Lsi06G000700 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G000700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Single-stranded DNA-binding protein
Location	chr06 : 622276 .. 629454 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTTATAATCTCTCCATTTGCTTGTTCGAAAATCCTATTTCAAGGTGGTTGTTTTTTGTTGCCATCAAATTAATTAATACTTGTATAATGGAATGGACACGATCCTTTCTTTTGATTTGTTGGGTTTTTGTTATCGGTGAATCATTTGAGGTAGCTAAAGTATGACCTAGATATTGTTTTTGGGTAAAAATGGATGCATCAAGTAACTAGCCAAGTTGCTAACGTAGCTAAAGTGGTGATAAATTTCATCAGTAAAATGAGGACTCATCAGTAAAATGGGTCCTCATTGACTAAGTATTAAGTAAGAAAACTCCATATTTGTAAGTACACAAAAGCAACTAGAGGTAGTCGTTGGAGGTGATATTTGGAGTTGACCGCCGAATGTAGTTGTCTGAGCTAGTCGCAGAGGTGGTTGTGGTCAAAATTGAGCATAAAAGGTTGTCTTCGTTGGAGTTGGTTGTCGACGGTTGGAGTTATTGGAAACATTGGAGGGAGGAAGAGCTACAACAAAACAGGGTTAAAATACTCTTATTCCCTATTTTCTTAACGGACTTTCTACACATATAGCATAAATAAATAGGTTTGTCTAAACTTTCCTATTTCTTACATGAATATCCTAATGAGCTATTATTTTACACAAAAGTCTGACCTAATTTACTTTTTCAACCCTCTTTACAATTTACTTTGTTAAAATTATATATAATAATATTAATATTAAAAGAAATATGTAAGAGAAATTTCTGCAGTTATAGTCTTCCTAAAACGAATCTCTTTACAAAACATACACAAGTAAAGAAAGTCCATTAAAAAATCCGAAAATTATTGTCCTCGTAAATGGAAACAAGAATCAACAAGAAGCTTCAAAAGAGAAAACAATGTATATTGATATATACAATACTATATATTTGAATTTTCTAGAACTAAACAATGATATATTTGATAAGTGTATGAACAAGACAATTTGTACAATATATCATCTTATATACCGAACAGTATATGCAATGTATATTCATATTTTCCAGTATATTTGTAAACACACCAAAAAATAAATTATGGTATATGTGATGTATATTTACATTTTACAATATATTACTAGTATATTCGACATATACTTGAGGTCTCAATTGAGAGGTGATCTAAACTTTAATTTGAAATACATGCATTAAATGAATATCAACCAAAATTTATAATTACAAAACCAAAGTCGAAATTCAAAAATGATGTTAATAAGAAAAGAATTAAATATTTCAAAATTTTATTGATGAGAGATAATGTAATTAATAATATTTCAAAAAAAATAAAATCCTTATATAATTAATAATAAATTTGGAAATGATATATATTTTTATTTCAAAATATTACGAAATTAAAAGATAAGAGAGAATATCAAAAGGTTAAAATTGTTCAAAGATGTTGCTAAAATCTAGTTATGAAATATTACTAAATTTTAGGATATTTGTGAAATATTAGTTATATAGTAGGCTAATTCCAAACTTTCTTTCTTAACACACCCTTAAACAGGTGGATTATTCTACCCCGCTTAACCTATTCTAAATTGGTGTCTCAAACACCTTCTAAGTCTTTACAAAATTAAAATTTGTGATTAAGTTTAATGAGAGTTTTCATGAGAGAGACTAAATTATTACAAATTTTAAATTATAAAAGACGAAATGGCTACAAATCTGAAAACTTGAGAACTAAGGCCCCCGTTGGTAACCATTTGATTTTTTGTTTTTTGTTTTTGAAAATTAAGCCTAAAAACACATTTTTCATCACTAAATTTTTTGCTTTGTTACCTACTTTTTGCCAATGAAGTTTTGAAAACTAGGTTCCATTTGGTAACTATTTGATTTTTTATTTTTTGTTTTTGAAAATTAAGCCTATAGAGACTACTTTCACATCTAAATTTCTTCCTTTGTTATCTACTTTTTACCAATGGTTTAAAAAATCATGCCAAATTTTGAAAACTAAAAAACCGTAGCTTTTAAAAACTTGTTATTATTTTTAGAATTTGGCTAAGAATTCAACCATTATACTTAAAAAAAAAGATGCAAATCATTATAAGAAATGGGGAGGAAATATGTTTAATTTTCAAAAACCAAAAACAAAAAAACGAAATGGTTACCAAACAGGATTTAAAAAAAAAGTAGTTTTTAAAAGGTAGATTTTTTTTTAATAAAAGAATTTGGCTAAGAATTCAACTCTTTTACTTAAGAAAGATGAAAACCATTGTACGAAATTGGAAAGAAATAGGCTTAACATCAAAAACCAAATAATTATCAAATGATGGCTAAATTGTTACGAATTTTATCGCTCCTTCCTTTTGTTCGTCATCAGACATAACTGCAATTTTTTCCTTTAATTTTTTTCCTTTGTTAAGATTCTTCCTTTCATTTGTTGCTCCTACTTATCACTTCTCACTTTTGCTCCTTTTTCTAGTTCCTCATTAGGCACAACTGTAACTTTTTTCTTCGATTTTTTCCTTTGTTCAAATTCTTTCTCTCGCTTCTCACTCCTTCCTCTTGTTTCTCATCAGATAGAACTGCAATTTTTTTTTTAAAAAAAACGGTAGAACAAAGAAGGAAGATAACTATTTCTTGAAGAACGAAGAAGAAGAACGCAGAAAAAAATGGAAGAAGGAGGAGAAGAAGAAGACAATGACACATAACCAACGAGAAACAAAAAGTTAGAAGAAGAAATGCAAAAAAAAAGTAAAAAAAAAAAAAGAAAAGAAAGAAGAAGAAATGTAGAAAAACGAAAAGAAAGAAAGAAGGCTGCAAAAGAAAGAATGAACAAGAAAGAAGGATTAAAGTGGTAATTTCATATGATGACAACATCAACATAATGCCAAAATTCATTTGTTTTGAAAGTTAGGTCTACTTTTCATTTGAGCAATTATTGATATTTCTCAAACATGTTTAACCAAAATAATAATAAATAAATAAATAAGTAAATAAGTAGCAAGAGCCTAAAACCCTTCTTCTACCCTGATCGAATCGTCACTTCCATTTCTGCTCTCTCTCGATCAACATGAACACAGTCGCAATGAGATTCCTCAAGCGTTTCAGAATTTCTTCTTCAAATTCTCCCACATCTTCGTTTGGTACTCTCTCTCCCTCTCTCACTTTGTTAATTAAGGCGTATGTTCTTTCTGTTATTCGAATTGCTTTCGGTTGAGAGCTGAAGGAATTTCCCAAGACGTTTCTATGGTTAACTGTCCAAAAGCTCGTTAGATTTTTTTGCAATTTGATCTTCGGAGTGAGTTTTTATCAAATACATGCTGGGGGAACTTGTTTATGTTTTTTAATTTGAGTGGCCCAACCAAGAATTTCGCTATTTTTGTGTATTGAGTTTATCTAAGTGTAATGTGTGTGCTGGAGGGATGGATTGGTTAATTCTTGAACGTTTGGTCGTAGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGACATAGATGTTGAGAAGAACAATGGAGAAGAAGAATATGATGAATTGTTTAATGATAAAATTGATTCACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGTATCTGATCTTTGTCTATAGACGTGTTCCATTTCTAAAAGTTGGAATTTTTCCCAATAAGTGAACATTCTGTTCTTTTGATGATACTTCGTGATTTTTTGGTGATTGTTTTACTTTTTTACAAACTATCCAAAATAAAGACAAGAGTTTCCTCTCTTTGGCAATTGATCAAATATCTTCCTTGGTGGGTTATATTAAGTTCATCCTCAACTAAGCAAAAGAAATTGTCTTTAATTCAGGCGATAAGAGTATGTGAAAACGAGGGAAAACCAGAGAAATGATTTCTCTTCAAATTTGTTATTCTTCTGCAGGGAAAGAAGGGGTCAGCGATCCCCAATATGATGTCTTATTCTGTTTTAAAATGTGACAATATGTTTACAGGCAATAATTTGTGGAAAGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAGATGGGCGCATGATAACGATCTTTACGGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAGGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAAATTGTTAAAAAGTATGATTTGAACTTCTCATAAAAGCTAGTTTGTCTGTATAATTTCACTGATTCTTGGTGGACTGTCAGTGCATCAGTTTATGTTGAGGGCGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATGTTCCAGAGATATGTGTTCGACGCGATGGTATAGTAACACATACTATTGTTTTTTTATTTCCTTTTGAATGGTTCTCTGAAATTAGTTGAACAGTGATAACTTCTGATAACTTCTGTTCTTTCTGCATCTACTTCATTATATCTTAAATGTCAGTTTAAGCATATAAAAGGGTGTTTTTGGATGTTCATAATTATAACGTTAAATTATCATATTAGTTCCTATCATTTGTACTTTAGATTTTAATTTAGCTCCTATAATTTTAAAGGTTCCAATTTAGTCCCTTTTATTTTGTTTGATTTTCCAAAATGTCTCTAGTATAACAAAAAGTTGACAATTATTTTACATGACAAATTTTCTTTGGACATAACACATTTTCTTTGGGTATGATAGAGAGGTGATGAGTTGGTGTCTAAAGAATATGTATCATGTAAGAAAAGTGCCAGCAAGTGGTAAACTCTCAAGTGTTTTGAGATATTTACCAGTAATGGGGACCAAGTTGAAATTCTTGAAACCATAGGAAAAAACAAACAAACAAACAATAGAGACAAAAATGGTAATTTATCCTAATCTTAATACGGTACAAACAGAAAATTATTTACAACCATGCACAGAATACTTTTTGTTACATGTTTATTCTTATGTGATCTGTGAAAGGCCTTGTTAGGGACTCCTTTAACTGCCATGCTTCATTTTTGCAGGGAAGATTCGCCTTTTAAAGCCCGGAGAAAGTGCCAGCCATATTTCTCTAGACGATTTAAGTGAGTTAGCCTGTTAACCATTTTGTTTATATGATCACTAAGCATGGTAACAATGCAGTGCATGACAACTTTTTCATTCTCTATCGCAATCTGATGTGTTATTTTTTACTGGTTTTGTGACTTACAGAAGAAGGGTTGTTTCAGAACGAGACATAATTGCCATAACATGTTGCCAAAAACCTCAGTCAGTTGAAGTTTGTGTAGCTTTGTAATTTGGACACGAGAGAGAGGGAGAGAGAGAGAGAGAGGCTGTTAATTGCCATTAGACGATTGAACTATAGTTGAGTACTGAACCACCAATCCCCCATAATCTCTTCCTGCAATTGTTTATTAACATTGTAGCATTTTCTTCTTCAAGGCTTTAAGCCAGTTTTGTGTTGGATTGGCAAGGGATATTATAGGTTCACAAGAGCTGTCACTGCTGTTATCTTTAATCTCCTTTAAATGCACTCCTAAAAATGAAGGCATCATAATTTTGAAATCCACATTATTAAAATTTAAATATAGTTCACTAGTCTTGTTGCTGTACATTGTTAAGTTTTGCTTGATAACCGCTTTATGGATGATCCCTATTTCAGAGGAGATTATTACAATCTTTTCCCTATTGCTGTTTAAAATAATCCTTAGAAAAAATATTTTGTTTCCATTTGGCTTTTGGTTTGAAGACTAATTGAATCAATGGTTAGCCTGTGCTTGAACGATGACATTGCAAGAAGCAACTTTCTATAGTATGGGATGGTCCTATTGACAATGATTTTCACCTTTTGCAATGGCACACACAGGAATTCATTGTCAAATTTAAGCACATTTAAAAGTTTAACACAAAGAAATTTAAGCACATTTATAAGTTATTTTTCAAGAACTAATATCAAACCTAGAATACTGTCTGATTCCCATGTAGACTCTTCATGTCTGGTTAACAAAAATGTGAATGGCAGTGAAAAGCTACTGAAAATTTCCTTAACGCAAAGCTGAAGAGTTCAAATGAAAATCGCAAATGTCATCTTGAATTGTATGGGTCATTACAATTGCAATTGAAGTTTAAATTTAAGCATTTTCTATGGAAATTGATGCAAATTATCAAGCAAAGTAAAAGTAGAAGCAGAATGTGAAAAAATGCTAAGAAGACAATGGGACAGTCACAAAACAATCTACAATTTACTCTAAAATTGAAGTTGTTAGCAATCAAACAGTCAAAGCAATTTTGTCTGATATCCATGTTTGTCTATCTTGTCAGTCAGTCAGTCCAACAGCTGAGCAAGAAACCAAATGAAATCAAGCTTTTTAGAAGTCTCCAAAACATCTTTTCTTCTACCAACTCTTTCTTTTATCTCAACCTCATTTTCTTACACGCATCTATAACAATCACCACAAGGGAAAGACAAAAAAAAGAAAAAAAAAAAAAAAAAACAAGCATGCTCACACTGCCAGATGAGGGAAAAAAAATTTATATGGAGTTATCAACATATACTATGTTATGGGATAAATTACTAAACGGTTATTGTAGGTTTTATTGGCCTTTTTCCTTCCATGGCGTCTTTCTTTTTTCTACAAGTTGCACAGAGGAATGGACCTTCCCATGGTTTCGATGACGGTGAAAAGAAAGGCCCCGAGTTCATCGACAAATTTTCATTTGGGGGTTGATCCACTTGACAGACTGCACATTTGAAGATCCCTGAGTTTGGATCCGAAGGAAAATCTTTGCCTAGCCTGCATTTCGATTGAGATGGGAGAAAGTTCAGGAATAAGTGATAGTGAACATGTTTTAAGTCACTTCAGATGGAAATTGCAATATTACTGCAGAATACCAGCTGTTTTTCTATTACTATAACAAGTTAGGCAGAATTAGAAAAAGAGAATCGACAATGAAAAAGAAAATCAAATGTGTCTGGTTAATTACAGTATGATATATATCAATAATGAAGAAAATAATCCTAGGAAACTATCCTAAGCTAAGAGCACTTTTACTAACAATATAGCAAGTTTGAAAGAATAACAGTCATGGTCAAATTCGACGTGGGATATCGACTAATCTCACAGGACAACCCACCTGATCCTACAACATTTGGGTGTCAAGGAAACCCGTAG

