CmaCh10G011460 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G011460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Single-stranded DNA-binding protein
Location	Cma_Chr10 : 8106458 .. 8112293 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAGGCCTAAAACCCTCCTTTTACCCTCATCGAATCGACACCCTTCCAGTTTTGCTCTCGCTCGATCAACATGAATGCAGTCGCAATGAGATTCCTCAAGCATTTCAGGATTTCTTCTTCATTTGGTACTCTCTCTCTCTATCTCTCTCTTGTTTGATTGATTAAGGCGTATGTTCTTTATGTTCTACGAGCTGAGGGAATTTCCCAAGACGTTTTCTATGGTTTAGTGTCGAAAAGGTCGTTTGATTTTTGAAAGACGTTTTCCGAATTTTTGCAATTTGATCTTCGGAGTGGATTTTTATCAAATATACGTGGTGAGCGAACTTGTTTTTATTTTAATTTGAGAGGCTGGATGAAGAACTTGACTAATCGTATGTATGAACTTGACTAATCGTATGTATTGGGTGTCTATGTGTAATGTTTTTGCTGGAGTGGTGGCTTGATTACTTATTGAACGTTTGATTGTAGTGGCAAGTAGGCAAACGAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGGAAGTGGCATTGATGTTGAGAAGAACAATGGAGAAGAAGAAGAATATGATGATTTTTTTAATGATAAAATTGAATTACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATTTCGTGGCGTACATAAGGTATCTGATCTTTGTCTACTGATGTGTTCCGTTTCTAAAAGTTGGGATTTGAAATCCGGATGCTGGGAATTTCACCCAAACAGTGGTGTTTAGTATCTCCAATCTGTTATTGGGATGATTCTTCATGTTTTTGGTGATTGTTTTACTTTTATCAAATTTATAAACTATCCAAAATGAAAGAACAGCTTCTATATTTTTGGTTTTTAGAAAATATGTCTAGTGCCTTGCCTTCTTTTGTTGATGAGTGTTATAGTAAATCTGATTCGAAAGAGAAGTCATTTGTGTACTTCCGTATTATAGAAAGCATAAGAATGGGGTATAGCGAGTAAGTGAGAACCGTTGTGGGCAAAGAAAGAACGAGAACTTATGTGGCTAGAGCTTGAACTTTAAAGTATGATGTAAGTGGTTTGGAACATTATATATATGTGTGTTATGAAACTCTTGGGATTTGATCTAACAAACATCTTAAAGGACAAGACCTTTAGATCTAAATTATCCAAGAACCCCAAAAATGATAAGGAATCAACCCAAGGGAAAGATTTGGAACGGATTACCTTGATGATCAAGATCAAGAATAAAGAGAACTTGTTTCTGAACACGTGATTTGAATCACTCCACAAGATAGCTTGATCAAGACTACTTGACTGACTCTAGCATGCAAATCTAAAGACAAGAAATGCAAAGGAACAAACTCATGCCTCAAGAAGCATAATATGCAACTTTCATTATAATATCCAAAGATTTTTTTTATTTTTTTATTTTTATTTTATTAGAGACAATTTCATTGATGAGTGAAATTTACAAGAGGGATGTATAATCCACGATGTTTACAAAAGACCTTCCCAATTTGCAATGAGGGAGGTATAACTATCGGAAGTAAAAATATTAGACAGTTTACACCAAGATATAGCTTGGTAAACAATATTGTCGAAAAGTTTTGTGTAGGTCTGTGTCGTTTCTGCAAATATTCTCTGATTTCTTTCTTTCCACAGATTCCAAAAGAAAGCCATGATGAGGTTTTTCCATAATAGGGCTTTTGCGTTCTTGAAAGGGTTGTACGTTAAGGCCATATCCAAAAAATCCTTTACCTCCCTAGAAAATGTGAGATGCCATCCGAATATATTAAGAATTGTTGTCCAGAAATTTTGAGTGTATGTGCATTGCATAAACAAGTGACTTTGTGATTCGTTTGCTTTCTTGCATAGTGGACACCAATTTGGAGAGAGAGTGATGTAAGACATTCTTTTTTGAAGATTTTCACTTGTGCGGATGACTTTATGCGCTATTTCCCAAATGAAGAATTTCACCTTTTTAGGTTGATGTCCTTTCCATATTGTCTTTGCTAGCGTGGGATTAATTGCTTCTACTTTTTCCCCATGTCCATCATCAAAGATTTTGTAGAAAAGACCCCGTCAGCGCTGGGGAGCCAAGTTAGCGAGTCTTCTTTGTTTGACAATACCACAGGGGCAAGGTCAAGGCTTAATTCGGCCCACTATGTTGCTTCATTATCCTTTAGATTCCTACCAAGCTTCAAGTCCCAAAATTTGTTGACAACATTCCACGTTTCTTTAATCGTGGCTTTTTTGTTGTGAGAAAGCCTGTACAAAAGTGGATACTTCAAAGCTAGCGTGGTGTTTTCAATCCATGGGTTGGTCCAAAATGATGTGCTTCCCCCATTCCCCACCTTATGGCAAGTTTGGTGGGTGATGAGATTTTGATGTTTTTTAAGTACTTCCAAGACCCTTTTGTAGAAGATGGAGGGAGGTGATCTTTGTTTGATGTAGGAGTATATTTAGCCTTTATAAGATTTCGCCATAAGGCCTTTTCTTCATGATGATATCTCCATATCCATTTGGCGAGGAGAGCTGTGTTCTTCCTTATCGAGAGAAGACCGAGACCTCCCTTTTCTGTTGGGAGGTTTATAATATTCCAACAAACAAGGTGTGCACTATCTTTCCATAAGTAATTTCTGAAAAACCTTTCTATATCCATGGCCACTTTTTGTGGCATTTCAAATAGAGACATATAGTAGGTAGGGAGGTTGGATAATGTGCCCTGTATTAGGGTAAGTTTTCGCCTTTTGAAGTATAACGTGATGACCATGTTGACAACCTTCTGCCTTTTGAAGTATTGTACCAGGTTGGATAATGTGGCTTGTATTATAAGGTTTATTTTCAAGCCTATAAATAAGCATTCATGTTATTTATGTTGTTGTATTAGTATAATATCCAAAAATCTTGATACTAAAGCAACAATATCCAAAAATCTTGATACTAAAGCAACCACATAAATAACATGTATGCCTATTTATAGCCTTGAAAATAAACCTTATAAACCTATGGTTAGTTCATTGAAAGGTTGTAACTTTTATGGCCATCAAATACCATAATGGCCACTATCTAAAAGTGACTTATAATCTTAAAGATAATTTTCTAAAACTTAAAAATATAATAAAGTACTTAAATCTTTGTGGCATGATTAAGACATCTTATTTCGTATCAGTATGTGTGATGTATTGTAAGGTTCCAGGTGAACAGGTAGGATGAGTAATTTCTTAGATAGTTCGGAAAGTCTTAAACGAATCACTTGTAAGCGAGACTTGAGAGGTATGATGGGCAACAATTAGAGTGAGTTTGGGAGAAACCCAGAGCTCTGTAACTTTGGTGGTTCTGGAATCTGTCGCTGATTGTGAAAGATTTACTCTCACATGATAATTGGATTCATATCAGCTATTTATAGATAGATTATACAACATAACTAACATTACCGGGAAGCCTAACTAATCAGCTAAATAGTTAACTAATTTTCTTCTCCTTTAGTGTGTCTGTTCCCATCTTTTGTGGAATATACCTTTCTCTGTTTGTTGTCCAAAAGGAAAAAAAAACAAAAAAAACGCATCTGAATATATCAGACAATAGTTACCTCTCTTTAGCATTTGATTAAATATCTTCCTTGGAGGGTTACATCGCAATCTTAGGTATAAGTCCCACCCCAACTAAGCAGAAGAAATTATATTTGATTCAGGTTATTAGATAATGTGAAAACGAGGTAAAAACCAGGAAAATCATGTCTCTTTAAATTTTTTATCTTCTGCAGAGAAATAAGAGTTCAGTTATCCCCAATATAATGTTTATTCTGTTTAAAAATGTAATCAAATGTTTGCAGGCAATAATTTGTGGAAGGATTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGCACAATAACAATCTTTACAGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCGCTTGGTGCTTATGCAGTTCAACAACTTGTTAAAAAGTATGATCTGAACTTCTCATAAAACTAGTTTGTTTGTACAATTTCACTGATTCTTGGTTAACTATATCAGCGCATCGGTTTATGTTGAGGGCGACATTGAAACCAGAGTCTACAATGACAGCATCAATGGTGAAGTCAAAAATGTCCCAGAAATATGTGTTCGACGGGATGGTATTACAATACTTACTATTATCTTTTGATTTCCTTTTCAATGTTTTTGTAATAGCCCAAGCGCATCGCTAGCAGATATTGTCCTCTTTGAGCTTTCCCTTTCGGGCCTCTCCTCAAGGTTTTTAAAACGTGTCTTCTAGGGAGAGCTTCCCACACTTTTATAAAGAATGCTTCATTCTCCTCCCCAATCAATGTGGGATCTCACAATCCATTCCCCTTTGGAGCCCAGCGTCCTAGCTGGCACTCATCCCCTTCTCCAATCGATGTGGGCCCCCCCAATCCATCCTCTTCGGGGCCCAGCATCCTTGCTGGCACACCGCTTCGTGTTGACCTCCTTTCGAGGCTCAGCCTCCTTGCTAACATATCGCTCGGGGTCTGGCTCTGATACCATTTCTCGATTTGTGCATGTCATCCTTGTGCAGGGGCCATGCTAATCTTCTCTGTATCGTTCCAATTTTATCGGATGTCCTTTTTTTTTGTGAGGTCCCACATCGGTTGGAGAAAAGAATGAAACATTTTTTAAAATAGTGGAAACATCTGCTATTCCTAGCAGACGTGTTCTAAGAAGACAATATTTACTAGCGGTGGGCTTGGGCTATTACAGTATCTTAGATTAATAAGAGTCATCATCTTATAACTTCTCTGCATCTACATGATTTTTTCGTAAAGGTCATTTTAAGCATCTAGAAGGGCGTCCTTGAATGTTCATAATCATAAAGATTAAATTATCATATTAGTTCATATTGTTTGTACTTATGTTTAAAGCCATAGGAACAAATTGAAATTAAAACTACAAATTATGAAGACAAAAAGGGTTAATCTATCCTAATCTTTATATGGTATGAACAGAAAATTATTCACGACCATGAACAGCTAATACTTTTATTAAATGTTAGTTCAAGTTTGATCTGTGAAAGACCTTATTGGGGACCCTTTTAACTGCCATGCTTCCTTTTTTGCAGGGAAGATTCGGCTTTTAAAGGCCGGAGAAAGTGCCAGCAATATTTCTCTGGACGATTTAAGTGAGCTTTCCAGATAACATTCTGTATATGTGATTACTAAACACGGAACAATGCATTGCATGACAACTTTTTTCATTCTTTCTCGCAATCTGATGTGTTTTTTTTTTTTTTTTTTGTTTGTTTTGTAATTGACAGAAGAAGGGTTGTTTCAGAACGAGACATAACATGTTGCCAAAAACCTCAATCAGTTGGAAGTTTGTGTAGCTTTGTATATTTGGCACGAGAAAGAGAGAGAGACGGTATTACTTTCCATTCAAAGATTAGTACTGAAACCACCAATGCCTCATAATCTCTTCTTGCAATTGTTTAGTTTATTAGCGTTGTAGCATTTTGTTCTTCAAGGCTCTTAAAGCCAGTTTTGTGTTAGATTGGCCAGGGATATTATTATAGGCTCACAAGACTTGTCACTGCTGATGATGCCTTTATTCTTGTTTCAATGCATTTCTCCTAACAAGTGATGGCATCATAGTTTTGAAATCCACAGATTAGACAAAGTTCAATAGAAGACTGTTAATTGTTAATGCCTTGTTTGATAATTGTTAATGCTTCGTTTGATAATTATAGAACGCTGATGCTGTTGAGGTGATAGCAATAATAAGCGGGGAAGTTGAAGCAAGA

