Csa1G568540.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G568540.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSingle-stranded DNA-binding protein; contains IPR000424 (Primosome PriB/single-strand DNA-binding)
LocationChr1 : 20691865 .. 20697059 (+)
Sequence length645
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAGTCGCAATGAGATTCCTCAACCGTTTCAGAACTCCTTCTTCAAATTTTCCCACATCTTCATTCGGTATCTCTCTTTCTCTCTGTCTCATTTTGTTATTTAAGCACTATCTTCTTTCTATTATTACGAGTTGCTTTCGGTTCAGAGCTGAAGGAATTTCTCAAAGAAAATTTGTTTATGTTTTTTTTTTTTTTTTTATTTGAGTGGCCCAACCAAGAATTTGGCTGTTTTGTGTATTGGGTTTGTTTATCTCAGTGCAATATGTGTGCTGGAGTGATGGCTTGGATAATTATTCAACGTTTGCTTGTAGTGGCAAGTGCGCAAACAAGCTCGAAGTTTTGGTTATCGACCGGTGCTTCTGAAGGTGACAACGATGTTGAGAAGAACGATGGAGAAGAAGATGATTATGATACGTTTTCTAATGAATTACAGCCCCAGGGTGTTGATCCCACTCGAGGTTGGGGATATCGAGGCGTACATAAGGTATCTCATCCTTGTCTACAGATGTGTTTCATTTTTAAAAGTTGGGATTTGGAATCTTGTAGGCTGGGAATTTTACCCAATAAGTGATCTTTCTGTTCTTGTGATGACACTTTTTGTTTTTTTGGTGATAGTTTTATTTTTTTCAAATTCACAAACTATCCAAAATAAACGAAACAGCTTCCTTTTTTTCTCTTTTTGTTCTTAGAAAATGTGCCTAGTAACGATCTTACTTGGGTAAGATCTGTTCTATAGGCTGTACAGCGGTGTTTAGTTCTAAGAAAATGTGCCTGGTGACTTGCCTTCTTTTGTTGATAAGTTTTGAAGGAAATCTGGCCTCTTGCGTACTCTGCGTATTTTAGAAAGAATAAGAAGTGAGTAAGTTTTGTGAGCAAGGGCAAGAACAGAAAACTTAGGTGGCTAGAGCTTGAACTTTGAAGTCTGATGTAAGAGAGTAGGAATAACGAATATATGTGTTATATATTGTAAAATTCCAGGTGAGCAAGTAGGACGAGTAGTTTCTTAGCTAGGGAAAGTCTTGTAATTGAGTCTTAAAAGGAATTATAGGCAACAAGCAGAGTGAGTTTAGGAGAAACTCACCTCTGGAACTTCAATTGTTCTGGAATCTGTCCCCGATAGTGAAAGAGTTATTCTCACATGATAATTGGATTCATAATCTGCTTTTGTGGAATATAACCTTCTCTGTTTGTGATTCAAAAAAGCAAAACAAAATAAACAAAAACACAATTGAATATGTTAGCCAAGAGTTTCCTCTCTTTGGCAATTGATCAAACATTTTCCGTAGAGGATATATCGAAGTCTTTGGTATATATCCCATCCCAACTAAGCAAAAGAAGTTATTTTGATTCAGGTGATAAGATTATTGGAAAACGAGGGAAAAACAAGGGAAATCATTTCTTTTCATATTTGTGCAGGGAAGGAAGGGGTCAGTAATCCCCAATATGATATCTTATTCTGCTTTACAATGTGATCAAATGTTCACAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGGACGATAACAATCTTTACCGTTGGAACAGGAGGGATGTATGACCAACGAATTTTTGATGGAAGAGATCTGCCGAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACTACTTGGTGCTTATGCAGTTCAAAAACTTTGTAGAAAGTATGATTTGAACCTCTCATAATAACTGATTTGACTGTATAATTTCACTGAATCTCTGTGGACTTTCAGCGCGTCGGTTTATGTTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATATTCCAGAAATATGTGTTCGACGTGATGGTATTGCAACACATACTATTATCTTTTTATGTCCTTTTCAATTTTATTTGGAACTAGTTGAACACTTAATTAATATGAAGTTGTCATTTGTTAACTTCTCTGCTTTCTACATCTACTTCATTATTTCTTAAAATGTCATTTTAAGCAGATATTAAAGAGTATTCTTTGATTTTCATAATCATAAGGTTAAATTATCATATTAATTCCTGTCATTTGTACTTAGTCTTTCCTTTTATTTAAAAACGAAGTCCATCTTTTTAATAAAGTTTAGTTTTATTCTTCAATAAAGAGAGAAAGAGAGATGAAATTTTGACCACCATTTCACAATGATGGGTTCACCAGTTGATGCTAGCTGAGGAAAACACTGATCTTCCTCTGCCTAATGAAGAGGCGATTGGAATTAAGAGTGCTACGTAGTTGGAACCAACAACCTCTCTATAAAATCCTTTTCCGTTGAGTAAGGAAATGGTTTCGGCACCTCTTGAGTATAACTTGTGCATTTGGGCGATGCCTAGGAAAGGGGAAGCCGCAGACAAAGGGTAGGGGCCTCCTCGAATAATAAAAAGCTCACTAGAGAAATTAAAGCTTTGCTTGGTAGTTGGGAAAGGGAAGCTCAAGCAACCAAAGATAGTACTTCCCAGGGCTTCGATGGTGGTCCATGTTAATCTTATCTTGGAATGTTAGGGGTCTTAATTCTCGCCTCAAAAGAGTGGTTGTGAAAGATTTGTTAGTGAAGTTTAATTTGGATGTTGTTATTATCCAGGAATCTAAGGTTAGTGTTGTTGGCAATAATTTGGTAAAGTCTGTTTGGAGTAGCAGTCATATTAGGTGGGCTGCTTGAGAGGCTCTTTAGGTGGTATTCTTCTAATGTGGAAAGAGGATTCGATCATGGTGATTGACTCTATACAAGGTCAGTTCACTATCTCTATTCTTTGAAAAACTAATGTTGGCTTTTTTGGATGGATCACATGCGTGTACGGTCCCTCGTCTTATAGGCATGGAGACCAGTTTTGGCGGGAGCTTTCTGGTTTATATGGCCTCTCTAGTGAGTGTTGGTGCATTGGGGGAGACTCCAATGTGGTGAGATGGGTTAATGAGAAGAACTTGGACATTCGTTCTACTACAAGTATGAACACTTTTAACGGCTTGATTGAGGAGATGGATATAGTTGATATTCTCCTCTGAAATGGTCTGTTCTTGTGGTCCAGATTAGGGCTCAGACTGGCTGTGTCAAAACTCAACAAATTTTTTCTTTCCAAGCCTTGGGTTGATTTCTTTAGAGAAGTTAGGGTGGATAGACTTCCGCGTACCACCTGTTATCACTTCCCAATTCTCCTAAAGTTAGGGATGCAGTCCCGGGGTCCTACTCCCTTCAGATTTGAAAATGTTTGGTTGGATCATCATCTTTCCCTCAAAAATATCATGGAGAAATTAAGAGGTTTGAAGGTTTTATTGAAGGACTGGAACAAGGAAACTTCTGGCAATATCTTCTTCAAAAAGCAAGCATTACTTGACAAGATAAACTCTTTAGATTTGCTTGAAGAGTCTGGTCCCTTCGATGAAACTAATGCGGTGGAAATAGAAGAGTATAGAGGTGCCTTGCTTGATCTTATTGTTATGGAGCAAAGGATGTGGGTTCATAAATGTAAAATTCAATGGCTTCATGAGGGGAGAACTCAAGCTTCTTCCATAGGTGGGTTTCAGCCCGTACAAGTAAGAGTTTAATCTTGTCTATTGGGAACAATTCGGGTTAGGTCCTAGTCACGAACAATGCGGGTTAATGATGCTAGTAGTTTCACTACGAAGTCTACCTTTCTTAAATTATCCAAATGACCCTCCATCCATCACTGCACCGCTGGTTCGTTACATTTGGAAGGCTAAAATTCTAAAAAAGGTGAAGTTCTTCTAATGGTCGCTCGCCTATAGAAGTCTTTATTGAAAGTAGAGACAAACACACAAATTTACGTGGAAGTCCTAGTACAGGGAGAAAAACCACGGTACTGAAGATCTTTTATTTTCTAATAATTCATAAAGGTACAAAGGGGGAAAATTTATAGGCAACACGAGTCTAATTAAAAAAAATAAAAAATTAGGGTAAAGTAAATCTTAACTACCCATGGGCTTTCATTGTGACCTAAGTCCATTATTTCTAAGATTCTTAACACTCGAGAGAAACTTTACAAAAAATTACAGTACATTACGCCTGGTCCCTCGATGTGCTTCCTTTGCTTCAAAGATGAGGAAACCTTGGACTACTTATTTTTGCATTGTGTCTTTACTAGAAAAGCTTGGAATACTCTGTTCAAAATCTTTAATATGGAGATTTGTCTTCTTAGTAAGATTGATAGTTGAATGCTTGAAGGGTTCAATAGCATAGGCTTTAGTCCGAAGGGTAACATTTTATGGAGACGTGTTACTCGTTCCCTCTTGTGGTGTATTTGGAAAGAGAGGAATAGTAGAATATTTGAAGACAACTATAATTCTTTTGATTTTTTTTGGATGGTCAACACAGCGTCTTGGTGGAGTACGAATTACATCGAACACTTTTGTAATTACAGTTTTTCTATGATTTTCAACAATTGGAAGACCTTATTCTTTAGTTTTTATTTGGGAGGGCCCTCTTGCCCCTTGCCCTTAGGCTGTTCTCTTTTGTTCTTTAAATATGTTTGTTTCTTGTAAAAAAAAAAAGAGAATACTTTCCTTTTATTTTGTTTGATTTTTCAAAATGTCTCTAGTATAACAAAAAGTTGACAGTTACTTTACATGACACATTTTCCTTGGACATTAGCACATTTTCTTTGAATGTGAATCATGTGACAGAGAAGTGATGAGTTGTTGTCTAAAGATGGTATCAAGTAAGAAAAAAACTACCAGCATGTGGTAAACTCATAAGCATTTTGAAATACTGACCCAACGAATTGTAAAAAGAAAAAAAAGAGCCATAGAGACAGAAATGATAATTTATCCTCTAACCGTAATACGATACATACAGAAAATTATTTACAACCAAGCACAGAATACTATTGTTACACGTTGGTTCAAATGTCTTCCGTAAAACATACGATTTGGGACTCCTTTTAACTGCCATGCTTCATTTTTGCAGGGACGCTTCGCCTTTTAAAACCAGGAGAAAGTGCCAGCAATATTTCTCTAGACGATTTAAGTGAGATTTCCTGTTAACATTTTGTTTATTTGATCACGAACCATGGTAACAATGAAGTGCATGAAAACTTTTTCATTCTCTCCCAATCTGAGGTGTTTTTTTTCTTTTTCCTTATGTTTTTGTGACTGACAGAAGAAGGGTTGTTTTCGAACAAGACATAA