mRNA sequence

ATGGTTTGTAATGTGTGTGCTGGAGGGATGGATTGGTTAATTCTTGAACGTTTGGTCGTAGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGACATAGATGTTGAGAAGAACAATGGAGAAGAAGAATATGATGAATTGTTTAATGATAAAATTGATTCACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGGAAAGAAGGGGTCAGCGATCCCCAATATGATGTCTTATTCTGCAATAATTTGTGGAAAGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAGATGGGCGCATGATAACGATCTTTACGGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAGGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAAATTGTTAAAAATGCATCAGTTTATGTTGAGGGCGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATGTTCCAGAGATATGTGTTCGACGCGATGGGAAGATTCGCCTTTTAAAGCCCGGAGAAAGTGCCAGCCATATTTCTCTAGACGATTTAAGTGAAAGAAGGGTTGTTTCAGAACGAGACATAATTGCCATAACATGTTGCCAAAAACCTCAGTCAGTTGAAAGGAATGGACCTTCCCATGGTTTCGATGACGGTGAAAAGAAAGGCCCCGAGTTCATCGACAAATTTTCATTTGGGGTCATGGTCAAATTCGACGTGGGATATCGACTAATCTCACAGGACAACCCACCTGATCCTACAACATTTGGGTGTCAAGGAAACCCGTAG

Coding sequence (CDS)