mRNA sequence

CGAAGGCCTAAAACCCTCCTTTTACCCTCATCGAATCGACACCCTTCCAGTTTTGCTCTCGCTCGATCAACATGAATGCAGTCGCAATGAGATTCCTCAAGCATTTCAGGATTTCTTCTTCATTTGTGGCAAGTAGGCAAACGAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGGAAGTGGCATTGATGTTGAGAAGAACAATGGAGAAGAAGAAGAATATGATGATTTTTTTAATGATAAAATTGAATTACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATTTCGTGGCGTACATAAGGCAATAATTTGTGGAAGGATTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGCACAATAACAATCTTTACAGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCGCTTGGTGCTTATGCAGTTCAACAACTTGTTAAAAACGCATCGGTTTATGTTGAGGGCGACATTGAAACCAGAGTCTACAATGACAGCATCAATGGTGAAGTCAAAAATGTCCCAGAAATATGTGTTCGACGGGATGGGAAGATTCGGCTTTTAAAGGCCGGAGAAAGTGCCAGCAATATTTCTCTGGACGATTTAAAAGAAGGGTTGTTTCAGAACGAGACATAACATGTTGCCAAAAACCTCAATCAGTTGGAAGTTTGTGTAGCTTTGTATATTTGGCACGAGAAAGAGAGAGAGACGAACGCTGATGCTGTTGAGGTGATAGCAATAATAAGCGGGGAAGTTGAAGCAAGA

Coding sequence (CDS)

ATGAATGCAGTCGCAATGAGATTCCTCAAGCATTTCAGGATTTCTTCTTCATTTGTGGCAAGTAGGCAAACGAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGGAAGTGGCATTGATGTTGAGAAGAACAATGGAGAAGAAGAAGAATATGATGATTTTTTTAATGATAAAATTGAATTACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATTTCGTGGCGTACATAAGGCAATAATTTGTGGAAGGATTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGCACAATAACAATCTTTACAGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCGCTTGGTGCTTATGCAGTTCAACAACTTGTTAAAAACGCATCGGTTTATGTTGAGGGCGACATTGAAACCAGAGTCTACAATGACAGCATCAATGGTGAAGTCAAAAATGTCCCAGAAATATGTGTTCGACGGGATGGGAAGATTCGGCTTTTAAAGGCCGGAGAAAGTGCCAGCAATATTTCTCTGGACGATTTAAAAGAAGGGTTGTTTCAGAACGAGACATAA

Protein sequence

MNAVAMRFLKHFRISSSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDFFNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLLKAGESASNISLDDLKEGLFQNET

Homology

[Close]