mRNA sequence

ATGAACTCAGTCGCAATGAGATTCCTCAACCGTTTCAGAACTCCTTCTTCAAATTTTCCCACATCTTCATTCGTGGCAAGTGCGCAAACAAGCTCGAAGTTTTGGTTATCGACCGGTGCTTCTGAAGGTGACAACGATGTTGAGAAGAACGATGGAGAAGAAGATGATTATGATACGTTTTCTAATGAATTACAGCCCCAGGGTGTTGATCCCACTCGAGGTTGGGGATATCGAGGCGTACATAAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGGACGATAACAATCTTTACCGTTGGAACAGGAGGGATGTATGACCAACGAATTTTTGATGGAAGAGATCTGCCGAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACTACTTGGTGCTTATGCAGTTCAAAAACTTTGTAGAAACGCGTCGGTTTATGTTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATATTCCAGAAATATGTGTTCGACGTGATGGGACGCTTCGCCTTTTAAAACCAGGAGAAAGTGCCAGCAATATTTCTCTAGACGATTTAAAAGAAGGGTTGTTTTCGAACAAGACATAA

Coding sequence (CDS)

ATGAACTCAGTCGCAATGAGATTCCTCAACCGTTTCAGAACTCCTTCTTCAAATTTTCCCACATCTTCATTCGTGGCAAGTGCGCAAACAAGCTCGAAGTTTTGGTTATCGACCGGTGCTTCTGAAGGTGACAACGATGTTGAGAAGAACGATGGAGAAGAAGATGATTATGATACGTTTTCTAATGAATTACAGCCCCAGGGTGTTGATCCCACTCGAGGTTGGGGATATCGAGGCGTACATAAGGCAATAATTTGTGGAAGGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAAATGGGCGGACGATAACAATCTTTACCGTTGGAACAGGAGGGATGTATGACCAACGAATTTTTGATGGAAGAGATCTGCCGAAGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACTACTTGGTGCTTATGCAGTTCAAAAACTTTGTAGAAACGCGTCGGTTTATGTTGAGGGTGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATATTCCAGAAATATGTGTTCGACGTGATGGGACGCTTCGCCTTTTAAAACCAGGAGAAAGTGCCAGCAATATTTCTCTAGACGATTTAAAAGAAGGGTTGTTTTCGAACAAGACATAA

