Csa1G568540 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACTCAGTCGCAATGAGATTCCTCAACCGTTTCAGAACTCCTTCTTCAAATTTTCCCACATCTTCATTCGGTATCTCTCTTTCTCTCTGTCTCATTTTGTTATTTAAGCACTATCTTCTTTCTATTATTACGAGTTGCTTTCGGTTCAGAGCTGAAGGAATTTCTCAAAGAAAATTTGTTTATGTTTTTTTTTTTTTTTTTATTTGAGTGGCCCAACCAAGAATTTGGCTGTTTTGTGTATTGGGTTTGTTTATCTCAGTGCAATATGTGTGCTGGAGTGATGGCTTGGATAATTATTCAACGTTTGCTTGTAGTGGCAAGTGCGCAAACAAGCTCGAAGTTTTGGTTATCGACCGGTGCTTCTGAAGGTGACAACGATGTTGAGAAGAACGATGGAGAAGAAGATGATTATGATACGTTTTCTAATGAATTACAGCCCCAGGGTGTTGATCCCACTCGAGGTTGGGGATATCGAGGCGTACATAAGGTATCTCATCCTTGTCTACAGATGTGTTTCATTTTTAAAAGTTGGGATTTGGAATCTTGTAGGCTGGGAATTTTACCCAATAAGTGATCTTTCTGTTCTTGTGATGACACTTTTTGTTTTTTTGGTGATAGTTTTATTTTTTTCAAATTCACAAACTATCCAAAATAAACGAAACAGCTTCCTTTTTTTCTCTTTTTGTTCTTAGAAAATGTGCCTAGTAACGATCTTACTTGGGTAAGATCTGTTCTATAGGCTGTACAGCGGTGTTTAGTTCTAAGAAAATGTGCCTGGTGACTTGCCTTCTTTTGTTGATAAGTTTTGAAGGAAATCTGGCCTCTTGCGTACTCTGCGTATTTTAGAAAGAATAAGAAGTGAGTAAGTTTTGTGAGCAAGGGCAAGAACAGAAAACTTAGGTGGCTAGAGCTTGAACTTTGAAGTCTGATGTAAGAGAGTAGGAATAACGAATATATGTGTTATATATTGTAAAATTCCAGGTGAGCAAGTAGGACGAGTAGTTTCTTAGCTAGGGAAAGTCTTGTAATTGAGTCTTAAAAGGAATTATAGGCAACAAGCAGAGTGAGTTTAGGAGAAACTCACCTCTGGAACTTCAATTGTTCTGGAATCTGTCCCCGATAGTGAAAGAGTTATTCTCACATGATAATTGGATTCATAATCTGCTTTTGTGGAATATAACCTTCTCTGTTTGTGATTCAAAAAAGCAAAACAAAATAAACAAAAACACAATTGAATATGTTAGCCAAGAGTTTCCTCTCTTTGGCAATTGATCAAACATTTTCCGTAGAGGATATATCGAAGTCTTTGGTATATATCCCATCCCAACTAAGCAAAAGAAGTTATTTTGATTCAGGTGATAAGATTATTGGAAAACGAGGGAAAAACAAGGGAAATCATTTCTTTTCATATTTGTGCAGGGAAGGAAGGGGTCAGTAATCCCCAATATGATATCTTATTCTGCTTTACAATGTGATCAAATGTTCACAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGGACGATAACAATCTTTACCGTTGGAACAGGAGGGATGTATGACCAACGAATTTTTGATGGAAGAGATCTGCCGAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACTACTTGGTGCTTATGCAGTTCAAAAACTTTGTAGAAAGTATGATTTGAACCTCTCATAATAACTGATTTGACTGTATAATTTCACTGAATCTCTGTGGACTTTCAGCGCGTCGGTTTATGTTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATATTCCAGAAATATGTGTTCGACGTGATGGTATTGCAACACATACTATTATCTTTTTATGTCCTTTTCAATTTTATTTGGAACTAGTTGAACACTTAATTAATATGAAGTTGTCATTTGTTAACTTCTCTGCTTTCTACATCTACTTCATTATTTCTTAAAATGTCATTTTAAGCAGATATTAAAGAGTATTCTTTGATTTTCATAATCATAAGGTTAAATTATCATATTAATTCCTGTCATTTGTACTTAGTCTTTCCTTTTATTTAAAAACGAAGTCCATCTTTTTAATAAAGTTTAGTTTTATTCTTCAATAAAGAGAGAAAGAGAGATGAAATTTTGACCACCATTTCACAATGATGGGTTCACCAGTTGATGCTAGCTGAGGAAAACACTGATCTTCCTCTGCCTAATGAAGAGGCGATTGGAATTAAGAGTGCTACGTAGTTGGAACCAACAACCTCTCTATAAAATCCTTTTCCGTTGAGTAAGGAAATGGTTTCGGCACCTCTTGAGTATAACTTGTGCATTTGGGCGATGCCTAGGAAAGGGGAAGCCGCAGACAAAGGGTAGGGGCCTCCTCGAATAATAAAAAGCTCACTAGAGAAATTAAAGCTTTGCTTGGTAGTTGGGAAAGGGAAGCTCAAGCAACCAAAGATAGTACTTCCCAGGGCTTCGATGGTGGTCCATGTTAATCTTATCTTGGAATGTTAGGGGTCTTAATTCTCGCCTCAAAAGAGTGGTTGTGAAAGATTTGTTAGTGAAGTTTAATTTGGATGTTGTTATTATCCAGGAATCTAAGGTTAGTGTTGTTGGCAATAATTTGGTAAAGTCTGTTTGGAGTAGCAGTCATATTAGGTGGGCTGCTTGAGAGGCTCTTTAGGTGGTATTCTTCTAATGTGGAAAGAGGATTCGATCATGGTGATTGACTCTATACAAGGTCAGTTCACTATCTCTATTCTTTGAAAAACTAATGTTGGCTTTTTTGGATGGATCACATGCGTGTACGGTCCCTCGTCTTATAGGCATGGAGACCAGTTTTGGCGGGAGCTTTCTGGTTTATATGGCCTCTCTAGTGAGTGTTGGTGCATTGGGGGAGACTCCAATGTGGTGAGATGGGTTAATGAGAAGAACTTGGACATTCGTTCTACTACAAGTATGAACACTTTTAACGGCTTGATTGAGGAGATGGATATAGTTGATATTCTCCTCTGAAATGGTCTGTTCTTGTGGTCCAGATTAGGGCTCAGACTGGCTGTGTCAAAACTCAACAAATTTTTTCTTTCCAAGCCTTGGGTTGATTTCTTTAGAGAAGTTAGGGTGGATAGACTTCCGCGTACCACCTGTTATCACTTCCCAATTCTCCTAAAGTTAGGGATGCAGTCCCGGGGTCCTACTCCCTTCAGATTTGAAAATGTTTGGTTGGATCATCATCTTTCCCTCAAAAATATCATGGAGAAATTAAGAGGTTTGAAGGTTTTATTGAAGGACTGGAACAAGGAAACTTCTGGCAATATCTTCTTCAAAAAGCAAGCATTACTTGACAAGATAAACTCTTTAGATTTGCTTGAAGAGTCTGGTCCCTTCGATGAAACTAATGCGGTGGAAATAGAAGAGTATAGAGGTGCCTTGCTTGATCTTATTGTTATGGAGCAAAGGATGTGGGTTCATAAATGTAAAATTCAATGGCTTCATGAGGGGAGAACTCAAGCTTCTTCCATAGGTGGGTTTCAGCCCGTACAAGTAAGAGTTTAATCTTGTCTATTGGGAACAATTCGGGTTAGGTCCTAGTCACGAACAATGCGGGTTAATGATGCTAGTAGTTTCACTACGAAGTCTACCTTTCTTAAATTATCCAAATGACCCTCCATCCATCACTGCACCGCTGGTTCGTTACATTTGGAAGGCTAAAATTCTAAAAAAGGTGAAGTTCTTCTAATGGTCGCTCGCCTATAGAAGTCTTTATTGAAAGTAGAGACAAACACACAAATTTACGTGGAAGTCCTAGTACAGGGAGAAAAACCACGGTACTGAAGATCTTTTATTTTCTAATAATTCATAAAGGTACAAAGGGGGAAAATTTATAGGCAACACGAGTCTAATTAAAAAAAATAAAAAATTAGGGTAAAGTAAATCTTAACTACCCATGGGCTTTCATTGTGACCTAAGTCCATTATTTCTAAGATTCTTAACACTCGAGAGAAACTTTACAAAAAATTACAGTACATTACGCCTGGTCCCTCGATGTGCTTCCTTTGCTTCAAAGATGAGGAAACCTTGGACTACTTATTTTTGCATTGTGTCTTTACTAGAAAAGCTTGGAATACTCTGTTCAAAATCTTTAATATGGAGATTTGTCTTCTTAGTAAGATTGATAGTTGAATGCTTGAAGGGTTCAATAGCATAGGCTTTAGTCCGAAGGGTAACATTTTATGGAGACGTGTTACTCGTTCCCTCTTGTGGTGTATTTGGAAAGAGAGGAATAGTAGAATATTTGAAGACAACTATAATTCTTTTGATTTTTTTTGGATGGTCAACACAGCGTCTTGGTGGAGTACGAATTACATCGAACACTTTTGTAATTACAGTTTTTCTATGATTTTCAACAATTGGAAGACCTTATTCTTTAGTTTTTATTTGGGAGGGCCCTCTTGCCCCTTGCCCTTAGGCTGTTCTCTTTTGTTCTTTAAATATGTTTGTTTCTTGTAAAAAAAAAAAGAGAATACTTTCCTTTTATTTTGTTTGATTTTTCAAAATGTCTCTAGTATAACAAAAAGTTGACAGTTACTTTACATGACACATTTTCCTTGGACATTAGCACATTTTCTTTGAATGTGAATCATGTGACAGAGAAGTGATGAGTTGTTGTCTAAAGATGGTATCAAGTAAGAAAAAAACTACCAGCATGTGGTAAACTCATAAGCATTTTGAAATACTGACCCAACGAATTGTAAAAAGAAAAAAAAGAGCCATAGAGACAGAAATGATAATTTATCCTCTAACCGTAATACGATACATACAGAAAATTATTTACAACCAAGCACAGAATACTATTGTTACACGTTGGTTCAAATGTCTTCCGTAAAACATACGATTTGGGACTCCTTTTAACTGCCATGCTTCATTTTTGCAGGGACGCTTCGCCTTTTAAAACCAGGAGAAAGTGCCAGCAATATTTCTCTAGACGATTTAAGTGAGATTTCCTGTTAACATTTTGTTTATTTGATCACGAACCATGGTAACAATGAAGTGCATGAAAACTTTTTCATTCTCTCCCAATCTGAGGTGTTTTTTTTCTTTTTCCTTATGTTTTTGTGACTGACAGAAGAAGGGTTGTTTTCGAACAAGACATAA