CsGy2G002220 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G002220
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 1477083 .. 1479564 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGAAGACAACCCACCATGATCGACGTCGAAATCGAGGATAAGGAAGAACTCGAACAACTCCGTAAACGCCCCGCCGCCGCCTCCACCTACTCCTCTCTCCTCCATAACCTCAGTCGGAATAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTATTTCCTCTTGAACTTATCCATTTCATATACTTCTCTGATCTCCGATTAGTTGGCCTAGTGAACGGGAACGATAGGGGATTAGTCCGATTCTGATCGTCCGCGTTTGCGGAAAATTCTAGGAAGGCTACAGCAAATTCTGCTTCGATCAGTGAAGCTGCCTTTCTAAAGAGTAAGTGAGCTTTTTGTTAGTATTGTAGGAAGCAATAAGCATACCCTCTTATCATGTTTGAAATCTCTTTGATTATTTCTGATGGACATTAGAATTTTTGTAGAATATACTTGATGAGCTGAAAGGATTTAGTTTTGATATCATCAGATTGTTCTGTACTTTTCATGTAATGACATTAGATAGAAACATAATCATAATTTTCAGGGAGAAGGAAAACTCAAGCAATTATGTCTTACTAACAAAAACTTCTTGTTGGAGGATGAATGAATAATCAAATACCGAACAAAACCCAGATCAAAAAATGTTTAAAGAAATAGCCAAGAAACTAGTTCTTAAGATATTATTCACGTGATACATTTTGGTTATTGGTCATTTCTCATATGATAAAATGGCTACTGACGTTTTGTTCATCAAGTTTCTGAAACTCCTTTTGTGCTGCTTCTTACATGACTACAAGTGTATTTACTATTATTGATAGACTGATTGAAGCCTTTCTGTCTTGGTCTGTGTATGAACTGAGTTGTACTCGAAATTGAGTAAAGCATCACCACTATGTCGAGGGAGTTTTCATTAATACTAATCAAAGACGAAAATCTAAAGTTTGAATTTTCATGGAGATGATAGACACTTATCTATCATGAAGATCAGTAGTCTTCCTTAAAACCGCTACTTATTCTTAAACAAAGAGTGTACGCTTGCCAAGACTGTTTCTGGTTGAGACGTGTTAATGAAATTCATCCCGTGAAACAATGTCCCATTATCACATTAATTTGACAGTGGATCTTTTGGATTCCATTGATGACCTGTAGTTATTTCATTCAACCTTTTTCTTTAAATCGCCTAGAGTCTGTTTCTCATGGGACCAATCCACCCTAATTAAGTTGTGATGTCACAATCACATAATACTTTACTTGGTTCTCAACTTGGCTAAGTTGGGAAATTTTGCAAATCCAAAGTAAGTCACATGGGGAGTCTGTTCATTTCATCCTATCTTAGCAAAAGTGGTTTAAGGTTGGATCACTTCTTATCAAGGTGATTTTTGGAAAATTCAAGCGGAGGCAATTAAAGCATCTTTGGTTTGATGTCTAAAGATAATACCTTTGGAGTAATAACGGAGTGGAATTGTTTATAGGTATCATCTGAAAACGATATCATTGTAGTCTTTCATTAGGGAAATGCTTAGAGTGAGTTTGACCTTCGATTTCATGAGTTGGTGTTATATAACTCAACTTCGATAGTGTTCAGTATTGCAGTTTACACATTCATCAAACAACTTCATCTTTCCCTATTTCTCTCTTTTGAACATTTATAAAGAAACTTCAACTTACAACTCTACACCTCAAACATAAACATTTGAACTCTAACATGTTAACTCCAAGTTTCAAAATTTAACTTAACACCCCTTATATTTTTAGTTAAATTTATAAAATAATAACTAGTTTTTAACCTTCCAAAATTTACCTTGGATTTTTAGAACTAAATGGGTGAAAGACAAACTCGAGTCGTGTCACTTCAAACATTCAGGACAGGACTCCTTTTTGTGCATTGCTCATTTGCCTTTAGATATTGACATATTGTCCTAAGGTTCTTGGCACTTGCGATTGGTTCTTGACTTTGTGTAACAAAATTTATGATACTTTTGCCTCCATTTTTGTGGGACATCCCTTTCACAAGGTGTGAAGAAGATTCTGTGGCTCACTCTGGTTTTCTTCATATTTCTATGGGCGAGAGGAATGGAAAAAGTTTCGGAGACTCTTTCTCTACTCATAATTCACGTGCAGGTGTTTATTTCATTTATCACTGAAATGTTGTTGTATGATTTAGGAAAAGTTTGTAAGCCAATAAGATAAACTACGAATGTGTATGCCAAAGAAATCAGTAGGATCAAGAAGCATGATTTGTAATTGAAATAAAACGTTGTTGTTATATGACTAAGATCTTGAGCAAAATACATTGAGGATTGGATTTAGTATCTCTTTGGTCCCTAAGGTTGGCCACTTTTAGTACTCGAGCTAAAATTAATTCAATAAATAGCTGTTAAACTATTACTTGACCTATAAAAAATGATGTGACGGTTAGGTTTCTTATTGATTGTGTATTGTTGAGTTAGAACGCTACTAATATTTCTTATAGCAAGGTGACTTCTATTTTTC