Protein sequence

MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTFSNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT*
Homology
[Close]
BLAST of Csa1G568540.1 vs. Swiss-Prot
Match: SSBP_ARATH (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 9.3e-70
Identity = 134/212 (63.21%), Postives = 160/212 (75.47%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYD-- 60
           MNS+A+R     R+ S     S    SA+  SK W STG  +        +G E+D++  
Sbjct: 1   MNSLAIRVSKVLRSSS----ISPLAISAERGSKSWFSTGPID--------EGVEEDFEEN 60

Query: 61  -TFSNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120
            T   ELQP GVDP +GWG+RGVH+AIICG+VGQAP+QKILRNGRT+TIFTVGTGGM+DQ
Sbjct: 61  VTERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNI 180
           R+    + PKPAQWHRIAVHNE+LG+YAVQKL +N+SVYVEGDIETRVYNDSI+ EVK+I
Sbjct: 121 RLVGATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSI 180

Query: 181 PEICVRRDGTLRLLKPGESASNISLDDLKEGL 210
           PEICVRRDG +R++K GES S IS D+LKEGL
Sbjct: 181 PEICVRRDGKIRMIKYGESISKISFDELKEGL 200

[Close]
BLAST of Csa1G568540.1 vs. Swiss-Prot
Match: SSB2_SALTY (Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ssb2 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09
Identity = 36/114 (31.58%), Postives = 60/114 (52.63%), Query Frame = 1 

Query: 78  RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFDGRDLPKPAQWHRIAVH 137
           RGV+K I+ G +GQ P  + + NG  +   T+ T   +  R+    ++ +  +WHR+ V 
Sbjct: 4   RGVNKVILVGHIGQDPEVRYMPNGGAVANLTLATSETW--RVRQDGEMREHTEWHRVVVF 63

Query: 138 NELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTLRLL 192
            +L    A + L + A VY+EG + TR + D  +G+ K   E+ V   GT+++L
Sbjct: 64  GKL-AEIASEYLRKGAQVYIEGQLRTRKWTDQ-SGQDKYTTEVIVNVGGTMQML 113

[Close]
BLAST of Csa1G568540.1 vs. Swiss-Prot
Match: SSBP_ECOLX (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb PE=3 SV=3)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 1 

Query: 78  RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFDGRDLPKPAQWHRIAVH 137
           RG++K I+ GR+G  P  + + NG  +    V T   +  +     ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDK--QTGEMREQTEWHRVVLF 63

Query: 138 NELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTLRLL------ 197
            +L    A + L + A VY+EG + TR ++D  NG  + I EI V+  GT+++L      
Sbjct: 64  GKL-AEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLGSAPQQ 123

Query: 198 ------KPGESASNISLDDLKEG 209
                 KP ++    S D  K+G
Sbjct: 124 NAQAQPKPQQNGQPQSADATKKG 141

[Close]
BLAST of Csa1G568540.1 vs. Swiss-Prot
Match: SSBR_ECOLX (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb PE=3 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 1 

Query: 78  RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFDGRDLPKPAQWHRIAVH 137
           RG++K I+ GR+G  P  + + NG  +    V T   +  +     ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDK--QTGEMREQTEWHRVVLF 63

Query: 138 NELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTLRLL------ 197
            +L    A + L + A VY+EG + TR ++D  NG  + I EI V+  GT+++L      
Sbjct: 64  GKL-AEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQMLGSAPQQ 123

Query: 198 ------KPGESASNISLDDLKEG 209
                 KP ++    S D  K+G
Sbjct: 124 NAQAQPKPQQNGQPQSADATKKG 141

[Close]
BLAST of Csa1G568540.1 vs. Swiss-Prot
Match: SSB7_ECOLX (Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 9.2e-09
Identity = 34/114 (29.82%), Postives = 60/114 (52.63%), Query Frame = 1 

Query: 78  RGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFDGRDLPKPAQWHRIAVH 137
           RG++K I+ GR+G+ P  + + NG  +    V T   +  +     ++ +  +WHR+ + 
Sbjct: 4   RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDK--QTGEIREQTEWHRVVLF 63

Query: 138 NELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTLRLL 192
            + L   A + L + A VY+EG + TR + D  NG  + + EI V+  GT+++L
Sbjct: 64  GK-LAEVAGEYLRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQML 112

[Close]
BLAST of Csa1G568540.1 vs. TrEMBL
Match: A0A0A0LVY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568540 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 4.0e-120
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60
           MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF
Sbjct: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60

Query: 61  SNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIF 120
           SNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIF
Sbjct: 61  SNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIF 120

Query: 121 DGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEI 180
           DGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEI
Sbjct: 121 DGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEI 180

Query: 181 CVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT 215
           CVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT
Sbjct: 181 CVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT 214

