Csa1G533620 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G533620
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Emb\|CAB87627.1
Location	Chr1 : 19018740 .. 19019535 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATATGGCATGGCATTGGCATTGGCATGGAATTTTCTAACTATTTAATATTTCCCTTCACTTCCACTCCATTTGGAGATTAAGAACCTAAAGGAAGGAAGAAAGGCCCCATAGAAAATGTGTCCGCTGAGATTGATTCTCATATTTCTCTCAGCGACTCTTGCAGGCTTCGTCCTTATCCGTAACCTCAAATCTCCCTCTCAAGATTTCCACGCCGATGACCATACTTTCGATTCCAATTCCTCTTCATCCCCCAACTCCAACAAGGTCCTTCTTTCTCTCTCTTCTAATACAATTCTTTTTTAATTTCTTCCATTTCTATATCAAATCTTTCTTTCATTAATTGGTGTGTACGTACGTGCTGTATATATATATATGTTTGAACAGATCTCATCGGGGTTCTGGACGGTGGTAGATATGGCTTCCGGTCGCTACTTATGGAGGCATTTGTTTTCGTCGTCGTCGTCGGAGAAGGCTTCCGATTGATGGATATGATGAATTGTGTTTGGGAGAGGGGTTAGGGGTTAGGGGTTAAGGGTTTTGTTTGGATTAATTGTATCTTCTCCTTGTATATCTTCATTGTTCCGATCCCTTTAATTTCCACCCCTCTTCTTCCCTTCCTATCCAATTACTATATGTATTCAAACTGTTCACAAATGCTTGATCGCTATTGCTTACGATTCCAATTGGGATTTTCTTAAGAAACAGATCAAACTGAGGGTTTTGAAGATACAATAGACACGATGAATGAATCAATCAATCCAATTATTGAATTCCTGCAAGTGCCGAGATCAGG

mRNA sequence

ATGTGTCCGCTGAGATTGATTCTCATATTTCTCTCAGCGACTCTTGCAGGCTTCGTCCTTATCCGTAACCTCAAATCTCCCTCTCAAGATTTCCACGCCGATGACCATACTTTCGATTCCAATTCCTCTTCATCCCCCAACTCCAACAAGATCTCATCGGGGTTCTGGACGGTGGTAGATATGGCTTCCGGTCGCTACTTATGGAGGCATTTGTTTTCGTCGTCGTCGTCGGAGAAGGCTTCCGATTGA

Coding sequence (CDS)

ATGTGTCCGCTGAGATTGATTCTCATATTTCTCTCAGCGACTCTTGCAGGCTTCGTCCTTATCCGTAACCTCAAATCTCCCTCTCAAGATTTCCACGCCGATGACCATACTTTCGATTCCAATTCCTCTTCATCCCCCAACTCCAACAAGATCTCATCGGGGTTCTGGACGGTGGTAGATATGGCTTCCGGTCGCTACTTATGGAGGCATTTGTTTTCGTCGTCGTCGTCGGAGAAGGCTTCCGATTGA

Protein sequence

MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVDMASGRYLWRHLFSSSSSEKASD*

Homology

[Close]

BLAST of Csa1G533620 vs. TrEMBL
Match: A0A0A0LVB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533620 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.7e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD 60
          MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD 60

Query: 61 MASGRYLWRHLFSSSSSEKASD 83
          MASGRYLWRHLFSSSSSEKASD
Sbjct: 61 MASGRYLWRHLFSSSSSEKASD 82

[Close]

BLAST of Csa1G533620 vs. TrEMBL
Match: A0A0A0LV42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-21
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDF----HADDHTFDSNSSSSPNSNKISSGFW 60
          MCPLR ILIFLSATLAGF ++RNLKS  QDF    ++DD++ + +SS S + +K+SSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TVVDMASGRYLWRHLFSSSSSEKASD 83
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TLVDMASGRYLWRHLF--PSSKKPSD 84

[Close]

BLAST of Csa1G533620 vs. TrEMBL
Match: A0A067E3Z4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034691mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-17
Identity = 52/83 (62.65%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHAD-----DHTFDSNSSSSPNSN---KIS 60
          MCPLRLILIFLSATLAGF +IRNLKSP Q    D     D + D+  + SP S     + 
Sbjct: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALE 60

Query: 61 SGFWTVVDMASGRYLWRHLFSSS 76
          SGFWT VDMASG+YLWRHL SSS
Sbjct: 61 SGFWTFVDMASGKYLWRHLGSSS 83

[Close]

BLAST of Csa1G533620 vs. TrEMBL
Match: V4SWS0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002982mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-17
Identity = 52/83 (62.65%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHAD-----DHTFDSNSSSSPNSN---KIS 60
          MCPLRLILIFLSATLAGF +IRNLKSP Q    D     D + D+  + SP S     + 
Sbjct: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALE 60

