CmoCh02G005710 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G005710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Branched-chain amino acid aminotransferase, putative) (2.6.1.42)
Location	Cmo_Chr02 : 3340739 .. 3341431 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCCATATCTTCACAGCCTTGCAACCCTCTGGACATCATGTGTTATCTCGTGGAGTGCAAGACGTGCAACAAGACCTCCTGGAAGGGCTGTGGCAATCACCTGCCTGATCTCTATAAGCGAATTGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCCGGCGTCGTCGTGCCCCTTGAGGATTCTGCTGACATGAAAACCGCACCGCCAACGATGGCTAACCCGAAATCATCTGTCACTGAAGGTACACCGCTACACATATCTCAACTCAACTCGTTCAATTTAGATTGTGGTAATTTATAATGACATCTTCTTCAAAGTCAAATTTGGTGACGTTGAACAAGAAAATAATAAAATATTTAATAATTTCTAAAATCAATAGAAATTTGGCGACCAAAATAAAATTATTACAAAGCATGTAATTTTAGTTTTCTTATTAAAAAAATTAGCCAATCACAAAGAAATTATTATAAACATGTTTTTGTAAATAAAAAATAACGAACAATAAAAGATAAATAAATATCGTTACGTGTTTTGTAGGTACTGAAAGTTGGGGTTCGTTTGTGCAGGTAAGACAGTTGATAAGGAAGCTTAGGGAAGCGTGGAGTGGCTAAGTTAGAGAGGTTTGAGTCATTTAAGCAATTTCATATGAATTATTGTTATATAAATAAGGACGGGTTTGTACGGGAT

mRNA sequence

CTCCCCATATCTTCACAGCCTTGCAACCCTCTGGACATCATGTGTTATCTCGTGGAGTGCAAGACGTGCAACAAGACCTCCTGGAAGGGCTGTGGCAATCACCTGCCTGATCTCTATAAGCGAATTGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCCGGCGTCGTCGTGCCCCTTGAGGATTCTGCTGACATGAAAACCGCACCGCCAACGATGGCTAACCCGAAATCATCTGTCACTGAAGGTACACCGCTACACATATCTCAACTCAACTCGTTCAATTTAGATTGTGGTACTGAAAGTTGGGGTTCGTTTGTGCAGGTAAGACAGTTGATAAGGAAGCTTAGGGAAGCGTGGAGTGGCTAAGTTAGAGAGGTTTGAGTCATTTAAGCAATTTCATATGAATTATTGTTATATAAATAAGGACGGGTTTGTACGGGAT

Coding sequence (CDS)

CTCCCCATATCTTCACAGCCTTGCAACCCTCTGGACATCATGTGTTATCTCGTGGAGTGCAAGACGTGCAACAAGACCTCCTGGAAGGGCTGTGGCAATCACCTGCCTGATCTCTATAAGCGAATTGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCCGGCGTCGTCGTGCCCCTTGAGGATTCTGCTGACATGAAAACCGCACCGCCAACGATGGCTAACCCGAAATCATCTGTCACTGAAGGTACACCGCTACACATATCTCAACTCAACTCGTTCAATTTAGATTGTGGTACTGAAAGTTGGGGTTCGTTTGTGCAGGTAAGACAGTTGATAAGGAAGCTTAGGGAAGCGTGGAGTGGCTAA

Homology

[Close]

BLAST of CmoCh02G005710 vs. TrEMBL
Match: A0A0A0LJK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-17
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
          MC LV CK C+K +WKGCG HLP LYK +EKGKHC C PWPGVVVP ED  D  T  P+ 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPD--TTKPSQ 60

Query: 74 ANPKSSVTEG 84
              SSV+ G
Sbjct: 61 PVQPSSVSTG 68

[Close]

BLAST of CmoCh02G005710 vs. TrEMBL
Match: A0A0L9UR73_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g038300 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.8e-16
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 14  MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
           MCY VEC++C + +W GCGNHL  LY  I++G HCTCR WPGVV+P   S D  T  PT 
Sbjct: 1   MCYRVECRSCGRYTWGGCGNHLTTLYASIDEGMHCTCRSWPGVVIP-PRSTDTATQQPTQ 60