[Close]
BLAST of Csa1G568540.1 vs. TrEMBL
Match: A0A067GQ74_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028045mg PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75
Identity = 142/213 (66.67%), Postives = 170/213 (79.81%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTP-SSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDT 60
           M+S+A RF N  R P SS+  ++S V   Q SSK W S+G+ +G ND +  D  +D +D 
Sbjct: 1   MSSLAARFANLLRVPASSSSHSTSLVLGVQRSSKMWYSSGSFDGKNDDQNMDEVDDVFDD 60

Query: 61  F---SNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYD 120
           F     ELQPQGVDP RGWG+RGVHKAIICG+V   PVQKILRNG+T+TIF+VGTGG++D
Sbjct: 61  FVVEKQELQPQGVDPRRGWGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFD 120

Query: 121 QRIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKN 180
           QRI   +DLPKP QWHRIAVHNE+LG+YAV++L +N+SVYVEGDIE RVYNDSINGEVKN
Sbjct: 121 QRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKN 180

Query: 181 IPEICVRRDGTLRLLKPGESASNISLDDLKEGL 210
           IPEIC+RRDGTLRL+K GES S IS DDL+EGL
Sbjct: 181 IPEICIRRDGTLRLVKSGESISKISFDDLREGL 213

[Close]
BLAST of Csa1G568540.1 vs. TrEMBL
Match: V4SGF4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002449mg PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75
Identity = 142/213 (66.67%), Postives = 170/213 (79.81%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTP-SSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDT 60
           M+S+A RF N  R P SS+  ++S V   Q SSK W S+G+ +G ND +  D  +D +D 
Sbjct: 1   MSSLAARFANLLRVPASSSSHSTSLVLGVQRSSKMWYSSGSFDGKNDDQNMDEVDDVFDD 60

Query: 61  F---SNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYD 120
           F     ELQPQGVDP RGWG+RGVHKAIICG+V   PVQKILRNG+T+TIF+VGTGG++D
Sbjct: 61  FVVEKQELQPQGVDPRRGWGFRGVHKAIICGKVKDTPVQKILRNGKTVTIFSVGTGGLFD 120

Query: 121 QRIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKN 180
           QRI   +DLPKP QWHRIAVHNE+LG+YAV++L +N+SVYVEGDIE RVYNDSINGEVKN
Sbjct: 121 QRIVGSKDLPKPVQWHRIAVHNEILGSYAVKQLVKNSSVYVEGDIEIRVYNDSINGEVKN 180

Query: 181 IPEICVRRDGTLRLLKPGESASNISLDDLKEGL 210
           IPEIC+RRDGTLRL+K GES S IS DDL+EGL
Sbjct: 181 IPEICIRRDGTLRLVKSGESISKISFDDLREGL 213

[Close]
BLAST of Csa1G568540.1 vs. TrEMBL
Match: B9STF2_RICCO (Single-stranded DNA-binding protein, mitochondrial, putative OS=Ricinus communis GN=RCOM_1318760 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 9.7e-74
Identity = 141/213 (66.20%), Postives = 170/213 (79.81%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60
           M+S+A++F    R  S    TSS V   Q S K   ST +  G+NDV KN+  ++++D F
Sbjct: 1   MSSLAVKFAKFLRVSSPAATTSSPVVGLQRSFKTLYSTESFSGENDVGKNNELDEEFDDF 60

Query: 61  SNE---LQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120
             E   LQ QGVDP +GWG+RGVHKAIICG+VGQAPVQKILRNGRT+TIFTVGTGGM+DQ
Sbjct: 61  LGEKPELQIQGVDPRKGWGFRGVHKAIICGKVGQAPVQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNI 180
           RI   +DLPKPAQWHRIAVHNE LGAYAVQ+L +N+SVYVEG+IETRVYNDSI+GEVKNI
Sbjct: 121 RIVGAKDLPKPAQWHRIAVHNETLGAYAVQQLAKNSSVYVEGEIETRVYNDSISGEVKNI 180

Query: 181 PEICVRRDGTLRLLKPGESASNISLDDLKEGLF 211
           PEIC+RRDG +RL+  G++ S+IS DDL+EGLF
Sbjct: 181 PEICIRRDGKIRLVTSGKNVSDISFDDLREGLF 213

[Close]
BLAST of Csa1G568540.1 vs. TrEMBL
Match: A0A068V919_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00000711001 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 138/214 (64.49%), Postives = 164/214 (76.64%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDG-----EED 60
           MNS++ + +   R   S  P S F    Q + K   S+G  + D+D E N       E+D
Sbjct: 1   MNSLSSKLVKLLRISPSIKPASPFALGMQGNLKLCYSSGPFDNDHDKEDNSDHDLEIEDD 60