BLAST of CmaCh10G011460 vs. Swiss-Prot
Match: SSBP_ARATH (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.0e-73
Identity = 137/208 (65.87%), Postives = 165/208 (79.33%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRISS--SFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDFFNDK 60
           MN++A+R  K  R SS      S +  SK W STG    G+        EE++++   ++
Sbjct: 1   MNSLAIRVSKVLRSSSISPLAISAERGSKSWFSTGPIDEGV--------EEDFEENVTER 60

Query: 61  IELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVE 120
            ELQP GVDPR+GWGFRGVH+AIICG++GQAP+QKILRNGRT+TIFTVGTGGMFDQR+V 
Sbjct: 61  PELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVG 120

Query: 121 AKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEIC 180
           A + PKPAQWHRIAVHNE LG+YAVQ+L KN+SVYVEGDIETRVYNDSI+ EVK++PEIC
Sbjct: 121 ATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEIC 180

Query: 181 VRRDGKIRLLKAGESASNISLDDLKEGL 207
           VRRDGKIR++K GES S IS D+LKEGL
Sbjct: 181 VRRDGKIRMIKYGESISKISFDELKEGL 200

[Close]

BLAST of CmaCh10G011460 vs. Swiss-Prot
Match: SSB_WIGBR (Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis GN=ssb PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-10
Identity = 37/115 (32.17%), Postives = 67/115 (58.26%), Query Frame = 1


Query: 75  RGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMF-DQRIVEAKDLPKPAQWHRIAV 134
           RG++K I+ G +GQ P  + + NG  IT  ++ T   + D+   E+K+     +WHR+ +
Sbjct: 4   RGINKVILIGNLGQDPEVRYIPNGNAITNLSLATSENWRDKNTGESKE---KTEWHRVIL 63

Query: 135 HNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLL 189
             + L   A + L K + VY+EG+++TR + D  NG+ + + EI V  +G +++L
Sbjct: 64  FGK-LAEVAGEYLKKGSQVYIEGNLQTRKWQDQ-NGQDRYITEIVVGINGCMQML 113

[Close]

BLAST of CmaCh10G011460 vs. Swiss-Prot
Match: SSB7_ECOLX (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 6.2e-10
Identity = 36/114 (31.58%), Postives = 62/114 (54.39%), Query Frame = 1


Query: 75  RGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVH 134
           RG++K I+ GR+G+ P  + + NG  +    V T   +  R  +  ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESW--RDKQTGEIREQTEWHRVVLF 63

Query: 135 NEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLL 189
            + L   A + L K A VY+EG + TR + D  NG  + V EI V+  G +++L
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQML 112

[Close]

BLAST of CmaCh10G011460 vs. Swiss-Prot
Match: SSBR_ECOLX (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb PE=3 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 8.1e-10
Identity = 35/114 (30.70%), Postives = 62/114 (54.39%), Query Frame = 1


Query: 75  RGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVH 134
           RG++K I+ GR+G  P  + + NG  +    V T   +  R  +  ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESW--RDKQTGEMREQTEWHRVVLF 63

Query: 135 NEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLL 189
            + L   A + L K A VY+EG + TR ++D  NG  + + EI V+  G +++L
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQML 112

[Close]

BLAST of CmaCh10G011460 vs. Swiss-Prot
Match: SSBP_ECOLX (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb PE=3 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 8.1e-10
Identity = 35/114 (30.70%), Postives = 62/114 (54.39%), Query Frame = 1


Query: 75  RGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPKPAQWHRIAVH 134
           RG++K I+ GR+G  P  + + NG  +    V T   +  R  +  ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESW--RDKQTGEMREQTEWHRVVLF 63

Query: 135 NEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLL 189
            + L   A + L K A VY+EG + TR ++D  NG  + + EI V+  G +++L
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQML 112

[Close]

BLAST of CmaCh10G011460 vs. TrEMBL
Match: A0A0A0LVY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568540 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.7e-92
Identity = 174/217 (80.18%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRI------SSSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60
           MN+VAMRFL  FR       +SSFVAS QTSSK WLSTGAS    DVEKN+GEE++YD F
Sbjct: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
            N   ELQPQGVDP RGWG+RGVHKAIICGR+GQAPVQKILRNGRTITIFTVGTGGM+DQ
Sbjct: 61  SN---ELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180
           RI + +DLPKPAQWHRIAVHNE LGAYAVQ+L +NASVYVEGDIETRVYNDSINGEVKN+
Sbjct: 121 RIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNI 180

Query: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLFQNET 212
           PEICVRRDG +RLLK GESASNISLDDLKEGLF N+T
Sbjct: 181 PEICVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT 214

[Close]

