CmoCh13G000080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G000080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMethyltransferase-related protein, putative
LocationCmo_Chr13 : 136514 .. 136877 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTTGTTCTCCGGAACCTCAAATCTCAGCCGCAAGATTTCGAGGCCGACGATAATTCCGAGACCCACTCCAACGATGTGTCTACCAATTCGGCCTCCTCGTCCTCCTTCTCCAAGGTTCTTGTCATTCTTTTATACCGGAATCTCGCATTTCCTTCTTGTTTCTTTGTTTGTGTCTGAACGGAAGGATTGTGGTTTGTTTGAACAGGTGTCCTCGGCAATGCAATCGGGATTCTGGACGGTGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTGCCCTCGTCGAAGAAGCCTTCCAATTGA

mRNA sequence

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTTGTTCTCCGGAACCTCAAATCTCAGCCGCAAGATTTCGAGGCCGACGATAATTCCGAGACCCACTCCAACGATGTGTCTACCAATTCGGCCTCCTCGTCCTCCTTCTCCAAGGTTCTTGTGTCCTCGGCAATGCAATCGGGATTCTGGACGGTGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTGCCCTCGTCGAAGAAGCCTTCCAATTGA

Coding sequence (CDS)

ATGTGTCCGCTGAGATTTATTCTCATATTTCTCTCAGCGACTCTTGCCGGCTTCTTTGTTCTCCGGAACCTCAAATCTCAGCCGCAAGATTTCGAGGCCGACGATAATTCCGAGACCCACTCCAACGATGTGTCTACCAATTCGGCCTCCTCGTCCTCCTTCTCCAAGGTTCTTGTGTCCTCGGCAATGCAATCGGGATTCTGGACGGTGGTCGACATGGCCAGCGGCCGCTACTTGTGGAGGCATTTGTTGCCCTCGTCGAAGAAGCCTTCCAATTGA
Homology
[Close]
BLAST of CmoCh13G000080 vs. TrEMBL
Match: A0A0A0LV42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-26
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF A DNS+ +SN+   +S+ SSS SKV   
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEF--DSSDSSSCSKV--- 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
              SGFWT+VDMASGRYLWRHL PSSKKPS+
Sbjct: 61 ---SSGFWTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of CmoCh13G000080 vs. TrEMBL
Match: I3T9P9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-22
Identity = 63/93 (67.74%), Postives = 73/93 (78.49%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSE--THSNDVSTNSASSSSFSKVL 60
          MCPLRFILIFLSATLAGFFVLRNL+SQP   + D N E  T S+D S NS+S ++ SK  
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTESSD-SANSSSITATSKSK 60

Query: 61 VSSAMQSGFWTVVDMASGRYLWRHLLPSSKKPS 92
          V  A++SGFWT+VDMASGRYLWR L+PSS K S
Sbjct: 61 VRVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

[Close]
BLAST of CmoCh13G000080 vs. TrEMBL
Match: A0A067LEU7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17330 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.7e-20
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQP-QDFEADDNSETHSNDVSTNSASSSSFSKVLV 60
          MCPLR ILIFLSATLAGFFV+RNLKS+P  D    DNS++ S+  S +S +++S +   V
Sbjct: 1  MCPLRVILIFLSATLAGFFVVRNLKSRPLTDDGGGDNSQSSSSSSSGSSINNASLNS-KV 60

Query: 61 SSAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
           SA++SGFWT VDMASGRYLW+HL+PSS  PS+
Sbjct: 61 RSAIESGFWTFVDMASGRYLWKHLVPSSSSPSS 92

[Close]
BLAST of CmoCh13G000080 vs. TrEMBL
Match: A0A061GYY4_THECC (Methyltransferase-related protein, putative OS=Theobroma cacao GN=TCM_042267 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-19
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSN-DVSTNSASSSSFSKVLV 60
          MCPLR ILIFLSATLAGFFV+RNLKSQPQ   A+D  E  +N +++ +  S S+FSK  V
Sbjct: 1  MCPLRLILIFLSATLAGFFVIRNLKSQPQ---ANDEDEPQTNTNINEDDNSLSAFSK--V 60