Query: 61 SGFWTVVDMASGRYLWRHLFSSS 76
          SGFWT VDMASG+YLWRHL SSS
Sbjct: 61 SGFWTFVDMASGKYLWRHLGSSS 83

[Close]

BLAST of Csa1G533620 vs. TrEMBL
Match: A0A061GYY4_THECC (Methyltransferase-related protein, putative OS=Theobroma cacao GN=TCM_042267 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-17
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNS--------NKIS 60
          MCPLRLILIFLSATLAGF +IRNLKS  Q    D+   ++N +   NS          I 
Sbjct: 1  MCPLRLILIFLSATLAGFFVIRNLKSQPQANDEDEPQTNTNINEDDNSLSAFSKVRTAIE 60

Query: 61 SGFWTVVDMASGRYLWRHLFSSSS 77
          SGFWT VDMASGRYLWRHL SS+S
Sbjct: 61 SGFWTCVDMASGRYLWRHLVSSNS 84

[Close]

BLAST of Csa1G533620 vs. TAIR10
Match: AT5G58375.1 (AT5G58375.1 Methyltransferase-related protein)

HSP 1 Score: 81.3 bits (199), Expect = 3.2e-16
Identity = 47/84 (55.95%), Postives = 52/84 (61.90%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQD---------FHADDHTFDSNSSSSPNSNKI 60
          MCPLRLILIFLSATLAGF +++ L S S D          HADD   DS S  S     +
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADD---DSVSGFSKVGMAM 60

Query: 61 SSGFWTVVDMASGRYLWRHLFSSS 76
           SGFWT VDMASGRYLW +L S++
Sbjct: 61 KSGFWTCVDMASGRYLWNNLCSNA 81

[Close]

BLAST of Csa1G533620 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-11
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPN---SNKISSGFWT 60
          MCPLR +L+F SA LAG++  R + S  + F   D    + +          K+ +G WT
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF--SDELLQAEAKEKQGLDFKRKMDNGLWT 60

Query: 61 VVDMASGRYLWRHL 72
           VDMASGRYLWR+L
Sbjct: 61 FVDMASGRYLWRNL 72

[Close]

BLAST of Csa1G533620 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 63.2 bits (152), Expect = 9.0e-11
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPN-SNKISSGFWTVV 60
          MCP+R +L+F SA LAG+   + + S S +F + D   + N     N   K+ +GFW  V
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSS-SPEFDSPD---ELNEKQELNLKKKMENGFWVFV 60

Query: 61 DMASGRYLWRHL 72
          DMASGRYLWR+L
Sbjct: 61 DMASGRYLWRNL 68

[Close]

BLAST of Csa1G533620 vs. NCBI nr
Match: gi|700210759|gb|KGN65855.1| (hypothetical protein Csa_1G533620 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 9.6e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD 60
          MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD 60

Query: 61 MASGRYLWRHLFSSSSSEKASD 83
          MASGRYLWRHLFSSSSSEKASD
Sbjct: 61 MASGRYLWRHLFSSSSSEKASD 82

[Close]

BLAST of Csa1G533620 vs. NCBI nr
Match: gi|659107022|ref|XP_008453499.1| (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSN----SSSSPNSNKISSGFW 60
          MCPLR ILIFLSATLAGF ++RNLKS  QDF A D++ DS+    SS S + +K+SSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTSCSKVSSGFW 60

Query: 61 TVVDMASGRYLWRHLFSSSSSEKASD 83
          TVVDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TVVDMASGRYLWRHLF--PSSKKPSD 84

[Close]

BLAST of Csa1G533620 vs. NCBI nr
Match: gi|700208790|gb|KGN63886.1| (hypothetical protein Csa_1G025180 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 5.3e-21
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDF----HADDHTFDSNSSSSPNSNKISSGFW 60
          MCPLR ILIFLSATLAGF ++RNLKS  QDF    ++DD++ + +SS S + +K+SSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TVVDMASGRYLWRHLFSSSSSEKASD 83
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TLVDMASGRYLWRHLF--PSSKKPSD 84

[Close]

BLAST of Csa1G533620 vs. NCBI nr
Match: gi|1000969250|ref|XP_015573838.1| (PREDICTED: uncharacterized protein LOC8282736 [Ricinus communis])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD 60
          MCPLRLILIFLSAT+AGF L+RNLKS   D  +DD   DS++  S   + I SGFWT VD
Sbjct: 1  MCPLRLILIFLSATVAGFFLVRNLKSSPND--SDDPQSDSSTDDSKVRSAIKSGFWTTVD 60

Query: 61 MASGRYLWRHLFSSSSSEKA 81
          MASGRYLWRHL SSSSS  +
Sbjct: 61 MASGRYLWRHLVSSSSSSSS 78

[Close]