ATGGTTTGTAATGTGTGTGCTGGAGGGATGGATTGGTTAATTCTTGAACGTTTGGTCGTAGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGACATAGATGTTGAGAAGAACAATGGAGAAGAAGAATATGATGAATTGTTTAATGATAAAATTGATTCACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGGAAAGAAGGGGTCAGCGATCCCCAATATGATGTCTTATTCTGCAATAATTTGTGGAAAGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAGATGGGCGCATGATAACGATCTTTACGGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAGGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAAATTGTTAAAAATGCATCAGTTTATGTTGAGGGCGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATGTTCCAGAGATATGTGTTCGACGCGATGGGAAGATTCGCCTTTTAAAGCCCGGAGAAAGTGCCAGCCATATTTCTCTAGACGATTTAAGTGAAAGAAGGGTTGTTTCAGAACGAGACATAATTGCCATAACATGTTGCCAAAAACCTCAGTCAGTTGAAAGGAATGGACCTTCCCATGGTTTCGATGACGGTGAAAAGAAAGGCCCCGAGTTCATCGACAAATTTTCATTTGGGGTCATGGTCAAATTCGACGTGGGATATCGACTAATCTCACAGGACAACCCACCTGATCCTACAACATTTGGGTGTCAAGGAAACCCGTAG

Protein sequence

MVCNVCAGGMDWLILERLVVVASRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLLKPGESASHISLDDLSERRVVSERDIIAITCCQKPQSVERNGPSHGFDDGEKKGPEFIDKFSFGVMVKFDVGYRLISQDNPPDPTTFGCQGNP

Homology

[Close]

BLAST of Lsi06G000700 vs. Swiss-Prot
Match: SSBP_ARATH (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 8.0e-64
Identity = 121/197 (61.42%), Postives = 149/197 (75.63%), Query Frame = 1


Query: 23  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKGK 82
           S +  SK W STG  +  +       EE+++E   ++ + QP GVDPR+GWG+RGVH+  
Sbjct: 23  SAERGSKSWFSTGPIDEGV-------EEDFEENVTERPELQPHGVDPRKGWGFRGVHR-- 82

Query: 83  KGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRPAQ 142
                       AIICGKVGQAP+QKILR+GR +TIFTVGTGGMFDQR+V A + P+PAQ
Sbjct: 83  ------------AIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPKPAQ 142

Query: 143 WHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRL 202
           WHRIAVHNE LG+YAVQ++ KN+SVYVEGDIETRVYNDSI+ EVK++PEICVRRDGKIR+
Sbjct: 143 WHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRM 198

Query: 203 LKPGESASHISLDDLSE 220
           +K GES S IS D+L E
Sbjct: 203 IKYGESISKISFDELKE 198

[Close]

BLAST of Lsi06G000700 vs. Swiss-Prot
Match: SSB_RICBR (Single-stranded DNA-binding protein OS=Rickettsia bellii (strain RML369-C) GN=ssb PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-07
Identity = 31/120 (25.83%), Postives = 61/120 (50.83%), Query Frame = 1


Query: 97  ICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRPAQWHRIAVHNEPLGAY 156
           + G +G+ P  +   +G+ I   ++ T  ++  R+   K      +WHR+ + NE L + 
Sbjct: 10  LIGNLGRDPEIRTTGEGKEIANLSLATTDIWKDRVTGEKK--EKTEWHRVVIFNEGLVSV 69

Query: 157 AVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLLKPGESASHISLDD 216
               + K + +Y+EG ++TR +NDS +G  K   EI ++      +L   ++++  SL D
Sbjct: 70  VKNYVKKGSKLYIEGSLQTRKWNDS-SGVEKYTTEIVLQNFNSQLILLDSKNSTSSSLQD 126

[Close]

BLAST of Lsi06G000700 vs. Swiss-Prot
Match: SSBP_MOUSE (Single-stranded DNA-binding protein, mitochondrial OS=Mus musculus GN=Ssbp1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-07
Identity = 32/109 (29.36%), Postives = 56/109 (51.38%), Query Frame = 1


Query: 79  HKGKKGSAIPNMMSYSAI-ICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEA 138
           H+ +  S++    S + + + G+VGQ PV + +     +TIF++ T  M+   D  + + 
Sbjct: 16  HESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSEVYQM 75

Query: 139 KDLPRPAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSIN 184
            D+ +   WHRI+V    L   A Q + K A ++VEG ++   Y D  N
Sbjct: 76  GDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNN 124

[Close]

BLAST of Lsi06G000700 vs. Swiss-Prot
Match: SSBP_PONAB (Single-stranded DNA-binding protein, mitochondrial OS=Pongo abelii GN=SSBP1 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-07
Identity = 32/109 (29.36%), Postives = 56/109 (51.38%), Query Frame = 1


Query: 79  HKGKKGSAIPNMMSYSAI-ICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEA 138
           H+ +  S++    S + + + G+VGQ PV + +     +TIF++ T  M+   D  + + 
Sbjct: 16  HESETASSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQL 75

Query: 139 KDLPRPAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSIN 184
            D+ +   WHRI+V    L   A Q + K + +Y+EG I+   Y D  N
Sbjct: 76  GDISQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNN 124

[Close]

BLAST of Lsi06G000700 vs. Swiss-Prot
Match: SSBP_HUMAN (Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.9e-07
Identity = 29/90 (32.22%), Postives = 47/90 (52.22%), Query Frame = 1


Query: 97  ICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPL 156
           + G+VGQ PV + +     +TIF++ T  M+   D  + +  D+ +   WHRI+V    L
Sbjct: 35  LLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGL 94