ATGAACTCAGTCGCAATGAGATTCCTCAACCGTTTCAGAACTCCTTCTTCAAATTTTCCCACATCTTCATTCGTGGCAAGTGCGCAAACAAGCTCGAAGTTTTGGTTATCGACCGGTGCTTCTGAAGGTGACAACGATGTTGAGAAGAACGATGGAGAAGAAGATGATTATGATACGTTTTCTAATGAATTACAGCCCCAGGGTGTTGATCCCACTCGAGGTTGGGGATATCGAGGCGTACATAAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGGACGATAACAATCTTTACCGTTGGAACAGGAGGGATGTATGACCAACGAATTTTTGATGGAAGAGATCTGCCGAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACTACTTGGTGCTTATGCAGTTCAAAAACTTTGTAGAAACGCGTCGGTTTATGTTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATATTCCAGAAATATGTGTTCGACGTGATGGGACGCTTCGCCTTTTAAAACCAGGAGAAAGTGCCAGCAATATTTCTCTAGACGATTTAAAAGAAGGGTTGTTTTCGAACAAGACATAA ATGAACTCAGTCGCAATGAGATTCCTCAACCGTTTCAGAACTCCTTCTTCAAATTTTCCCACATCTTCATTCGTGGCAAGTGCGCAAACAAGCTCGAAGTTTTGGTTATCGACCGGTGCTTCTGAAGGTGACAACGATGTTGAGAAGAACGATGGAGAAGAAGATGATTATGATACGTTTTCTAATGAATTACAGCCCCAGGGTGTTGATCCCACTCGAGGTTGGGGATATCGAGGCGTACATAAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGGACGATAACAATCTTTACCGTTGGAACAGGAGGGATGTATGACCAACGAATTTTTGATGGAAGAGATCTGCCGAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACTACTTGGTGCTTATGCAGTTCAAAAACTTTGTAGAAACGCGTCGGTTTATGTTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATATTCCAGAAATATGTGTTCGACGTGATGGGACGCTTCGCCTTTTAAAACCAGGAGAAAGTGCCAGCAATATTTCTCTAGACGATTTAAAAGAAGGGTTGTTTTCGAACAAGACATAA MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTFSNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT*
BLAST of Csa1G568540 vs. Swiss-Prot
Match: SSBP_ARATH (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 9.3e-70 Identity = 134/212 (63.21%), Postives = 160/212 (75.47%), Query Frame = 1
BLAST of Csa1G568540 vs. Swiss-Prot
Match: SSB2_SALTY (Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ssb2 PE=3 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09 Identity = 36/114 (31.58%), Postives = 60/114 (52.63%), Query Frame = 1
BLAST of Csa1G568540 vs. Swiss-Prot
Match: SSBP_ECOLX (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb PE=3 SV=3) HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09 Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 1
BLAST of Csa1G568540 vs. Swiss-Prot
Match: SSBR_ECOLX (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb PE=3 SV=2) HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09 Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 1
BLAST of Csa1G568540 vs. Swiss-Prot
Match: SSB7_ECOLX (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb PE=1 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 9.2e-09 Identity = 34/114 (29.82%), Postives = 60/114 (52.63%), Query Frame = 1
BLAST of Csa1G568540 vs. TrEMBL
Match: A0A0A0LVY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568540 PE=4 SV=1) HSP 1 Score: 438.7 bits (1127), Expect = 4.0e-120 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1
BLAST of Csa1G568540 vs. TrEMBL
