHCTCRPWPGVVVPPEVVADTKTQPTQS 60
          MC  V C QCNKY+W GCG HL  +Y G+EKGKHCTC+PWPGVV+  E  A  + QP ++
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA-AEQQPYRA 60

Query: 61 TNPKS 66
           +  S
Sbjct: 61 LSANS 64

The following BLAST results are available for this feature:
BLAST of ClCG02G013040.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJK5_CUCSA4.3e-2473.97Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1[more]
U5G8E8_POPTR8.1e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
B9HEK4_POPTR8.1e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
U5GAR3_POPTR8.1e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
U5G557_POPTR8.1e-1555.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1[more]
BLAST of ClCG02G013040.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206916|gb|KGN62035.1|6.2e-2473.97hypothetical protein Csa_2G287170 [Cucumis sativus][more]
gi|224094592|ref|XP_002310185.1|1.2e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
gi|566180887|ref|XP_006380739.1|1.2e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
gi|566180889|ref|XP_006380740.1|1.2e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
gi|566180884|ref|XP_006380738.1|1.2e-1455.38hypothetical protein POPTR_0007s12040g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0016301 kinase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG02G013040ClCG02G013040gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG02G013040.1ClCG02G013040.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG02G013040.1.cds2ClCG02G013040.1.cds2CDS
ClCG02G013040.1.cds1ClCG02G013040.1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34724FAMILY NOT NAMEDcoord: 2..48
score: 1.2
NoneNo IPR availablePANTHERPTHR34724:SF2SUBFAMILY NOT NAMEDcoord: 2..48
score: 1.2