BLAST of Csa1G533620 vs. NCBI nr
Match: gi|1012205828|ref|XP_015931860.1| (PREDICTED: uncharacterized protein LOC107458164 [Arachis duranensis])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 1  MCPLRLILIFLSATLAGFVLIRNLKS-PSQ-DFHADD------HTFDSNSSSSPNSNKIS 60
          MCPLR+ILIFLSATLAGF L+RN++S PSQ D H DD      ++  SNSSSS   + I+
Sbjct: 1  MCPLRVILIFLSATLAGFFLLRNIRSQPSQLDNHDDDDDSSTQNSHSSNSSSSKIGSAIN 60

Query: 61 SGFWTVVDMASGRYLWRHLFSSSSSEKA 81
          SGFWT+VDMASGRYLWRH    SS++ +
Sbjct: 61 SGFWTLVDMASGRYLWRHRHLVSSTQSS 88

The following BLAST results are available for this feature:

BLAST of Csa1G533620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVB2_CUCSA	6.7e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533620 PE=4 SV=1	[more]
A0A0A0LV42_CUCSA	3.7e-21	65.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1	[more]
A0A067E3Z4_CITSI	2.5e-17	62.65	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034691mg PE=4 SV=1	[more]
V4SWS0_9ROSI	2.5e-17	62.65	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002982mg PE=4 SV=1	[more]
A0A061GYY4_THECC	9.4e-17	60.71	Methyltransferase-related protein, putative OS=Theobroma cacao GN=TCM_042267 PE=...	[more]

BLAST of Csa1G533620 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58375.1	3.2e-16	55.95	Methyltransferase-related protein	[more]
AT5G14602.1	4.0e-11	43.24	FUNCTIONS IN: molecular_function unknown	[more]
AT5G18150.1	9.0e-11	45.83	Methyltransferase-related protein	[more]

BLAST of Csa1G533620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210759\|gb\|KGN65855.1\|	9.6e-39	100.00	hypothetical protein Csa_1G533620 [Cucumis sativus]	[more]
gi\|659107022\|ref\|XP_008453499.1\|	1.4e-21	68.60	PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo]	[more]
gi\|700208790\|gb\|KGN63886.1\|	5.3e-21	65.12	hypothetical protein Csa_1G025180 [Cucumis sativus]	[more]
gi\|1000969250\|ref\|XP_015573838.1\|	2.9e-19	66.25	PREDICTED: uncharacterized protein LOC8282736 [Ricinus communis]	[more]
gi\|1012205828\|ref\|XP_015931860.1\|	1.2e-17	61.36	PREDICTED: uncharacterized protein LOC107458164 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU105601	cucumber EST collection version 3.0	transcribed_cluster
CU129622	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G533620.1	Csa1G533620.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105601	CU105601	transcribed_cluster
CU129622	CU129622	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 2..82 score: 1.7
None	No IPR available	PANTHER	PTHR34132:SF2	SUBFAMILY NOT NAMED	coord: 2..82 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G533620	Cla008117	Watermelon (97103) v1	cuwmB021
Csa1G533620	MELO3C020504	Melon (DHL92) v3.5.1	cumeB028
Csa1G533620	ClCG03G000250	Watermelon (Charleston Gray)	cuwcgB047
Csa1G533620	Lsi02G012290	Bottle gourd (USVL1VR-Ls)	culsiB030
Csa1G533620	Cla97C03G051060	Watermelon (97103) v2	cuwmbB043
Csa1G533620	Bhi08G000366	Wax gourd	cuwgoB048
Csa1G533620	CSPI01G24360	Wild cucumber (PI 183967)	cpicuB001
Csa1G533620	Cucsa.151950	Cucumber (Gy14) v1	cgycuB219
Csa1G533620	CmaCh13G000170	Cucurbita maxima (Rimu)	cmacuB213
Csa1G533620	CmaCh01G007230	Cucurbita maxima (Rimu)	cmacuB433
Csa1G533620	CmoCh13G000080	Cucurbita moschata (Rifu)	cmocuB197
Csa1G533620	Cp4.1LG02g11350	Cucurbita pepo (Zucchini)	cpecuB532
Csa1G533620	CsGy1G023850	Cucumber (Gy14) v2	cgybcuB002
Csa1G533620	Carg26962	Silver-seed gourd	carcuB0358
Csa1G533620	Carg07020	Silver-seed gourd	carcuB0548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G533620	Cucurbita moschata (Rifu)	cmocuB204
Csa1G533620	Cucurbita moschata (Rifu)	cmocuB416
Csa1G533620	Cucurbita pepo (Zucchini)	cpecuB507
Csa1G533620	Melon (DHL92) v3.6.1	cumedB023
Csa1G533620	Cucurbita maxima (Rimu)	cmacuB219
Csa1G533620	Cucurbita maxima (Rimu)	cmacuB427