BLAST of CmaCh10G011460 vs. TrEMBL
Match: B9STF2_RICCO (Single-stranded DNA-binding protein, mitochondrial, putative OS=Ricinus communis GN=RCOM_1318760 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.6e-79
Identity = 151/213 (70.89%), Postives = 176/213 (82.63%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRISS------SFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60
           M+++A++F K  R+SS      S V   Q S K   ST +     DV KNN  +EE+DDF
Sbjct: 1   MSSLAVKFAKFLRVSSPAATTSSPVVGLQRSFKTLYSTESFSGENDVGKNNELDEEFDDF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
             +K ELQ QGVDPR+GWGFRGVHKAIICG++GQAPVQKILRNGRT+TIFTVGTGGMFDQ
Sbjct: 61  LGEKPELQIQGVDPRKGWGFRGVHKAIICGKVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180
           RIV AKDLPKPAQWHRIAVHNE LGAYAVQQL KN+SVYVEG+IETRVYNDSI+GEVKN+
Sbjct: 121 RIVGAKDLPKPAQWHRIAVHNETLGAYAVQQLAKNSSVYVEGEIETRVYNDSISGEVKNI 180

Query: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLF 208
           PEIC+RRDGKIRL+ +G++ S+IS DDL+EGLF
Sbjct: 181 PEICIRRDGKIRLVTSGKNVSDISFDDLREGLF 213

[Close]

BLAST of CmaCh10G011460 vs. TrEMBL
Match: D7U9Z5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01620 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.7e-76
Identity = 151/202 (74.75%), Postives = 169/202 (83.66%), Query Frame = 1


Query: 7   RFLKHFRISSSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYD-DFFNDKIELQPQG 66
           RFL+  R ++S V   Q +SK W ST  S  G D +  NGE EE D D   +K  LQ QG
Sbjct: 9   RFLR-VRPTTSLVVGVQKNSKAWYST-VSFDGGDGDGKNGEGEESDNDLVTEKPNLQLQG 68

Query: 67  VDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPKP 126
           VDPR+GWGFRGVHKAIICG++GQAPVQKILRNGRT+TIFTVGTGGMFDQRI   KDLPKP
Sbjct: 69  VDPRKGWGFRGVHKAIICGKVGQAPVQKILRNGRTVTIFTVGTGGMFDQRI-GGKDLPKP 128

Query: 127 AQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKI 186
           AQWHRIAVHNEPLGAYAVQQLVKN+SVYVEGDIE RVYNDSINGEVK+VPEIC+RRDG+I
Sbjct: 129 AQWHRIAVHNEPLGAYAVQQLVKNSSVYVEGDIEVRVYNDSINGEVKHVPEICIRRDGRI 188

Query: 187 RLLKAGESASNISLDDLKEGLF 208
           RL+K GES SNIS+D+L+EGLF
Sbjct: 189 RLIKTGESISNISVDELREGLF 207

[Close]

BLAST of CmaCh10G011460 vs. TrEMBL
Match: I3SK50_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-75
Identity = 148/220 (67.27%), Postives = 172/220 (78.18%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRISSSF------VASRQTSSKLWLSTGAS-GSGIDVEKNNGE------ 60
           MN++A+R  KH RI+S+       V  R   +  W ST  S G G    + NG       
Sbjct: 1   MNSIAVRVAKHLRITSNVGVAGGGVWRRHGPAASWYSTFLSEGEGDQPSRGNGGLNNEEL 60

Query: 61  EEEYDDFFNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVG 120
           +EE DDF   K ELQ QGVDP+RGWGFRGVHKAIICG++GQAPVQKILRNG+ +TIFTVG
Sbjct: 61  DEEIDDFLGGKPELQLQGVDPKRGWGFRGVHKAIICGKVGQAPVQKILRNGKNVTIFTVG 120

Query: 121 TGGMFDQRIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSI 180
           TGGM DQRIV A+D+PKP QWHRIAVHN+ LGAYAVQQ+ KN+SVYVEGDIETRVYNDSI
Sbjct: 121 TGGMSDQRIVGARDMPKPPQWHRIAVHNDVLGAYAVQQICKNSSVYVEGDIETRVYNDSI 180

Query: 181 NGEVKNVPEICVRRDGKIRLLKAGESASNISLDDLKEGLF 208
           NGEVK++PEICVRRDGKIRL+K+GESA  ISLD+L+EGLF
Sbjct: 181 NGEVKSIPEICVRRDGKIRLIKSGESADKISLDELREGLF 220

[Close]

BLAST of CmaCh10G011460 vs. TrEMBL
Match: V7BK76_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G199200g PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-74
Identity = 146/217 (67.28%), Postives = 171/217 (78.80%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRIS---SSFVASRQTSSKLWLSTGASGSGIDVEKN-NGE------EEE 60
           MN+VA+R  KH R+S   SS +     S  LW ST  SG   D+  + NGE      +E 
Sbjct: 1   MNSVAVRLAKHLRVSALTSSSLGGVSRSGTLWYSTSPSGGVDDLPSHHNGEPKNEELDEG 60

Query: 61  YDDFFNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGG 120
           +DDF   + ELQ QGVDP+RGWGFRGVHKAIICG++GQ+PVQKILRNG+ +TIFTVGTGG
Sbjct: 61  FDDFLGGRPELQLQGVDPKRGWGFRGVHKAIICGKVGQSPVQKILRNGKNVTIFTVGTGG 120