Query: 61 SSAMQSGFWTVVDMASGRYLWRHLLPSSKKPS 92
           +A++SGFWT VDMASGRYLWRHL+ S+ K S
Sbjct: 61 RTAIESGFWTCVDMASGRYLWRHLVSSNSKRS 87

[Close]
BLAST of CmoCh13G000080 vs. TrEMBL
Match: W9SAE2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.8e-19
Identity = 62/96 (64.58%), Postives = 71/96 (73.96%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSN-DVSTNS----ASSSSFS 60
          MCPLR ILIFLSATLAGFFVLRNLKSQP+  +     ETH N D S  +    +++S FS
Sbjct: 1  MCPLRIILIFLSATLAGFFVLRNLKSQPES-QFPSGDETHENLDESEKTKLPNSTTSPFS 60

Query: 61 KVLVSSAMQSGFWTVVDMASGRYLWRHLLPSSKKPS 92
          KV   SAM+SGFWT VDMASGRYLWRHL+ S+ K S
Sbjct: 61 KVC--SAMESGFWTCVDMASGRYLWRHLVSSNSKRS 93

[Close]
BLAST of CmoCh13G000080 vs. TAIR10
Match: AT5G58375.1 (AT5G58375.1 Methyltransferase-related protein)

HSP 1 Score: 83.2 bits (204), Expect = 9.3e-17
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSET-HSNDVSTNSASSSSFSKVLV 60
          MCPLR ILIFLSATLAGFFVL+ L S   D   D  ++  H++D S      S FSKV  
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSV-----SGFSKV-- 60

Query: 61 SSAMQSGFWTVVDMASGRYLWRHLLPSSKKPS 92
            AM+SGFWT VDMASGRYLW +L  ++K+ S
Sbjct: 61 GMAMKSGFWTCVDMASGRYLWNNLCSNAKRSS 85

[Close]
BLAST of CmoCh13G000080 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-11
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCP+RF+L+F SA LAG+F  + + S P+    D+ +E                 ++ + 
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFDSPDELNEK---------------QELNLK 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKK 90
            M++GFW  VDMASGRYLWR+L    +K
Sbjct: 61 KKMENGFWVFVDMASGRYLWRNLKEMREK 74

[Close]
BLAST of CmoCh13G000080 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRF+L+F SA LAG+   R + S P+ F +D+  +  + +          F +    
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF-SDELLQAEAKE-----KQGLDFKR---- 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHL 84
            M +G WT VDMASGRYLWR+L
Sbjct: 61 -KMDNGLWTFVDMASGRYLWRNL 72

[Close]
BLAST of CmoCh13G000080 vs. NCBI nr
Match: gi|700208790|gb|KGN63886.1| (hypothetical protein Csa_1G025180 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-26
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF A DNS+ +SN+   +S+ SSS SKV   
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEF--DSSDSSSCSKV--- 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
              SGFWT+VDMASGRYLWRHL PSSKKPS+
Sbjct: 61 ---SSGFWTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of CmoCh13G000080 vs. NCBI nr
Match: gi|659107022|ref|XP_008453499.1| (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-25
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSNDVSTNSASSSSFSKVLVS 60
          MCPLRFILIFLSATLAGFFVLRNLKSQPQDF A DNS+  S ++  +S+ S+S SKV   
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKEL--DSSDSTSCSKV--- 60

Query: 61 SAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
              SGFWTVVDMASGRYLWRHL PSSKKPS+
Sbjct: 61 ---SSGFWTVVDMASGRYLWRHLFPSSKKPSD 84

[Close]
BLAST of CmoCh13G000080 vs. NCBI nr
Match: gi|388522359|gb|AFK49241.1| (unknown [Lotus japonicus])