Query: 74  ANPKSSVTEGTP--LHISQLNSFNLDCGTES 103
            N  S   +G P  L ++QL  F L   T S
Sbjct: 61  PNNSS---QGKPFQLPLNQLRYFKLYVNTNS 87

[Close]

BLAST of CmoCh02G005710 vs. TrEMBL
Match: U5GFL5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s13900g PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
          MCY VECK C K SW+GCG HL  LY  I+KGKHC C+ WPGVVVP E++A  +T P  +
Sbjct: 1  MCYRVECKQCKKYSWRGCGEHLATLYASIDKGKHCLCKSWPGVVVPAEETATEQT-PSGV 60

Query: 74 ANPKSSVTEG 84
           +  ++ T G
Sbjct: 61 VSTSATTTAG 69

[Close]

BLAST of CmoCh02G005710 vs. TrEMBL
Match: B9HEK4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-15
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSA 65
          MCY V CK CNK SW GCGNHL  +Y  IEKGKHCTC+PWPGVV+  E++A
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA 51

[Close]

BLAST of CmoCh02G005710 vs. TrEMBL
Match: U5G8E8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-15
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSA 65
          MCY V CK CNK SW GCGNHL  +Y  IEKGKHCTC+PWPGVV+  E++A
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA 51

[Close]

BLAST of CmoCh02G005710 vs. NCBI nr
Match: gi|700206916|gb|KGN62035.1| (hypothetical protein Csa_2G287170 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
          MC LV CK C+K +WKGCG HLP LYK +EKGKHC C PWPGVVVP ED  D  T  P+ 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPD--TTKPSQ 60

Query: 74 ANPKSSVTEG 84
              SSV+ G
Sbjct: 61 PVQPSSVSTG 68

[Close]

BLAST of CmoCh02G005710 vs. NCBI nr
Match: gi|920701852|gb|KOM45077.1| (hypothetical protein LR48_Vigan06g038300 [Vigna angularis])

HSP 1 Score: 91.7 bits (226), Expect = 9.8e-16
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1


Query: 14  MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
           MCY VEC++C + +W GCGNHL  LY  I++G HCTCR WPGVV+P   S D  T  PT 
Sbjct: 1   MCYRVECRSCGRYTWGGCGNHLTTLYASIDEGMHCTCRSWPGVVIP-PRSTDTATQQPTQ 60

Query: 74  ANPKSSVTEGTP--LHISQLNSFNLDCGTES 103
            N  S   +G P  L ++QL  F L   T S
Sbjct: 61  PNNSS---QGKPFQLPLNQLRYFKLYVNTNS 87

[Close]

BLAST of CmoCh02G005710 vs. NCBI nr
Match: gi|566171228|ref|XP_006383289.1| (hypothetical protein POPTR_0005s13900g [Populus trichocarpa])

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-15
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
          MCY VECK C K SW+GCG HL  LY  I+KGKHC C+ WPGVVVP E++A  +T P  +
Sbjct: 1  MCYRVECKQCKKYSWRGCGEHLATLYASIDKGKHCLCKSWPGVVVPAEETATEQT-PSGV 60

Query: 74 ANPKSSVTEG 84
           +  ++ T G
Sbjct: 61 VSTSATTTAG 69

[Close]

BLAST of CmoCh02G005710 vs. NCBI nr
Match: gi|224094592|ref|XP_002310185.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-15
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSA 65
          MCY V CK CNK SW GCGNHL  +Y  IEKGKHCTC+PWPGVV+  E++A
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA 51

[Close]

BLAST of CmoCh02G005710 vs. NCBI nr
Match: gi|566180889|ref|XP_006380740.1| (hypothetical protein POPTR_0007s12040g [Populus trichocarpa])

HSP 1 Score: 89.4 bits (220), Expect = 4.9e-15
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSA 65
          MCY V CK CNK SW GCGNHL  +Y  IEKGKHCTC+PWPGVV+  E++A
Sbjct: 1  MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA 51

The following BLAST results are available for this feature:

BLAST of CmoCh02G005710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G005710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJK5_CUCSA	2.1e-17	61.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287170 PE=4 SV=1	[more]
A0A0L9UR73_PHAAN	6.8e-16	49.45	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g038300 PE=4 SV=1	[more]
U5GFL5_POPTR	2.6e-15	54.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s13900g PE=4 SV=1	[more]
B9HEK4_POPTR	3.4e-15	68.63	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1	[more]
U5G8E8_POPTR	3.4e-15	68.63	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12040g PE=4 SV=1	[more]