Query: 121 MFDQRIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGE 180
           MFDQRI   KDLPKPAQWHRIAVHN+ LGAYAVQ+L KN SVY+EGDIETRVYNDSINGE
Sbjct: 121 MFDQRI-GPKDLPKPAQWHRIAVHNDMLGAYAVQKLFKNCSVYIEGDIETRVYNDSINGE 180

Query: 181 VKNVPEICVRRDGKIRLLKAGESASNISLDDLKEGLF 208
           VK++PEICVRRDG+IRL+K+GES    SLD+L+EGLF
Sbjct: 181 VKSIPEICVRRDGRIRLIKSGESIDKTSLDELREGLF 216

[Close]

BLAST of CmaCh10G011460 vs. TAIR10
Match: AT4G11060.1 (AT4G11060.1 mitochondrially targeted single-stranded DNA binding protein)

HSP 1 Score: 277.7 bits (709), Expect = 5.9e-75
Identity = 137/208 (65.87%), Postives = 165/208 (79.33%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRISS--SFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDFFNDK 60
           MN++A+R  K  R SS      S +  SK W STG    G+        EE++++   ++
Sbjct: 1   MNSLAIRVSKVLRSSSISPLAISAERGSKSWFSTGPIDEGV--------EEDFEENVTER 60

Query: 61  IELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVE 120
            ELQP GVDPR+GWGFRGVH+AIICG++GQAP+QKILRNGRT+TIFTVGTGGMFDQR+V 
Sbjct: 61  PELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVG 120

Query: 121 AKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEIC 180
           A + PKPAQWHRIAVHNE LG+YAVQ+L KN+SVYVEGDIETRVYNDSI+ EVK++PEIC
Sbjct: 121 ATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEIC 180

Query: 181 VRRDGKIRLLKAGESASNISLDDLKEGL 207
           VRRDGKIR++K GES S IS D+LKEGL
Sbjct: 181 VRRDGKIRMIKYGESISKISFDELKEGL 200

[Close]

BLAST of CmaCh10G011460 vs. TAIR10
Match: AT3G18580.1 (AT3G18580.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 59/200 (29.50%), Postives = 105/200 (52.50%), Query Frame = 1


Query: 15  SSSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDFFNDKIELQPQGVDPRRGWGF 74
           +S    SR+    L  +   S + +    NN    E  DF   +  ++P+  DP   +  
Sbjct: 3   NSMATLSRRLYRSLLSNPRISQASMSFCTNNITSPEDSDFDELESPIEPKASDPVSRFSG 62

Query: 75  R---------------GVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEA 134
                           G+ KAI+ G++GQ P+QK L++GRT+T+F+VGTGG+ + R    
Sbjct: 63  EERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRRPLI 122

Query: 135 KDLPKP------AQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKN 193
            + P+        QWHR++V+ E L    ++ +     +Y+EG++ET+++ D + G V+ 
Sbjct: 123 NEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRR 182

[Close]

BLAST of CmaCh10G011460 vs. NCBI nr
Match: gi|449435603|ref|XP_004135584.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 3.8e-92
Identity = 174/217 (80.18%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRI------SSSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60
           MN+VAMRFL  FR       +SSFVAS QTSSK WLSTGAS    DVEKN+GEE++YD F
Sbjct: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
            N   ELQPQGVDP RGWG+RGVHKAIICGR+GQAPVQKILRNGRTITIFTVGTGGM+DQ
Sbjct: 61  SN---ELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180
           RI + +DLPKPAQWHRIAVHNE LGAYAVQ+L +NASVYVEGDIETRVYNDSINGEVKN+
Sbjct: 121 RIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNI 180

Query: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLFQNET 212
           PEICVRRDG +RLLK GESASNISLDDLKEGLF N+T
Sbjct: 181 PEICVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT 214

[Close]

BLAST of CmaCh10G011460 vs. NCBI nr
Match: gi|659099379|ref|XP_008450570.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo])

HSP 1 Score: 338.2 bits (866), Expect = 1.0e-89
Identity = 169/217 (77.88%), Postives = 187/217 (86.18%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRI------SSSFVASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDF 60
           MN+V +R L  FRI      +SSFVAS QTSSK WLSTGAS S +D+EKN+G +++YD F
Sbjct: 1   MNSVTVRLLNRFRIPSSNSPTSSFVASTQTSSKFWLSTGASESDVDIEKNDGGDDDYDAF 60

Query: 61  FNDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQ 120
            N   ELQPQGVDP RGWG+RGVHKAIICGR+GQAPVQKILRNGRTITIFTVGTGGM+DQ
Sbjct: 61  SN---ELQPQGVDPSRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120

Query: 121 RIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNV 180
           RIV+ + LPKPAQWHRIAVHNE LGAYAVQ+L KNASVYVEGDIETRVYNDSINGEVKN+
Sbjct: 121 RIVDGRGLPKPAQWHRIAVHNELLGAYAVQKLCKNASVYVEGDIETRVYNDSINGEVKNI 180