Query: 61  DYDTFSNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMY 120
           D+     ELQ QGVDP RGW YRGVHKA +CG+VGQAPVQKILRNGRT+TIFTVGTGG+Y
Sbjct: 61  DFHPEKPELQLQGVDPKRGWNYRGVHKAYLCGKVGQAPVQKILRNGRTVTIFTVGTGGLY 120

Query: 121 DQRIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVK 180
           DQRI + +DLPKPAQWHRIAVHNE+LGAYAVQ+L +N+SVYVEG+IETRVYNDSING VK
Sbjct: 121 DQRISEAQDLPKPAQWHRIAVHNEMLGAYAVQQLAKNSSVYVEGEIETRVYNDSINGAVK 180

Query: 181 NIPEICVRRDGTLRLLKPGESASNISLDDLKEGL 210
           NIPEICVRRDG +RL+KPGE  SNIS ++L+EGL
Sbjct: 181 NIPEICVRRDGRVRLIKPGEGISNISFEELREGL 214

[Close]
BLAST of Csa1G568540.1 vs. TAIR10
Match: AT4G11060.1 (AT4G11060.1 mitochondrially targeted single-stranded DNA binding protein)

HSP 1 Score: 264.6 bits (675), Expect = 5.2e-71
Identity = 134/212 (63.21%), Postives = 160/212 (75.47%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYD-- 60
           MNS+A+R     R+ S     S    SA+  SK W STG  +        +G E+D++  
Sbjct: 1   MNSLAIRVSKVLRSSS----ISPLAISAERGSKSWFSTGPID--------EGVEEDFEEN 60

Query: 61  -TFSNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQ 120
            T   ELQP GVDP +GWG+RGVH+AIICG+VGQAP+QKILRNGRT+TIFTVGTGGM+DQ
Sbjct: 61  VTERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQ 120

Query: 121 RIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNI 180
           R+    + PKPAQWHRIAVHNE+LG+YAVQKL +N+SVYVEGDIETRVYNDSI+ EVK+I
Sbjct: 121 RLVGATNQPKPAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSI 180

Query: 181 PEICVRRDGTLRLLKPGESASNISLDDLKEGL 210
           PEICVRRDG +R++K GES S IS D+LKEGL
Sbjct: 181 PEICVRRDGKIRMIKYGESISKISFDELKEGL 200

[Close]
BLAST of Csa1G568540.1 vs. TAIR10
Match: AT3G18580.1 (AT3G18580.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-21
Identity = 52/160 (32.50%), Postives = 88/160 (55.00%), Query Frame = 1 

Query: 53  EEDDYDTFSNELQPQGVDPTRGWGYR---------------GVHKAIICGRVGQAPVQKI 112
           E+ D+D   + ++P+  DP   +                  G+ KAI+ G+VGQ P+QK 
Sbjct: 38  EDSDFDELESPIEPKASDPVSRFSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKK 97

Query: 113 LRNGRTITIFTVGTGGMYDQR----IFDGRDLP--KPAQWHRIAVHNELLGAYAVQKLCR 172
           L++GRT+T+F+VGTGG+ + R      D R+       QWHR++V+ E L    ++ +  
Sbjct: 98  LKSGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEP 157

Query: 173 NASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTLRLL 192
              +Y+EG++ET+++ D + G V+ I E+ +RR+G +  L
Sbjct: 158 GTVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFL 197

[Close]
BLAST of Csa1G568540.1 vs. NCBI nr
Match: gi|449435603|ref|XP_004135584.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus])

HSP 1 Score: 438.7 bits (1127), Expect = 5.8e-120
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60
           MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF
Sbjct: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60

Query: 61  SNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIF 120
           SNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIF
Sbjct: 61  SNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIF 120

Query: 121 DGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEI 180
           DGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEI
Sbjct: 121 DGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEI 180

Query: 181 CVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT 215
           CVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT
Sbjct: 181 CVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT 214

[Close]
BLAST of Csa1G568540.1 vs. NCBI nr
Match: gi|659099379|ref|XP_008450570.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo])

HSP 1 Score: 396.7 bits (1018), Expect = 2.5e-107
Identity = 193/214 (90.19%), Postives = 200/214 (93.46%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTF 60
           MNSV +R LNRFR PSSN PTSSFVAS QTSSKFWLSTGASE D D+EKNDG +DDYD F
Sbjct: 1   MNSVTVRLLNRFRIPSSNSPTSSFVASTQTSSKFWLSTGASESDVDIEKNDGGDDDYDAF 60