Query: 157 GAYAVQQIVKNASVYVEGDIETRVYNDSIN 184
              A Q + K + +Y+EG I+   Y D  N
Sbjct: 95  RDVAYQYVKKGSRIYLEGKIDYGEYMDKNN 124

[Close]

BLAST of Lsi06G000700 vs. TrEMBL
Match: A0A0A0LVY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568540 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.6e-77
Identity = 149/199 (74.87%), Postives = 168/199 (84.42%), Query Frame = 1


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHK 80
           VAS QTSSK WLSTGASE D DVEKN+GEE+  + F++++  QPQGVDP RGWGYRGVHK
Sbjct: 25  VASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTFSNEL--QPQGVDPTRGWGYRGVHK 84

Query: 81  GKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRP 140
                         AIICG+VGQAPVQKILR+GR ITIFTVGTGGM+DQRI + +DLP+P
Sbjct: 85  --------------AIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFDGRDLPKP 144

Query: 141 AQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKI 200
           AQWHRIAVHNE LGAYAVQ++ +NASVYVEGDIETRVYNDSINGEVKN+PEICVRRDG +
Sbjct: 145 AQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTL 204

Query: 201 RLLKPGESASHISLDDLSE 220
           RLLKPGESAS+ISLDDL E
Sbjct: 205 RLLKPGESASNISLDDLKE 207

[Close]

BLAST of Lsi06G000700 vs. TrEMBL
Match: M5WHL0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017404mg PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.9e-68
Identity = 139/198 (70.20%), Postives = 156/198 (78.79%), Query Frame = 1


Query: 23  SRQTSSKLWLSTGASESDID-VEKNNGEEEYDELFNDKIDS--QPQGVDPRRGWGYRGVH 82
           S Q SSKLW S+ +S+   D  +K   EE++DE+  +K DS  Q Q VDPRRGWG+RGVH
Sbjct: 2   SVQRSSKLWCSSTSSDIGNDETKKTVAEEDFDEILGEKKDSHFQAQSVDPRRGWGFRGVH 61

Query: 83  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 142
           K              AIICGKVGQAPVQKILR+GR +TIFTVGTGGMFDQRI  AKDLPR
Sbjct: 62  K--------------AIICGKVGQAPVQKILRNGRTVTIFTVGTGGMFDQRIEGAKDLPR 121

Query: 143 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 202
           PAQWHRIAVHNE LGAYAV+Q+ KN+S+YVEGDIETRVYNDSINGEVKN+PEICVR DGK
Sbjct: 122 PAQWHRIAVHNEALGAYAVKQLFKNSSIYVEGDIETRVYNDSINGEVKNIPEICVRYDGK 181

Query: 203 IRLLKPGESASHISLDDL 218
           IRL+K GES S ISLDDL
Sbjct: 182 IRLIKTGESISSISLDDL 185

[Close]

BLAST of Lsi06G000700 vs. TrEMBL
Match: B9STF2_RICCO (Single-stranded DNA-binding protein, mitochondrial, putative OS=Ricinus communis GN=RCOM_1318760 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.7e-66
Identity = 133/200 (66.50%), Postives = 154/200 (77.00%), Query Frame = 1


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           V   Q S K   ST +   + DV KNN  +EE+D+   +K + Q QGVDPR+GWG+RGVH
Sbjct: 25  VVGLQRSFKTLYSTESFSGENDVGKNNELDEEFDDFLGEKPELQIQGVDPRKGWGFRGVH 84

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICGKVGQAPVQKILR+GR +TIFTVGTGGMFDQRIV AKDLP+
Sbjct: 85  K--------------AIICGKVGQAPVQKILRNGRTVTIFTVGTGGMFDQRIVGAKDLPK 144

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNE LGAYAVQQ+ KN+SVYVEG+IETRVYNDSI+GEVKN+PEIC+RRDGK
Sbjct: 145 PAQWHRIAVHNETLGAYAVQQLAKNSSVYVEGEIETRVYNDSISGEVKNIPEICIRRDGK 204

Query: 201 IRLLKPGESASHISLDDLSE 220
           IRL+  G++ S IS DDL E
Sbjct: 205 IRLVTSGKNVSDISFDDLRE 210

[Close]

BLAST of Lsi06G000700 vs. TrEMBL
Match: D7U9Z5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01620 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 6.0e-66
Identity = 134/201 (66.67%), Postives = 157/201 (78.11%), Query Frame = 1


Query: 20  VVASRQTSSKLWLSTGASES-DIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGV 79
           +V   Q +SK W ST + +  D D +   GEE  ++L  +K + Q QGVDPR+GWG+RGV
Sbjct: 19  LVVGVQKNSKAWYSTVSFDGGDGDGKNGEGEESDNDLVTEKPNLQLQGVDPRKGWGFRGV 78

Query: 80  HKGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLP 139
           HK              AIICGKVGQAPVQKILR+GR +TIFTVGTGGMFDQRI   KDLP
Sbjct: 79  HK--------------AIICGKVGQAPVQKILRNGRTVTIFTVGTGGMFDQRI-GGKDLP 138

Query: 140 RPAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDG 199
           +PAQWHRIAVHNEPLGAYAVQQ+VKN+SVYVEGDIE RVYNDSINGEVK+VPEIC+RRDG
Sbjct: 139 KPAQWHRIAVHNEPLGAYAVQQLVKNSSVYVEGDIEVRVYNDSINGEVKHVPEICIRRDG 198