BLAST of CmoCh02G005710 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh02G005710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206916\|gb\|KGN62035.1\|	3.0e-17	61.43	hypothetical protein Csa_2G287170 [Cucumis sativus]	[more]
gi\|920701852\|gb\|KOM45077.1\|	9.8e-16	49.45	hypothetical protein LR48_Vigan06g038300 [Vigna angularis]	[more]
gi\|566171228\|ref\|XP_006383289.1\|	3.7e-15	54.29	hypothetical protein POPTR_0005s13900g [Populus trichocarpa]	[more]
gi\|224094592\|ref\|XP_002310185.1\|	4.9e-15	68.63	hypothetical protein POPTR_0007s12040g [Populus trichocarpa]	[more]
gi\|566180889\|ref\|XP_006380740.1\|	4.9e-15	68.63	hypothetical protein POPTR_0007s12040g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0006550	isoleucine catabolic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0006552	leucine catabolic process
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0006574	valine catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004084	branched-chain-amino-acid transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G005710.1	CmoCh02G005710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34724	FAMILY NOT NAMED	coord: 15..79 score: 4.7
None	No IPR available	PANTHER	PTHR34724:SF2	SUBFAMILY NOT NAMED	coord: 15..79 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G005710	Cucsa.366580	Cucumber (Gy14) v1	cgycmoB1020
CmoCh02G005710	CmaCh02G005620	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G005710	Cla020166	Watermelon (97103) v1	cmowmB581
CmoCh02G005710	Csa2G287170	Cucumber (Chinese Long) v2	cmocuB571
CmoCh02G005710	ClCG02G013040	Watermelon (Charleston Gray)	cmowcgB532
CmoCh02G005710	CSPI02G14570	Wild cucumber (PI 183967)	cmocpiB576
CmoCh02G005710	Lsi10G005920	Bottle gourd (USVL1VR-Ls)	cmolsiB530
CmoCh02G005710	CsaV3_2G017120	Cucumber (Chinese Long) v3	cmocucB0682
CmoCh02G005710	Cla97C02G038710	Watermelon (97103) v2	cmowmbB594
CmoCh02G005710	Bhi10G001797	Wax gourd	cmowgoB0741
CmoCh02G005710	CsGy2G014540	Cucumber (Gy14) v2	cgybcmoB217
CmoCh02G005710	Carg11637	Silver-seed gourd	carcmoB1422

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G005710	Cucumber (Chinese Long) v2	cmocuB581
CmoCh02G005710	Melon (DHL92) v3.5.1	cmomeB544
CmoCh02G005710	Melon (DHL92) v3.5.1	cmomeB547
CmoCh02G005710	Watermelon (Charleston Gray)	cmowcgB547
CmoCh02G005710	Watermelon (97103) v1	cmowmB596
CmoCh02G005710	Cucurbita pepo (Zucchini)	cmocpeB548
CmoCh02G005710	Cucurbita pepo (Zucchini)	cmocpeB573
CmoCh02G005710	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G005710	Bottle gourd (USVL1VR-Ls)	cmolsiB538
CmoCh02G005710	Cucumber (Gy14) v2	cgybcmoB225
CmoCh02G005710	Melon (DHL92) v3.6.1	cmomedB611
CmoCh02G005710	Melon (DHL92) v3.6.1	cmomedB622
CmoCh02G005710	Melon (DHL92) v3.6.1	cmomedB625
CmoCh02G005710	Cucumber (Chinese Long) v3	cmocucB0685
CmoCh02G005710	Cucumber (Chinese Long) v3	cmocucB0692
CmoCh02G005710	Watermelon (97103) v2	cmowmbB610
CmoCh02G005710	Wax gourd	cmowgoB0753
CmoCh02G005710	Cucurbita moschata (Rifu)	cmocmoB415
CmoCh02G005710	Cucumber (Gy14) v1	cgycmoB1018
CmoCh02G005710	Cucurbita maxima (Rimu)	cmacmoB565
CmoCh02G005710	Wild cucumber (PI 183967)	cmocpiB586