HSP 1 Score: 111.3 bits (277), Expect = 9.0e-22
Identity = 63/93 (67.74%), Postives = 73/93 (78.49%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSE--THSNDVSTNSASSSSFSKVL 60
          MCPLRFILIFLSATLAGFFVLRNL+SQP   + D N E  T S+D S NS+S ++ SK  
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTESSD-SANSSSITATSKSK 60

Query: 61 VSSAMQSGFWTVVDMASGRYLWRHLLPSSKKPS 92
          V  A++SGFWT+VDMASGRYLWR L+PSS K S
Sbjct: 61 VRVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

[Close]
BLAST of CmoCh13G000080 vs. NCBI nr
Match: gi|802540798|ref|XP_012078343.1| (PREDICTED: uncharacterized protein LOC105639013 [Jatropha curcas])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQP-QDFEADDNSETHSNDVSTNSASSSSFSKVLV 60
          MCPLR ILIFLSATLAGFFV+RNLKS+P  D    DNS++ S+  S +S +++S +   V
Sbjct: 1  MCPLRVILIFLSATLAGFFVVRNLKSRPLTDDGGGDNSQSSSSSSSGSSINNASLNS-KV 60

Query: 61 SSAMQSGFWTVVDMASGRYLWRHLLPSSKKPSN 93
           SA++SGFWT VDMASGRYLW+HL+PSS  PS+
Sbjct: 61 RSAIESGFWTFVDMASGRYLWKHLVPSSSSPSS 92

[Close]
BLAST of CmoCh13G000080 vs. NCBI nr
Match: gi|590591550|ref|XP_007017049.1| (Methyltransferase-related protein, putative [Theobroma cacao])

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-19
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1 

Query: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHSN-DVSTNSASSSSFSKVLV 60
          MCPLR ILIFLSATLAGFFV+RNLKSQPQ   A+D  E  +N +++ +  S S+FSK  V
Sbjct: 1  MCPLRLILIFLSATLAGFFVIRNLKSQPQ---ANDEDEPQTNTNINEDDNSLSAFSK--V 60

Query: 61 SSAMQSGFWTVVDMASGRYLWRHLLPSSKKPS 92
           +A++SGFWT VDMASGRYLWRHL+ S+ K S
Sbjct: 61 RTAIESGFWTCVDMASGRYLWRHLVSSNSKRS 87

The following BLAST results are available for this feature:
BLAST of CmoCh13G000080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV42_CUCSA3.2e-2675.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1[more]
I3T9P9_LOTJA6.3e-2267.74Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A067LEU7_JATCU7.7e-2062.37Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17330 PE=4 SV=1[more]
A0A061GYY4_THECC2.9e-1964.13Methyltransferase-related protein, putative OS=Theobroma cacao GN=TCM_042267 PE=... [more]
W9SAE2_9ROSA3.8e-1964.58Uncharacterized protein OS=Morus notabilis GN=L484_010690 PE=4 SV=1[more]
BLAST of CmoCh13G000080 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58375.19.3e-1756.52 Methyltransferase-related protein[more]
AT5G18150.12.0e-1138.20 Methyltransferase-related protein[more]
AT5G14602.11.4e-0942.17 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CmoCh13G000080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208790|gb|KGN63886.1|4.6e-2675.00hypothetical protein Csa_1G025180 [Cucumis sativus][more]
gi|659107022|ref|XP_008453499.1|2.3e-2573.91PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo][more]
gi|388522359|gb|AFK49241.1|9.0e-2267.74unknown [Lotus japonicus][more]
gi|802540798|ref|XP_012078343.1|1.1e-1962.37PREDICTED: uncharacterized protein LOC105639013 [Jatropha curcas][more]
gi|590591550|ref|XP_007017049.1|4.2e-1964.13Methyltransferase-related protein, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G000080.1CmoCh13G000080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34132FAMILY NOT NAMEDcoord: 2..89
score: 1.6
NoneNo IPR availablePANTHERPTHR34132:SF2SUBFAMILY NOT NAMEDcoord: 2..89
score: 1.6