Query: 181 PEICVRRDGKIRLLKAGESASNISLDDLKEGLFQNET 212
           PEICVRRDG + LLK GESASN+SLDDLKE LF NET
Sbjct: 181 PEICVRRDGMLHLLKPGESASNLSLDDLKERLFSNET 214

[Close]

BLAST of CmaCh10G011460 vs. NCBI nr
Match: gi|657992497|ref|XP_008388504.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [Malus domestica])

HSP 1 Score: 305.8 bits (782), Expect = 5.7e-80
Identity = 154/216 (71.30%), Postives = 176/216 (81.48%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRIS------SSFVASRQTSSKLWLSTGASGSGI--DVEKNNGEEEEYD 60
           M++VA RF K  R+S      SS     Q SSKLW S+  S S I  D  KNNG E+ +D
Sbjct: 1   MSSVAARFAKFMRVSVPSSPTSSLAVGVQRSSKLWCSSIPSDSDIGNDDTKNNGAEDGFD 60

Query: 61  DFF--NDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGG 120
           DF      + LQPQGVDPRRGWGFRGVHKAIICG++GQAPVQKILRNGRT+TIFTVGTGG
Sbjct: 61  DFIGAKKDVNLQPQGVDPRRGWGFRGVHKAIICGKVGQAPVQKILRNGRTVTIFTVGTGG 120

Query: 121 MFDQRIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGE 180
           MFDQR++ AKDLP+PAQWHRIAVHNE LGAYAV+QLVKNAS+YVEGDIETRVYNDSINGE
Sbjct: 121 MFDQRVMGAKDLPRPAQWHRIAVHNEALGAYAVKQLVKNASIYVEGDIETRVYNDSINGE 180

Query: 181 VKNVPEICVRRDGKIRLLKAGESASNISLDDLKEGL 207
           VK++PEIC+R DGK+RL+K GES S+ISLDDL+E L
Sbjct: 181 VKHIPEICIRHDGKLRLIKTGESVSSISLDDLREDL 216

[Close]

BLAST of CmaCh10G011460 vs. NCBI nr
Match: gi|657957797|ref|XP_008370401.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [Malus domestica])

HSP 1 Score: 305.4 bits (781), Expect = 7.5e-80
Identity = 152/216 (70.37%), Postives = 178/216 (82.41%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRIS------SSFVASRQTSSKLWLSTGASGSGI--DVEKNNGEEEEYD 60
           M++VA RF+K  R+S      SSF    Q SSKLW S+  S S I  D  KNN  E+++D
Sbjct: 1   MSSVAARFVKFMRVSVPSSPTSSFAVGVQRSSKLWFSSTPSDSDIGNDDTKNNVAEDDFD 60

Query: 61  DFF--NDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGG 120
           DF      + LQPQGVDPRRGWG+RGVHKAIICG++GQAPVQKILRNGRT+TIFTVGTGG
Sbjct: 61  DFIGAKKDVNLQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRNGRTVTIFTVGTGG 120

Query: 121 MFDQRIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGE 180
           MFDQR++ AKDLP+PAQWHRIAVHNE LGAYAV+Q+VKNAS+YVEGDIETRVYNDSINGE
Sbjct: 121 MFDQRVMGAKDLPRPAQWHRIAVHNEALGAYAVKQVVKNASIYVEGDIETRVYNDSINGE 180

Query: 181 VKNVPEICVRRDGKIRLLKAGESASNISLDDLKEGL 207
           VK++PEIC+R DGK+RL+K GES S+ISLDDL+E L
Sbjct: 181 VKHIPEICIRHDGKLRLIKTGESISSISLDDLREDL 216

[Close]

BLAST of CmaCh10G011460 vs. NCBI nr
Match: gi|657992499|ref|XP_008388506.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X2 [Malus domestica])

HSP 1 Score: 304.7 bits (779), Expect = 1.3e-79
Identity = 153/215 (71.16%), Postives = 177/215 (82.33%), Query Frame = 1


Query: 1   MNAVAMRFLKHFRIS-----SSFVASRQTSSKLWLSTGASGSGI--DVEKNNGEEEEYDD 60
           M++VA RF K  R+S     +S +   Q SSKLW S+  S S I  D  KNNG E+ +DD
Sbjct: 1   MSSVAARFAKFMRVSVPSSPTSSLVGVQRSSKLWCSSIPSDSDIGNDDTKNNGAEDGFDD 60

Query: 61  FF--NDKIELQPQGVDPRRGWGFRGVHKAIICGRIGQAPVQKILRNGRTITIFTVGTGGM 120
           F      + LQPQGVDPRRGWGFRGVHKAIICG++GQAPVQKILRNGRT+TIFTVGTGGM
Sbjct: 61  FIGAKKDVNLQPQGVDPRRGWGFRGVHKAIICGKVGQAPVQKILRNGRTVTIFTVGTGGM 120

Query: 121 FDQRIVEAKDLPKPAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEV 180
           FDQR++ AKDLP+PAQWHRIAVHNE LGAYAV+QLVKNAS+YVEGDIETRVYNDSINGEV
Sbjct: 121 FDQRVMGAKDLPRPAQWHRIAVHNEALGAYAVKQLVKNASIYVEGDIETRVYNDSINGEV 180