mRNA sequence

ATGCTGAGAAGACAACCCACCATGATCGACGTCGAAATCGAGGATAAGGAAGAACTCGAACAACTCCGTAAACGCCCCGCCGCCGCCTCCACCTACTCCTCTCTCCTCCATAACCTCAGTCGGAATAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTGTGAAGAAGATTCTGTGGCTCACTCTGGTTTTCTTCATATTTCTATGGGCGAGAGGAATGGAAAAAGTTTCGGAGACTCTTTCTCTACTCATAATTCACGTGCAGGTGTTTATTTCATTTATCACTGAAATGTTGTTGTATGATTTAGGAAAAGTTTGTAAGCCAATAAGATAAACTACGAATGTGTATGCCAAAGAAATCAGTAGGATCAAGAAGCATGATTTGTAATTGAAATAAAACGTTGTTGTTATATGACTAAGATCTTGAGCAAAATACATTGAGGATTGGATTTAGTATCTCTTTGGTCCCTAAGGTTGGCCACTTTTAGTACTCGAGCTAAAATTAATTCAATAAATAGCTGTTAAACTATTACTTGACCTATAAAAAATGATGTGACGGTTAGGTTTCTTATTGATTGTGTATTGTTGAGTTAGAACGCTACTAATATTTCTTATAGCAAGGTGACTTCTATTTTTC

Coding sequence (CDS)

ATGCTGAGAAGACAACCCACCATGATCGACGTCGAAATCGAGGATAAGGAAGAACTCGAACAACTCCGTAAACGCCCCGCCGCCGCCTCCACCTACTCCTCTCTCCTCCATAACCTCAGTCGGAATAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTGTGAAGAAGATTCTGTGGCTCACTCTGGTTTTCTTCATATTTCTATGGGCGAGAGGAATGGAAAAAGTTTCGGAGACTCTTTCTCTACTCATAATTCACGTGCAGGTGTTTATTTCATTTATCACTGAAATGTTGTTGTATGATTTAGGAAAAGTTTGTAAGCCAATAAGATAA

Protein sequence

MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGVKKILWLTLVFFIFLWARGMEKVSETLSLLIIHVQVFISFITEMLLYDLGKVCKPIR

Homology

[Close]

BLAST of CsGy2G002220 vs. NCBI nr
Match: KGN60724.1 (hypothetical protein Csa_2G008400 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 2.6e-19
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGV 55
          MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLG+
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGI 54

[Close]

BLAST of CsGy2G002220 vs. NCBI nr
Match: KYP57339.1 (hypothetical protein KK1_003599 [Cajanus cajan])

