Csa2G008650 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G008650
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR018860 (Anaphase-promoting complex, subunit CDC26)
LocationChr2 : 1463733 .. 1463939 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAGAAGACAACCCAGCAAGATCGAGGTAAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCCGCCGCCTCAACCACCACCACTACCACCACCGACGCTACCTCTGCCGCTGGCTCCCTCCTTCATAACATCAACCGCAACAAAGATCAAGCCTCCAAAGCCCAGCGGCTTGGTATCTCCTCTTGA

mRNA sequence

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTAAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCCGCCGCCTCAACCACCACCACTACCACCACCGACGCTACCTCTGCCGCTGGCTCCCTCCTTCATAACATCAACCGCAACAAAGATCAAGCCTCCAAAGCCCAGCGGCTTGGTATCTCCTCTTGA

Coding sequence (CDS)

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTAAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCCGCCGCCTCAACCACCACCACTACCACCACCGACGCTACCTCTGCCGCTGGCTCCCTCCTTCATAACATCAACCGCAACAAAGATCAAGCCTCCAAAGCCCAGCGGCTTGGTATCTCCTCTTGA

Protein sequence

MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASKAQRLGISS*
Homology
[Close]
BLAST of Csa2G008650 vs. TrEMBL
Match: A0A0A0LFB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008650 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60
          MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60

Query: 61 AQRLGISS 69
          AQRLGISS
Sbjct: 61 AQRLGISS 68

[Close]
BLAST of Csa2G008650 vs. TrEMBL
Match: W9RE38_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023685 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-12
Identity = 41/67 (61.19%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTT-TTDATSAAGSLLHNINRNKDQAS 60
          MLRR+P+KIEV+IEDK+ELE+ARKRAAAAA+T T+T ++ A + A SLL  ++R KD +S
Sbjct: 1  MLRRKPTKIEVRIEDKDELEEARKRAAAAAATATSTISSAANTGATSLLQQLDRAKDTSS 60

Query: 61 KAQRLGI 67
          KA R+G+
Sbjct: 61 KAHRIGL 67

[Close]
BLAST of Csa2G008650 vs. TrEMBL
Match: A0A0A0LI59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008400 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.5e-12
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60
          MLRRQP+ I+V+IEDKEELEQ RKR AAA            S   SLLHN++RNKD ASK
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAA------------STYSSLLHNLSRNKDPASK 56

Query: 61 AQRLGISS 69
          AQRLGISS
Sbjct: 61 AQRLGISS 56

[Close]
BLAST of Csa2G008650 vs. TrEMBL
Match: A0A164WG11_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_020899 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-11
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINR-NKDQAS 60
          ML R+PSKI+VK+EDKEE+E+ARKRAAAAA+TTTT        A SLLH+ +R +KD +S
Sbjct: 1  MLSRKPSKIQVKLEDKEEIEEARKRAAAAAATTTT-------GASSLLHHFDRSSKDPSS 60

Query: 61 KAQRLGISS 69
          K  R+G+SS
Sbjct: 61 KNSRIGLSS 62

[Close]
BLAST of Csa2G008650 vs. TrEMBL
Match: A0A151SRG3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_003599 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-09
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60
          MLRR+P+KI+VKIEDKEELE+AR+R AAA     T T +A     +LL  ++R +D +SK
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRHAAA-----TATPNAAPGTAALLRQLDRVEDPSSK 60

Query: 61 AQRLGISS 69
          A R+G+SS
Sbjct: 61 AHRIGLSS 63

[Close]
BLAST of Csa2G008650 vs. NCBI nr
Match: gi|700205606|gb|KGN60725.1| (hypothetical protein Csa_2G008650 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60
          MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60

Query: 61 AQRLGISS 69
          AQRLGISS
Sbjct: 61 AQRLGISS 68

[Close]
BLAST of Csa2G008650 vs. NCBI nr
Match: gi|703115350|ref|XP_010100873.1| (hypothetical protein L484_023685 [Morus notabilis])