Query: 181 KNVPEICVRRDGKIRLLKAGESASNISLDDLKEGL 207
           K++PEIC+R DGK+RL+K GES S+ISLDDL+E L
Sbjct: 181 KHIPEICIRHDGKLRLIKTGESVSSISLDDLREDL 215

The following BLAST results are available for this feature:

BLAST of CmaCh10G011460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SSBP_ARATH	1.0e-73	65.87	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At...	[more]
SSB_WIGBR	4.8e-10	32.17	Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis GN...	[more]
SSB7_ECOLX	6.2e-10	31.58	Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb P...	[more]
SSBR_ECOLX	8.1e-10	30.70	Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb P...	[more]
SSBP_ECOLX	8.1e-10	30.70	Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb P...	[more]

BLAST of CmaCh10G011460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVY2_CUCSA	2.7e-92	80.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568540 PE=4 SV=1	[more]
B9STF2_RICCO	2.6e-79	70.89	Single-stranded DNA-binding protein, mitochondrial, putative OS=Ricinus communis...	[more]
D7U9Z5_VITVI	2.7e-76	74.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g01620 PE=4 SV=...	[more]
I3SK50_LOTJA	1.7e-75	67.27	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
V7BK76_PHAVU	1.5e-74	67.28	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G199200g PE=4 SV=1	[more]

BLAST of CmaCh10G011460 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G11060.1	5.9e-75	65.87	mitochondrially targeted single-stranded DNA binding protein	[more]
AT3G18580.1	1.3e-21	29.50	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CmaCh10G011460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435603\|ref\|XP_004135584.1\|	3.8e-92	80.18	PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus]	[more]
gi\|659099379\|ref\|XP_008450570.1\|	1.0e-89	77.88	PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo]	[more]
gi\|657992497\|ref\|XP_008388504.1\|	5.7e-80	71.30	PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [M...	[more]
gi\|657957797\|ref\|XP_008370401.1\|	7.5e-80	70.37	PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [M...	[more]
gi\|657992499\|ref\|XP_008388506.1\|	1.3e-79	71.16	PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X2 [M...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000424	Primosome_PriB/ssb
IPR011344	ssDNA-bd
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003697	single-stranded DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003697	single-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G011460.1	CmaCh10G011460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 77..180 score: 5.7
IPR000424	Primosome PriB/single-strand DNA-binding	PROFILE	PS50935	SSB	coord: 77..186 score: 12
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 12..210 score: 3.5E
IPR011344	Single-stranded DNA-binding protein	TIGRFAMs	TIGR00621	TIGR00621	coord: 75..187 score: 4.9
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 75..189 score: 1.0
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 76..181 score: 2.3
None	No IPR available	PANTHER	PTHR10302:SF6	SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL	coord: 12..210 score: 3.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh10G011460	Cucsa.051260	Cucumber (Gy14) v1	cgycmaB0054
CmaCh10G011460	Cla005174	Watermelon (97103) v1	cmawmB047
CmaCh10G011460	Csa1G568540	Cucumber (Chinese Long) v2	cmacuB059
CmaCh10G011460	MELO3C015270	Melon (DHL92) v3.5.1	cmameB068
CmaCh10G011460	ClCG03G017590	Watermelon (Charleston Gray)	cmawcgB055
CmaCh10G011460	CSPI01G26030	Wild cucumber (PI 183967)	cmacpiB061
CmaCh10G011460	CmoCh10G012300	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G011460	Lsi06G000700	Bottle gourd (USVL1VR-Ls)	cmalsiB076
CmaCh10G011460	Cp4.1LG18g00290	Cucurbita pepo (Zucchini)	cmacpeB081
CmaCh10G011460	MELO3C015270.2	Melon (DHL92) v3.6.1	cmamedB071
CmaCh10G011460	CsaV3_1G038450	Cucumber (Chinese Long) v3	cmacucB0069
CmaCh10G011460	Cla97C03G067970	Watermelon (97103) v2	cmawmbB061
CmaCh10G011460	Bhi02G001799	Wax gourd	cmawgoB0079
CmaCh10G011460	CsGy1G025310	Cucumber (Gy14) v2	cgybcmaB016
CmaCh10G011460	Carg27007	Silver-seed gourd	carcmaB0822

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G011460	Wax gourd	cmawgoB0090
CmaCh10G011460	Cucurbita maxima (Rimu)	cmacmaB085
CmaCh10G011460	Cucumber (Gy14) v1	cgycmaB0176
CmaCh10G011460	Cucurbita moschata (Rifu)	cmacmoB079
CmaCh10G011460	Cucumber (Chinese Long) v2	cmacuB074
CmaCh10G011460	Watermelon (Charleston Gray)	cmawcgB053
CmaCh10G011460	Cucurbita pepo (Zucchini)	cmacpeB091
CmaCh10G011460	Bottle gourd (USVL1VR-Ls)	cmalsiB070
CmaCh10G011460	Cucumber (Gy14) v2	cgybcmaB012