HSP 1 Score: 56.6 bits (135), Expect = 6.1e-05
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAAST-------YSSLLHNLSRNKDPASKAQRLG 55
          MLRR+PT I V+IEDKEELE+ R+R AAA+         ++LL  L R +DP+SKA R+G
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRHAAATATPNAAPGTAALLRQLDRVEDPSSKAHRIG 60

[Close]

BLAST of CsGy2G002220 vs. TrEMBL
Match: tr|A0A0A0LI59|A0A0A0LI59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGV 55
          MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLG+
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGI 54

[Close]

BLAST of CsGy2G002220 vs. TrEMBL
Match: tr|A0A151SRG3|A0A151SRG3_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_003599 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-05
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAAST-------YSSLLHNLSRNKDPASKAQRLG 55
          MLRR+PT I V+IEDKEELE+ R+R AAA+         ++LL  L R +DP+SKA R+G
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRHAAATATPNAAPGTAALLRQLDRVEDPSSKAHRIG 60

[Close]

BLAST of CsGy2G002220 vs. TrEMBL
Match: tr|A0A2P5D5G0|A0A2P5D5G0_PARAD (Anaphase-promoting complex, subunit CDC OS=Parasponia andersonii OX=3476 GN=PanWU01x14_095140 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.0e-03
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 2   LRRQPTMIDVEIEDKEELEQLRKRPA---AASTYSSLLHNLSR-NKDPASKAQRLGV 55
           LRR+PT I+V+IEDK+ELE  RKR A    A+  SSLL  L R  KD +SKA R+G+
Sbjct: 63  LRRKPTKIEVKIEDKDELEASRKRAAEGTTATATSSLLQQLDRATKDASSKAHRIGL 119

The following BLAST results are available for this feature:

BLAST of CsGy2G002220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60724.1	2.6e-19	98.15	hypothetical protein Csa_2G008400 [Cucumis sativus]	[more]
KYP57339.1	6.1e-05	52.46	hypothetical protein KK1_003599 [Cajanus cajan]	[more]

BLAST of CsGy2G002220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G002220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G002220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LI59\|A0A0A0LI59_CUCSA	1.7e-19	98.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1	[more]
tr\|A0A151SRG3\|A0A151SRG3_CAJCA	4.1e-05	52.46	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_003599 PE=4 SV=1	[more]
tr\|A0A2P5D5G0\|A0A2P5D5G0_PARAD	1.0e-03	56.14	Anaphase-promoting complex, subunit CDC OS=Parasponia andersonii OX=3476 GN=PanW...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G002220.1	CsGy2G002220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G002220	Csa2G008650	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G002220	CSPI02G02120	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G002220	CsaV3_2G003330	Cucumber (Chinese Long) v3	cgybcucB064

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G002220	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G002220	Cucumber (Gy14) v2	cgybcgybB050
CsGy2G002220	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G002220	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G002220	Cucurbita moschata (Rifu)	cgybcmoB142
CsGy2G002220	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G002220	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G002220	Cucurbita pepo (Zucchini)	cgybcpeB257
CsGy2G002220	Cucurbita pepo (Zucchini)	cgybcpeB262
CsGy2G002220	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G002220	Melon (DHL92) v3.5.1	cgybmeB116
CsGy2G002220	Melon (DHL92) v3.6.1	cgybmedB113
CsGy2G002220	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G002220	Watermelon (Charleston Gray)	cgybwcgB094
CsGy2G002220	Watermelon (Charleston Gray)	cgybwcgB133
CsGy2G002220	Watermelon (97103) v1	cgybwmB122
CsGy2G002220	Watermelon (97103) v1	cgybwmB154
CsGy2G002220	Silver-seed gourd	carcgybB0269
CsGy2G002220	Silver-seed gourd	carcgybB0573
CsGy2G002220	Watermelon (97103) v2	cgybwmbB098
CsGy2G002220	Watermelon (97103) v2	cgybwmbB151
CsGy2G002220	Wax gourd	cgybwgoB133