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-12
Identity = 41/67 (61.19%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTT-TTDATSAAGSLLHNINRNKDQAS 60
          MLRR+P+KIEV+IEDK+ELE+ARKRAAAAA+T T+T ++ A + A SLL  ++R KD +S
Sbjct: 1  MLRRKPTKIEVRIEDKDELEEARKRAAAAAATATSTISSAANTGATSLLQQLDRAKDTSS 60

Query: 61 KAQRLGI 67
          KA R+G+
Sbjct: 61 KAHRIGL 67

[Close]
BLAST of Csa2G008650 vs. NCBI nr
Match: gi|700205605|gb|KGN60724.1| (hypothetical protein Csa_2G008400 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60
          MLRRQP+ I+V+IEDKEELEQ RKR AAA            S   SLLHN++RNKD ASK
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAA------------STYSSLLHNLSRNKDPASK 56

Query: 61 AQRLGISS 69
          AQRLGISS
Sbjct: 61 AQRLGISS 56

[Close]
BLAST of Csa2G008650 vs. NCBI nr
Match: gi|1021033952|gb|KZM91736.1| (hypothetical protein DCAR_020899 [Daucus carota subsp. sativus])

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-11
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINR-NKDQAS 60
          ML R+PSKI+VK+EDKEE+E+ARKRAAAAA+TTTT        A SLLH+ +R +KD +S
Sbjct: 1  MLSRKPSKIQVKLEDKEEIEEARKRAAAAAATTTT-------GASSLLHHFDRSSKDPSS 60

Query: 61 KAQRLGISS 69
          K  R+G+SS
Sbjct: 61 KNSRIGLSS 62

[Close]
BLAST of Csa2G008650 vs. NCBI nr
Match: gi|1012346147|gb|KYP57339.1| (hypothetical protein KK1_003599 [Cajanus cajan])

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-09
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60
          MLRR+P+KI+VKIEDKEELE+AR+R AAA     T T +A     +LL  ++R +D +SK
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRHAAA-----TATPNAAPGTAALLRQLDRVEDPSSK 60

Query: 61 AQRLGISS 69
          A R+G+SS
Sbjct: 61 AHRIGLSS 63

The following BLAST results are available for this feature:
BLAST of Csa2G008650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFB1_CUCSA1.3e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008650 PE=4 SV=1[more]
W9RE38_9ROSA2.0e-1261.19Uncharacterized protein OS=Morus notabilis GN=L484_023685 PE=4 SV=1[more]
A0A0A0LI59_CUCSA7.5e-1264.71Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008400 PE=4 SV=1[more]
A0A164WG11_DAUCA2.2e-1160.87Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_020899 PE=4 SV=1[more]
A0A151SRG3_CAJCA1.6e-0954.41Uncharacterized protein OS=Cajanus cajan GN=KK1_003599 PE=4 SV=1[more]
BLAST of Csa2G008650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205606|gb|KGN60725.1|1.8e-27100.00hypothetical protein Csa_2G008650 [Cucumis sativus][more]
gi|703115350|ref|XP_010100873.1|2.8e-1261.19hypothetical protein L484_023685 [Morus notabilis][more]
gi|700205605|gb|KGN60724.1|1.1e-1164.71hypothetical protein Csa_2G008400 [Cucumis sativus][more]
gi|1021033952|gb|KZM91736.1|3.1e-1160.87hypothetical protein DCAR_020899 [Daucus carota subsp. sativus][more]
gi|1012346147|gb|KYP57339.1|2.3e-0954.41hypothetical protein KK1_003599 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030071 regulation of mitotic metaphase/anaphase transition
biological_process GO:0008150 biological_process
cellular_component GO:0005680 anaphase-promoting complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU097058cucumber EST collection version 3.0transcribed_cluster
CU174334cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G008650.1Csa2G008650.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU097058CU097058transcribed_cluster
CU174334CU174334transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 9..29
scor