Query: 61  SNELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIF 120
           SNELQPQGVDP+RGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRI 
Sbjct: 61  SNELQPQGVDPSRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIV 120

Query: 121 DGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEI 180
           DGR LPKPAQWHRIAVHNELLGAYAVQKLC+NASVYVEGDIETRVYNDSINGEVKNIPEI
Sbjct: 121 DGRGLPKPAQWHRIAVHNELLGAYAVQKLCKNASVYVEGDIETRVYNDSINGEVKNIPEI 180

Query: 181 CVRRDGTLRLLKPGESASNISLDDLKEGLFSNKT 215
           CVRRDG L LLKPGESASN+SLDDLKE LFSN+T
Sbjct: 181 CVRRDGMLHLLKPGESASNLSLDDLKERLFSNET 214

[Close]
BLAST of Csa1G568540.1 vs. NCBI nr
Match: gi|657957797|ref|XP_008370401.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [Malus domestica])

HSP 1 Score: 299.7 bits (766), Expect = 4.2e-78
Identity = 148/216 (68.52%), Postives = 171/216 (79.17%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGD--NDVEKNDGEEDDYD 60
           M+SVA RF+   R    + PTSSF    Q SSK W S+  S+ D  ND  KN+  EDD+D
Sbjct: 1   MSSVAARFVKFMRVSVPSSPTSSFAVGVQRSSKLWFSSTPSDSDIGNDDTKNNVAEDDFD 60

Query: 61  TFSN-----ELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGG 120
            F        LQPQGVDP RGWGYRGVHKAIICG+VGQAPVQKILRNGRT+TIFTVGTGG
Sbjct: 61  DFIGAKKDVNLQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRNGRTVTIFTVGTGG 120

Query: 121 MYDQRIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGE 180
           M+DQR+   +DLP+PAQWHRIAVHNE LGAYAV+++ +NAS+YVEGDIETRVYNDSINGE
Sbjct: 121 MFDQRVMGAKDLPRPAQWHRIAVHNEALGAYAVKQVVKNASIYVEGDIETRVYNDSINGE 180

Query: 181 VKNIPEICVRRDGTLRLLKPGESASNISLDDLKEGL 210
           VK+IPEIC+R DG LRL+K GES S+ISLDDL+E L
Sbjct: 181 VKHIPEICIRHDGKLRLIKTGESISSISLDDLREDL 216

[Close]
BLAST of Csa1G568540.1 vs. NCBI nr
Match: gi|657957799|ref|XP_008370402.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X2 [Malus domestica])

HSP 1 Score: 296.6 bits (758), Expect = 3.5e-77
Identity = 149/216 (68.98%), Postives = 172/216 (79.63%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGD--NDVEKNDGEEDDYD 60
           M+SVA RF+   R    + PTSSFV   Q SSK W S+  S+ D  ND  KN+  EDD+D
Sbjct: 1   MSSVAARFVKFMRVSVPSSPTSSFVG-VQRSSKLWFSSTPSDSDIGNDDTKNNVAEDDFD 60

Query: 61  TFSN-----ELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGG 120
            F        LQPQGVDP RGWGYRGVHKAIICG+VGQAPVQKILRNGRT+TIFTVGTGG
Sbjct: 61  DFIGAKKDVNLQPQGVDPRRGWGYRGVHKAIICGKVGQAPVQKILRNGRTVTIFTVGTGG 120

Query: 121 MYDQRIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGE 180
           M+DQR+   +DLP+PAQWHRIAVHNE LGAYAV+++ +NAS+YVEGDIETRVYNDSINGE
Sbjct: 121 MFDQRVMGAKDLPRPAQWHRIAVHNEALGAYAVKQVVKNASIYVEGDIETRVYNDSINGE 180

Query: 181 VKNIPEICVRRDGTLRLLKPGESASNISLDDLKEGL 210
           VK+IPEIC+R DG LRL+K GES S+ISLDDL+E L
Sbjct: 181 VKHIPEICIRHDGKLRLIKTGESISSISLDDLREDL 215

[Close]
BLAST of Csa1G568540.1 vs. NCBI nr
Match: gi|657992497|ref|XP_008388504.1| (PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [Malus domestica])

HSP 1 Score: 296.2 bits (757), Expect = 4.6e-77
Identity = 147/216 (68.06%), Postives = 169/216 (78.24%), Query Frame = 1 