Query: 200 KIRLLKPGESASHISLDDLSE 220
           +IRL+K GES S+IS+D+L E
Sbjct: 199 RIRLIKTGESISNISVDELRE 204

[Close]

BLAST of Lsi06G000700 vs. TrEMBL
Match: A0A061FAS7_THECC (Mitochondrially targeted single-stranded DNA binding protein isoform 2 OS=Theobroma cacao GN=TCM_026723 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.5e-64
Identity = 130/204 (63.73%), Postives = 153/204 (75.00%), Query Frame = 1


Query: 20  VVASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQP---QGVDPRRGWGY 79
           +VA  Q +SKLW STG+  S+ D  K N  EEE D+   DK D +    QGV+P  GW Y
Sbjct: 24  LVAGVQRTSKLWCSTGSVGSENDEGKGNEMEEEIDDFLGDKSDKREPMLQGVNPASGWNY 83

Query: 80  RGVHKGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAK 139
           RGVH+              AIICGKVGQAP+QKILR+GR +TIFTVGTGGM+DQRI+  +
Sbjct: 84  RGVHR--------------AIICGKVGQAPIQKILRNGRTVTIFTVGTGGMYDQRIIRDQ 143

Query: 140 DLPRPAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVR 199
           + P+PAQWHRIAVHN+ LGAYAVQQI KN+SVYVEGDIETRVYNDSINGEVK +PEIC+R
Sbjct: 144 NTPQPAQWHRIAVHNDALGAYAVQQITKNSSVYVEGDIETRVYNDSINGEVKYIPEICIR 203

Query: 200 RDGKIRLLKPGESASHISLDDLSE 220
           RDG+IRL+K GE  S+IS DDL E
Sbjct: 204 RDGRIRLIKTGEGVSNISFDDLRE 213

[Close]

BLAST of Lsi06G000700 vs. TAIR10
Match: AT4G11060.1 (AT4G11060.1 mitochondrially targeted single-stranded DNA binding protein)

HSP 1 Score: 245.4 bits (625), Expect = 4.5e-65
Identity = 121/197 (61.42%), Postives = 149/197 (75.63%), Query Frame = 1


Query: 23  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKGK 82
           S +  SK W STG  +  +       EE+++E   ++ + QP GVDPR+GWG+RGVH+  
Sbjct: 23  SAERGSKSWFSTGPIDEGV-------EEDFEENVTERPELQPHGVDPRKGWGFRGVHR-- 82

Query: 83  KGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRPAQ 142
                       AIICGKVGQAP+QKILR+GR +TIFTVGTGGMFDQR+V A + P+PAQ
Sbjct: 83  ------------AIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPKPAQ 142

Query: 143 WHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRL 202
           WHRIAVHNE LG+YAVQ++ KN+SVYVEGDIETRVYNDSI+ EVK++PEICVRRDGKIR+
Sbjct: 143 WHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRM 198

Query: 203 LKPGESASHISLDDLSE 220
           +K GES S IS D+L E
Sbjct: 203 IKYGESISKISFDELKE 198

[Close]

BLAST of Lsi06G000700 vs. TAIR10
Match: AT3G18580.1 (AT3G18580.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-19
Identity = 57/192 (29.69%), Postives = 104/192 (54.17%), Query Frame = 1


Query: 23  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDS--QPQGVDPRRGWGYRGVHK 82
           SR+    L  +   S++ +    NN     D  F D+++S  +P+  DP     + G  +
Sbjct: 9   SRRLYRSLLSNPRISQASMSFCTNNITSPEDSDF-DELESPIEPKASDPVSR--FSGEER 68

Query: 83  GKKGSAIPNMMS---YSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDL 142
             +   + N +    + AI+ G+VGQ P+QK L+ GR +T+F+VGTGG+ + R     + 
Sbjct: 69  VMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRRPLINED 128

Query: 143 PRP------AQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPE 202
           PR        QWHR++V+ E L    ++ +     +Y+EG++ET+++ D + G V+ + E
Sbjct: 129 PREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIRE 188

Query: 203 ICVRRDGKIRLL 204
           + +RR+G++  L
Sbjct: 189 VAIRRNGRVVFL 197

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: gi|449435603|ref|XP_004135584.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 3.7e-77
Identity = 149/199 (74.87%), Postives = 168/199 (84.42%), Query Frame = 1


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHK 80
           VAS QTSSK WLSTGASE D DVEKN+GEE+  + F++++  QPQGVDP RGWGYRGVHK
Sbjct: 25  VASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTFSNEL--QPQGVDPTRGWGYRGVHK 84

Query: 81  GKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRP 140
                         AIICG+VGQAPVQKILR+GR ITIFTVGTGGM+DQRI + +DLP+P
Sbjct: 85  --------------AIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFDGRDLPKP 144

Query: 141 AQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKI 200
           AQWHRIAVHNE LGAYAVQ++ +NASVYVEGDIETRVYNDSINGEVKN+PEICVRRDG +
Sbjct: 145 AQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTL 204

Query: 201 RLLKPGESASHISLDDLSE 220
           RLLKPGESAS+ISLDDL E
Sbjct: 205 RLLKPGESASNISLDDLKE 207

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: gi|659099379|ref|XP_008450570.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 4.8e-77
Identity = 150/206 (72.82%), Postives = 170/206 (82.52%), Query Frame = 1


