Lsi11G003590 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G003590
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr11 : 3753549 .. 3753731 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTCAAAATCGAAGACAAGGAAGAACTCGAACAGGCTCGCAAACGCGCCGCCGCCACCACTGACGCGACCTCTGCCGCCGCCTCCCTCCTTCAGAACATCAACCGCAACAAAGATCAGACCTCCAAATCCCAGCGGCTTGGTATCTCCTCTTGA

mRNA sequence

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTCAAAATCGAAGACAAGGAAGAACTCGAACAGGCTCGCAAACGCGCCGCCGCCACCACTGACGCGACCTCTGCCGCCGCCTCCCTCCTTCAGAACATCAACCGCAACAAAGATCAGACCTCCAAATCCCAGCGGCTTGGTATCTCCTCTTGA

Coding sequence (CDS)

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTCAAAATCGAAGACAAGGAAGAACTCGAACAGGCTCGCAAACGCGCCGCCGCCACCACTGACGCGACCTCTGCCGCCGCCTCCCTCCTTCAGAACATCAACCGCAACAAAGATCAGACCTCCAAATCCCAGCGGCTTGGTATCTCCTCTTGA

Protein sequence

MLRRQPSKIEVKIEDKEELEQARKRAAATTDATSAAASLLQNINRNKDQTSKSQRLGISS

Homology

[Close]

BLAST of Lsi11G003590 vs. TrEMBL
Match: A0A0A0LFB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008650 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-16
Identity = 56/68 (82.35%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAA--------TTDATSAAASLLQNINRNKDQTSK 60
          MLRRQPSKIEVKIEDKEELEQARKRAAA        TTDATSAA SLL NINRNKDQ SK
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60

[Close]

BLAST of Lsi11G003590 vs. TrEMBL
Match: A0A0A0LI59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008400 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-08
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAATTDATSAAASLLQNINRNKDQTSKSQRLGISS 60
          MLRRQP+ I+V+IEDKEELEQ RKR A    A S  +SLL N++RNKD  SK+QRLGISS
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPA----AASTYSSLLHNLSRNKDPASKAQRLGISS 56

[Close]

BLAST of Lsi11G003590 vs. TrEMBL
Match: A0A151SRG3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_003599 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.3e-07
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAATTDATSAA---ASLLQNINRNKDQTSKSQRLG 60
          MLRR+P+KI+VKIEDKEELE+AR+R AA T   +AA   A+LL+ ++R +D +SK+ R+G
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRHAAATATPNAAPGTAALLRQLDRVEDPSSKAHRIG 60

[Close]

BLAST of Lsi11G003590 vs. TrEMBL
Match: W9RE38_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023685 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-06
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAA---------TTDATSAAASLLQNINRNKDQTS 59
          MLRR+P+KIEV+IEDK+ELE+ARKRAAA         ++ A + A SLLQ ++R KD +S
Sbjct: 1  MLRRKPTKIEVRIEDKDELEEARKRAAAAAATATSTISSAANTGATSLLQQLDRAKDTSS 60

[Close]

BLAST of Lsi11G003590 vs. TrEMBL
Match: A0A164WG11_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_020899 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-06
Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKR-AAATTDATSAAASLLQNINR-NKDQTSKSQRLGI 60
          ML R+PSKI+VK+EDKEE+E+ARKR AAA    T+ A+SLL + +R +KD +SK+ R+G+
Sbjct: 1  MLSRKPSKIQVKLEDKEEIEEARKRAAAAAATTTTGASSLLHHFDRSSKDPSSKNSRIGL 60

[Close]

BLAST of Lsi11G003590 vs. NCBI nr
Match: gi|700205606|gb|KGN60725.1| (hypothetical protein Csa_2G008650 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-16
Identity = 56/68 (82.35%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAA--------TTDATSAAASLLQNINRNKDQTSK 60
          MLRRQPSKIEVKIEDKEELEQARKRAAA        TTDATSAA SLL NINRNKDQ SK
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60

[Close]

BLAST of Lsi11G003590 vs. NCBI nr
Match: gi|700205605|gb|KGN60724.1| (hypothetical protein Csa_2G008400 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-08
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAATTDATSAAASLLQNINRNKDQTSKSQRLGISS 60
          MLRRQP+ I+V+IEDKEELEQ RKR A    A S  +SLL N++RNKD  SK+QRLGISS
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPA----AASTYSSLLHNLSRNKDPASKAQRLGISS 56

[Close]

BLAST of Lsi11G003590 vs. NCBI nr
Match: gi|1012346147|gb|KYP57339.1| (hypothetical protein KK1_003599 [Cajanus cajan])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAATTDATSAA---ASLLQNINRNKDQTSKSQRLG 60
          MLRR+P+KI+VKIEDKEELE+AR+R AA T   +AA   A+LL+ ++R +D +SK+ R+G
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRHAAATATPNAAPGTAALLRQLDRVEDPSSKAHRIG 60

[Close]

BLAST of Lsi11G003590 vs. NCBI nr
Match: gi|703115350|ref|XP_010100873.1| (hypothetical protein L484_023685 [Morus notabilis])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAA---------TTDATSAAASLLQNINRNKDQTS 59
          MLRR+P+KIEV+IEDK+ELE+ARKRAAA         ++ A + A SLLQ ++R KD +S
Sbjct: 1  MLRRKPTKIEVRIEDKDELEEARKRAAAAAATATSTISSAANTGATSLLQQLDRAKDTSS 60

[Close]

BLAST of Lsi11G003590 vs. NCBI nr
Match: gi|1021033952|gb|KZM91736.1| (hypothetical protein DCAR_020899 [Daucus carota subsp. sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-06
Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = 1


Query: 1  MLRRQPSKIEVKIEDKEELEQARKR-AAATTDATSAAASLLQNINR-NKDQTSKSQRLGI 60
          ML R+PSKI+VK+EDKEE+E+ARKR AAA    T+ A+SLL + +R +KD +SK+ R+G+
Sbjct: 1  MLSRKPSKIQVKLEDKEEIEEARKRAAAAAATTTTGASSLLHHFDRSSKDPSSKNSRIGL 60

The following BLAST results are available for this feature:

BLAST of Lsi11G003590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G003590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFB1_CUCSA	3.4e-16	82.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008650 PE=4 SV=1	[more]
A0A0A0LI59_CUCSA	2.0e-08	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008400 PE=4 SV=1	[more]
A0A151SRG3_CAJCA	8.3e-07	57.14	Uncharacterized protein OS=Cajanus cajan GN=KK1_003599 PE=4 SV=1	[more]
W9RE38_9ROSA	1.1e-06	53.73	Uncharacterized protein OS=Morus notabilis GN=L484_023685 PE=4 SV=1	[more]
A0A164WG11_DAUCA	2.4e-06	58.06	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_020899 PE=4 SV=1	[more]

BLAST of Lsi11G003590 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi11G003590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205606\|gb\|KGN60725.1\|	4.8e-16	82.35	hypothetical protein Csa_2G008650 [Cucumis sativus]	[more]
gi\|700205605\|gb\|KGN60724.1\|	2.8e-08	66.67	hypothetical protein Csa_2G008400 [Cucumis sativus]	[more]
gi\|1012346147\|gb\|KYP57339.1\|	1.2e-06	57.14	hypothetical protein KK1_003599 [Cajanus cajan]	[more]
gi\|703115350\|ref\|XP_010100873.1\|	1.6e-06	53.73	hypothetical protein L484_023685 [Morus notabilis]	[more]
gi\|1021033952\|gb\|KZM91736.1\|	3.5e-06	58.06	hypothetical protein DCAR_020899 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0030071	regulation of mitotic metaphase/anaphase transition
cellular_component	GO:0005680	anaphase-promoting complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G003590.1	Lsi11G003590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 9..29 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G003590	Csa2G008650	Cucumber (Chinese Long) v2	culsiB098
Lsi11G003590	Cla016667	Watermelon (97103) v1	lsiwmB116
Lsi11G003590	MELO3C004480	Melon (DHL92) v3.5.1	lsimeB112
Lsi11G003590	ClCG11G003480	Watermelon (Charleston Gray)	lsiwcgB078
Lsi11G003590	Cla97C11G209980	Watermelon (97103) v2	lsiwmbB074

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G003590	Watermelon (97103) v2	lsiwmbB103
Lsi11G003590	Wax gourd	lsiwgoB108
Lsi11G003590	Bottle gourd (USVL1VR-Ls)	lsilsiB057
Lsi11G003590	Cucumber (Gy14) v1	cgylsiB205
Lsi11G003590	Cucurbita maxima (Rimu)	cmalsiB012
Lsi11G003590	Cucurbita maxima (Rimu)	cmalsiB159
Lsi11G003590	Cucurbita maxima (Rimu)	cmalsiB715
Lsi11G003590	Cucurbita moschata (Rifu)	cmolsiB000
Lsi11G003590	Cucurbita moschata (Rifu)	cmolsiB088
Lsi11G003590	Cucurbita moschata (Rifu)	cmolsiB148
Lsi11G003590	Cucurbita moschata (Rifu)	cmolsiB706
Lsi11G003590	Cucurbita pepo (Zucchini)	cpelsiB074
Lsi11G003590	Cucurbita pepo (Zucchini)	cpelsiB527
Lsi11G003590	Cucurbita pepo (Zucchini)	cpelsiB655
Lsi11G003590	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G003590	Watermelon (Charleston Gray)	lsiwcgB106
Lsi11G003590	Watermelon (97103) v1	lsiwmB098
Lsi11G003590	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G003590	Melon (DHL92) v3.6.1	lsimedB120
Lsi11G003590	Silver-seed gourd	carlsiB226
Lsi11G003590	Silver-seed gourd	carlsiB514
Lsi11G003590	Silver-seed gourd	carlsiB573
Lsi11G003590	Cucumber (Chinese Long) v3	cuclsiB108