Query: 1   MNSVAMRFLNRFRTPSSNFPTSSFVASAQTSSKFWLSTGASEGD--NDVEKNDGEEDDYD 60
           M+SVA RF    R    + PTSS     Q SSK W S+  S+ D  ND  KN+G ED +D
Sbjct: 1   MSSVAARFAKFMRVSVPSSPTSSLAVGVQRSSKLWCSSIPSDSDIGNDDTKNNGAEDGFD 60

Query: 61  TFSN-----ELQPQGVDPTRGWGYRGVHKAIICGRVGQAPVQKILRNGRTITIFTVGTGG 120
            F        LQPQGVDP RGWG+RGVHKAIICG+VGQAPVQKILRNGRT+TIFTVGTGG
Sbjct: 61  DFIGAKKDVNLQPQGVDPRRGWGFRGVHKAIICGKVGQAPVQKILRNGRTVTIFTVGTGG 120

Query: 121 MYDQRIFDGRDLPKPAQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGE 180
           M+DQR+   +DLP+PAQWHRIAVHNE LGAYAV++L +NAS+YVEGDIETRVYNDSINGE
Sbjct: 121 MFDQRVMGAKDLPRPAQWHRIAVHNEALGAYAVKQLVKNASIYVEGDIETRVYNDSINGE 180

Query: 181 VKNIPEICVRRDGTLRLLKPGESASNISLDDLKEGL 210
           VK+IPEIC+R DG LRL+K GES S+ISLDDL+E L
Sbjct: 181 VKHIPEICIRHDGKLRLIKTGESVSSISLDDLREDL 216

The following BLAST results are available for this feature:
BLAST of Csa1G568540.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SSBP_ARATH9.3e-7063.21Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At... [more]
SSB2_SALTY1.8e-0931.58Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium (strain LT2 / SG... [more]
SSBP_ECOLX3.2e-0928.67Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb P... [more]
SSBR_ECOLX3.2e-0928.67Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb P... [more]
SSB7_ECOLX9.2e-0929.82Plasmid-derived single-stranded DNA-binding protein OS=Escherichia coli GN=ssb P... [more]
BLAST of Csa1G568540.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVY2_CUCSA4.0e-120100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G568540 PE=4 SV=1[more]
A0A067GQ74_CITSI1.4e-7566.67Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028045mg PE=4 SV=1[more]
V4SGF4_9ROSI1.4e-7566.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002449mg PE=4 SV=1[more]
B9STF2_RICCO9.7e-7466.20Single-stranded DNA-binding protein, mitochondrial, putative OS=Ricinus communis... [more]
A0A068V919_COFCA1.1e-7264.49Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00000711001 PE=4 SV=1[more]
BLAST of Csa1G568540.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G11060.15.2e-7163.21 mitochondrially targeted single-stranded DNA binding protein[more]
AT3G18580.15.0e-2132.50 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of Csa1G568540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435603|ref|XP_004135584.1|5.8e-120100.00PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis sativus][more]
gi|659099379|ref|XP_008450570.1|2.5e-10790.19PREDICTED: single-stranded DNA-binding protein, mitochondrial [Cucumis melo][more]
gi|657957797|ref|XP_008370401.1|4.2e-7868.52PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [M... [more]
gi|657957799|ref|XP_008370402.1|3.5e-7768.98PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X2 [M... [more]
gi|657992497|ref|XP_008388504.1|4.6e-7768.06PREDICTED: single-stranded DNA-binding protein, mitochondrial-like isoform X1 [M... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000424Primosome_PriB/ssb
IPR011344ssDNA-bd
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005575 cellular_component
molecular_function GO:0003697 single-stranded DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G568540Csa1G568540gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G568540.1Csa1G568540.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G568540.1.cds1Csa1G568540.1.cds1CDS
Csa1G568540.1.cds2Csa1G568540.1.cds2CDS
Csa1G568540.1.cds3Csa1G568540.1.cds3CDS
Csa1G568540.1.cds4Csa1G568540.1.cds4CDS
Csa1G568540.1.cds5Csa1G568540.1.cds5CDS
Csa1G568540.1.cds6Csa1G568540.1.cds6CDS


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000424Primosome PriB/single-strand DNA-bindingPFAMPF00436SSBcoord: 80..183
score: 1.0
IPR000424Primosome PriB/single-strand DNA-bindingPROFILEPS50935SSBcoord: 80..189
score: 11
IPR011344Single-stranded DNA-binding proteinPANTHERPTHR10302SINGLE-STRANDED DNA-BINDING PROTEINcoord: 1..209
score: 5.0E
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 78..184
score: 3.7
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 78..191
score: 4.11
NoneNo IPR availablePANTHERPTHR10302:SF6SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIALcoord: 1..209
score: 5.0E