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNN-GEEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VAS QTSSK WLSTGASESD+D+EKN+ G+++YD   N   + QPQGVDP RGWGYRGVH
Sbjct: 25  VASTQTSSKFWLSTGASESDVDIEKNDGGDDDYDAFSN---ELQPQGVDPSRGWGYRGVH 84

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG+VGQAPVQKILR+GR ITIFTVGTGGM+DQRIV+ + LP+
Sbjct: 85  K--------------AIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIVDGRGLPK 144

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNE LGAYAVQ++ KNASVYVEGDIETRVYNDSINGEVKN+PEICVRRDG 
Sbjct: 145 PAQWHRIAVHNELLGAYAVQKLCKNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGM 204

Query: 201 IRLLKPGESASHISLDDLSERRVVSE 226
           + LLKPGESAS++SLDDL ER   +E
Sbjct: 205 LHLLKPGESASNLSLDDLKERLFSNE 213

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: gi|657957797|ref|XP_008370401.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [Malus domestica])

HSP 1 Score: 276.9 bits (707), Expect = 4.0e-71
Identity = 139/200 (69.50%), Postives = 160/200 (80.00%), Query Frame = 1


Query: 25  QTSSKLWLSTGASESDI---DVEKNNGEEEYDELFNDK--IDSQPQGVDPRRGWGYRGVH 84
           Q SSKLW S+  S+SDI   D + N  E+++D+    K  ++ QPQGVDPRRGWGYRGVH
Sbjct: 29  QRSSKLWFSSTPSDSDIGNDDTKNNVAEDDFDDFIGAKKDVNLQPQGVDPRRGWGYRGVH 88

Query: 85  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 144
           K              AIICGKVGQAPVQKILR+GR +TIFTVGTGGMFDQR++ AKDLPR
Sbjct: 89  K--------------AIICGKVGQAPVQKILRNGRTVTIFTVGTGGMFDQRVMGAKDLPR 148

Query: 145 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 204
           PAQWHRIAVHNE LGAYAV+Q+VKNAS+YVEGDIETRVYNDSINGEVK++PEIC+R DGK
Sbjct: 149 PAQWHRIAVHNEALGAYAVKQVVKNASIYVEGDIETRVYNDSINGEVKHIPEICIRHDGK 208

Query: 205 IRLLKPGESASHISLDDLSE 220
           +RL+K GES S ISLDDL E
Sbjct: 209 LRLIKTGESISSISLDDLRE 214

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: gi|657957799|ref|XP_008370402.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X2 [Malus domestica])

HSP 1 Score: 276.9 bits (707), Expect = 4.0e-71
Identity = 139/200 (69.50%), Postives = 160/200 (80.00%), Query Frame = 1


Query: 25  QTSSKLWLSTGASESDI---DVEKNNGEEEYDELFNDK--IDSQPQGVDPRRGWGYRGVH 84
           Q SSKLW S+  S+SDI   D + N  E+++D+    K  ++ QPQGVDPRRGWGYRGVH
Sbjct: 28  QRSSKLWFSSTPSDSDIGNDDTKNNVAEDDFDDFIGAKKDVNLQPQGVDPRRGWGYRGVH 87

Query: 85  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 144
           K              AIICGKVGQAPVQKILR+GR +TIFTVGTGGMFDQR++ AKDLPR
Sbjct: 88  K--------------AIICGKVGQAPVQKILRNGRTVTIFTVGTGGMFDQRVMGAKDLPR 147

Query: 145 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 204
           PAQWHRIAVHNE LGAYAV+Q+VKNAS+YVEGDIETRVYNDSINGEVK++PEIC+R DGK
Sbjct: 148 PAQWHRIAVHNEALGAYAVKQVVKNASIYVEGDIETRVYNDSINGEVKHIPEICIRHDGK 207

Query: 205 IRLLKPGESASHISLDDLSE 220
           +RL+K GES S ISLDDL E
Sbjct: 208 LRLIKTGESISSISLDDLRE 213

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: gi|657992499|ref|XP_008388506.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X2 [Malus domestica])

HSP 1 Score: 274.6 bits (701), Expect = 2.0e-70
Identity = 141/200 (70.50%), Postives = 161/200 (80.50%), Query Frame = 1


Query: 25  QTSSKLWLSTGASESDI--DVEKNNGEEE-YDELFNDK--IDSQPQGVDPRRGWGYRGVH 84
           Q SSKLW S+  S+SDI  D  KNNG E+ +D+    K  ++ QPQGVDPRRGWG+RGVH
Sbjct: 28  QRSSKLWCSSIPSDSDIGNDDTKNNGAEDGFDDFIGAKKDVNLQPQGVDPRRGWGFRGVH 87

Query: 85  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 144
           K              AIICGKVGQAPVQKILR+GR +TIFTVGTGGMFDQR++ AKDLPR
Sbjct: 88  K--------------AIICGKVGQAPVQKILRNGRTVTIFTVGTGGMFDQRVMGAKDLPR 147

Query: 145 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 204
           PAQWHRIAVHNE LGAYAV+Q+VKNAS+YVEGDIETRVYNDSINGEVK++PEIC+R DGK
Sbjct: 148 PAQWHRIAVHNEALGAYAVKQLVKNASIYVEGDIETRVYNDSINGEVKHIPEICIRHDGK 207

Query: 205 IRLLKPGESASHISLDDLSE 220
           +RL+K GES S ISLDDL E
Sbjct: 208 LRLIKTGESVSSISLDDLRE 213

The following BLAST results are available for this feature:

BLAST of Lsi06G000700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SSBP_ARATH	8.0e-64	61.42	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At...	[more]
SSB_RICBR	2.4e-07	25.83	Single-stranded DNA-binding protein OS=Rickettsia bellii (strain RML369-C) GN=ss...	[more]
SSBP_MOUSE	2.4e-07	29.36	Single-stranded DNA-binding protein, mitochondrial OS=Mus musculus GN=Ssbp1 PE=1...	[more]
SSBP_PONAB	3.1e-07	29.36	Single-stranded DNA-binding protein, mitochondrial OS=Pongo abelii GN=SSBP1 PE=2...	[more]
SSBP_HUMAN	6.9e-07	32.22	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1...	[more]

BLAST of Lsi06G000700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVY2_CUCSA	2.6e-77	74.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568540 PE=4 SV=1	[more]
M5WHL0_PRUPE	2.9e-68	70.20	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa017404mg PE=4 S...	[more]
B9STF2_RICCO	2.7e-66	66.50	Single-stranded DNA-binding protein, mitochondrial, putative OS=Ricinus communis...	[more]
D7U9Z5_VITVI	6.0e-66	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01620 PE=4 SV=...	[more]
A0A061FAS7_THECC	2.5e-64	63.73	Mitochondrially targeted single-stranded DNA binding protein isoform 2 OS=Theobr...	[more]

BLAST of Lsi06G000700 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G11060.1	4.5e-65	61.42	mitochondrially targeted single-stranded DNA binding protein	[more]
AT3G18580.1	1.7e-19	29.69	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of Lsi06G000700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435603\|ref\|XP_004135584.1\|	3.7e-77	74.87	PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus]	[more]
gi\|659099379\|ref\|XP_008450570.1\|	4.8e-77	72.82	PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo]	[more]
gi\|657957797\|ref\|XP_008370401.1\|	4.0e-71	69.50	PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [M...	[more]
gi\|657957799\|ref\|XP_008370402.1\|	4.0e-71	69.50	PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X2 [M...	[more]
gi\|657992499\|ref\|XP_008388506.1\|	2.0e-70	70.50	PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X2 [M...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

Vocabulary: **Molecular Function**
Term	Definition
GO:0003697	single-stranded DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR011344	ssDNA-bd
IPR000424	Primosome_PriB/ssb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003697	single-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000700.1	Lsi06G000700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 95..195 score: 3.4
IPR000424	Primosome PriB/single-strand DNA-binding	PROFILE	PS50935	SSB	coord: 91..201 score: 11
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 14..231 score: 2.0E
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 90..203 score: 3.2
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 90..196 score: 4.11
None	No IPR available	PANTHER	PTHR10302:SF6	SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL	coord: 14..231 score: 2.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G000700	Csa1G568540	Cucumber (Chinese Long) v2	culsiB058
Lsi06G000700	CSPI01G26030	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G000700	Cucsa.051260	Cucumber (Gy14) v1	cgylsiB033
Lsi06G000700	CmaCh10G011460	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G000700	CmoCh10G012300	Cucurbita moschata (Rifu)	cmolsiB062
Lsi06G000700	Cla005174	Watermelon (97103) v1	lsiwmB396
Lsi06G000700	MELO3C015270	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G000700	ClCG03G017590	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G000700	MELO3C015270.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G000700	Cla97C03G067970	Watermelon (97103) v2	lsiwmbB365
Lsi06G000700	Bhi02G001799	Wax gourd	lsiwgoB522
Lsi06G000700	Cp4.1LG18g00290	Cucurbita pepo (Zucchini)	cpelsiB302
Lsi06G000700	CsGy1G025310	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G000700	Carg27007	Silver-seed gourd	carlsiB533
Lsi06G000700	CsaV3_1G038450	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G000700	Wild cucumber (PI 183967)	cpilsiB134
Lsi06G000700	Cucumber (Chinese Long) v2	culsiB136
Lsi06G000700	Melon (DHL92) v3.5.1	lsimeB416
Lsi06G000700	Watermelon (Charleston Gray)	lsiwcgB359
Lsi06G000700	Watermelon (Charleston Gray)	lsiwcgB362
Lsi06G000700	Watermelon (97103) v1	lsiwmB392
Lsi06G000700	Watermelon (97103) v1	lsiwmB409
Lsi06G000700	Bottle gourd (USVL1VR-Ls)	lsilsiB060
Lsi06G000700	Cucumber (Gy14) v1	cgylsiB101
Lsi06G000700	Cucurbita maxima (Rimu)	cmalsiB070
Lsi06G000700	Cucurbita maxima (Rimu)	cmalsiB133
Lsi06G000700	Cucurbita maxima (Rimu)	cmalsiB178
Lsi06G000700	Cucurbita maxima (Rimu)	cmalsiB734
Lsi06G000700	Cucurbita moschata (Rifu)	cmolsiB122
Lsi06G000700	Cucurbita moschata (Rifu)	cmolsiB136
Lsi06G000700	Cucurbita moschata (Rifu)	cmolsiB168
Lsi06G000700	Cucurbita moschata (Rifu)	cmolsiB723
Lsi06G000700	Cucurbita pepo (Zucchini)	cpelsiB095
Lsi06G000700	Cucurbita pepo (Zucchini)	cpelsiB570
Lsi06G000700	Cucurbita pepo (Zucchini)	cpelsiB682