Match: A0A067GQ74_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028045mg PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75 Identity = 142/213 (66.67%), Postives = 170/213 (79.81%), Query Frame = 1
BLAST of Csa1G568540 vs. TrEMBL
Match: V4SGF4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002449mg PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75 Identity = 142/213 (66.67%), Postives = 170/213 (79.81%), Query Frame = 1
BLAST of Csa1G568540 vs. TrEMBL
Match: B9STF2_RICCO (Single-stranded DNA-binding protein, mitochondrial, putative OS=Ricinus communis GN=RCOM_1318760 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 9.7e-74 Identity = 141/213 (66.20%), Postives = 170/213 (79.81%), Query Frame = 1
BLAST of Csa1G568540 vs. TrEMBL
Match: A0A068V919_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00000711001 PE=4 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72 Identity = 138/214 (64.49%), Postives = 164/214 (76.64%), Query Frame = 1
BLAST of Csa1G568540 vs. TAIR10
Match: AT4G11060.1 (AT4G11060.1 mitochondrially targeted single-stranded DNA binding protein) HSP 1 Score: 264.6 bits (675), Expect = 5.2e-71 Identity = 134/212 (63.21%), Postives = 160/212 (75.47%), Query Frame = 1
BLAST of Csa1G568540 vs. TAIR10
Match: AT3G18580.1 (AT3G18580.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 98.6 bits (244), Expect = 5.0e-21 Identity = 52/160 (32.50%), Postives = 88/160 (55.00%), Query Frame = 1
BLAST of Csa1G568540 vs. NCBI nr
Match: gi|449435603|ref|XP_004135584.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus]) HSP 1 Score: 438.7 bits (1127), Expect = 5.8e-120 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1
BLAST of Csa1G568540 vs. NCBI nr
Match: gi|659099379|ref|XP_008450570.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo]) HSP 1 Score: 396.7 bits (1018), Expect = 2.5e-107 Identity = 193/214 (90.19%), Postives = 200/214 (93.46%), Query Frame = 1
BLAST of Csa1G568540 vs. NCBI nr
Match: gi|657957797|ref|XP_008370401.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [Malus domestica]) HSP 1 Score: 299.7 bits (766), Expect = 4.2e-78 Identity = 148/216 (68.52%), Postives = 171/216 (79.17%), Query Frame = 1
BLAST of Csa1G568540 vs. NCBI nr
Match: gi|657957799|ref|XP_008370402.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X2 [Malus domestica]) HSP 1 Score: 296.6 bits (758), Expect = 3.5e-77 Identity = 149/216 (68.98%), Postives = 172/216 (79.63%), Query Frame = 1
BLAST of Csa1G568540 vs. NCBI nr
Match: gi|657992497|ref|XP_008388504.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [Malus domestica]) HSP 1 Score: 296.2 bits (757), Expect = 4.6e-77 Identity = 147/216 (68.06%), Postives = 169/216 (78.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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