Carg07020 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07020
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Methyltransferase-related protein
Location	Cucurbita_argyrosperma_scaffold_065 : 959385 .. 959821 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTCTCTCTCTCCATCATTCAGATCCAGAGGTTACCGAGGAAGCCAGGGCGTTGAAAAAAATGTGTCCCCTGAGATTTATTCTCATATTTCTCTCTGCGACTCTTGCCGGCTTCTTCGTTCTCCGTAACATCAAATCGCAACCTCAAGATTTCGAAACCGAGGATAATTCCGATGCGCATTCTAACGATTTGTCTTCCAATTCCACCTCCTCCAAGGTTCTTCTTCCGATTCTGTCTTCTTTTTCCTTTTTGTTTGACTCTTTGTTTGTTTGTTTGTTTGTTTGTTTGTCTGAATGGAACGATTGTGGATTGTTTGAACAGGTGACTTCGGCTATGCAATCTGGATTCTGGACGGTGGTCGACATGGCTAGCGGCCGCTACTTGTGGAGGAATTTGTTTCCGTCGTCTCAGAAGCGTTCCGATTGA

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTCCATCATTCAGATCCAGAGGTTACCGAGGAAGCCAGGGCGTTGAAAAAAATGTGTCCCCTGAGATTTATTCTCATATTTCTCTCTGCGACTCTTGCCGGCTTCTTCGTTCTCCGTAACATCAAATCGCAACCTCAAGATTTCGAAACCGAGGATAATTCCGATGCGCATTCTAACGATTTGTCTTCCAATTCCACCTCCTCCAAGGTGACTTCGGCTATGCAATCTGGATTCTGGACGGTGGTCGACATGGCTAGCGGCCGCTACTTGTGGAGGAATTTGTTTCCGTCGTCTCAGAAGCGTTCCGATTGA

Coding sequence (CDS)

ATGTGTCCCCTGAGATTTATTCTCATATTTCTCTCTGCGACTCTTGCCGGCTTCTTCGTTCTCCGTAACATCAAATCGCAACCTCAAGATTTCGAAACCGAGGATAATTCCGATGCGCATTCTAACGATTTGTCTTCCAATTCCACCTCCTCCAAGGTGACTTCGGCTATGCAATCTGGATTCTGGACGGTGGTCGACATGGCTAGCGGCCGCTACTTGTGGAGGAATTTGTTTCCGTCGTCTCAGAAGCGTTCCGATTGA

Protein sequence

MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAHSNDLSSNSTSSKVTSAMQSGFWTVVDMASGRYLWRNLFPSSQKRSD

Homology

[Close]

BLAST of Carg07020 vs. NCBI nr
Match: XP_022949071.1 (uncharacterized protein LOC111452533 [Cucurbita moschata])

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-29
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAXXXXXXXXXXXXXXXXAMQSG 60
          MCPLRFILIFLSATLAGFFVLRNIKSQPQDFE EDNSDA XXXXXXXXXXXXXXXAMQSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFEAEDNSDAHXXXXXXXXXXXXXXXAMQSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWTVVDMASGRYLWRNLFPSSQKRSD
Sbjct: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 86

[Close]

BLAST of Carg07020 vs. NCBI nr
Match: XP_023525661.1 (uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAXXXXXXXXXXXXXXXXAMQSG 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE +DNSDA  XXXXXXXXXXXXXXAMQSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSDAHSXXXXXXXXXXXXXXAMQSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWTVVDMASGRYLWR+LFPSSQKRSD
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSQKRSD 86

[Close]

BLAST of Carg07020 vs. NCBI nr
Match: XP_022997733.1 (uncharacterized protein LOC111492605 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 9.0e-28
Identity = 79/86 (91.86%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1   MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAXXXXXXXXXXXXXXXXAMQSG 60
           MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE ++NSDA  XXXXXXXXXXXXXXAMQSG
Sbjct: 68  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADENSDAHSXXXXXXXXXXXXXXAMQSG 127

Query: 61  FWTVVDMASGRYLWRNLFPSSQKRSD 87
           FWTVVDMASGRYLWR+LFPSSQKRSD
Sbjct: 128 FWTVVDMASGRYLWRHLFPSSQKRSD 153

[Close]

BLAST of Carg07020 vs. NCBI nr
Match: XP_023519406.1 (uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 76/94 (80.85%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDA--------XXXXXXXXXXXXX 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDFE +DNS+         XXXXXXXXXXXXX
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEADDNSETHXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXAMQSGFWTVVDMASGRYLWRNLFPSSQKRSD 87
          XXXAMQSGFWTVVDMASGRYLWR+L PSS+K S+
Sbjct: 61 XXXAMQSGFWTVVDMASGRYLWRHLMPSSKKPSN 94

[Close]

BLAST of Carg07020 vs. NCBI nr
Match: XP_008453499.1 (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 59/86 (68.60%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAXXXXXXXXXXXXXXXXAMQSG 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDF   DNSD                  + SG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSD--DSSKELDSSDSTSCSKVSSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWTVVDMASGRYLWR+LFPSS+K SD
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of Carg07020 vs. TAIR10
Match: AT5G58375.1 (Methyltransferase-related protein)

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-17
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAXXXXXXXXXXXXXXXXAMQSG 60
          MCPLR ILIFLSATLAGFFVL+ + S   D   +  +DA                AM+SG
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKVGMAMKSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRS 86
          FWT VDMASGRYLW NL  ++++ S
Sbjct: 61 FWTCVDMASGRYLWNNLCSNAKRSS 85

[Close]

BLAST of Carg07020 vs. TAIR10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 70.9 bits (172), Expect = 4.4e-13
Identity = 37/83 (44.58%), Postives = 44/83 (53.01%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAXXXXXXXXXXXXXXXXAMQSG 60
          MCPLRF+L+F SA LAG+   R + S P+ F     SD                  M +G
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELF-----SDELLQAEAKEKQGLDFKRKMDNG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQK 84
           WT VDMASGRYLWRNL    Q+
Sbjct: 61 LWTFVDMASGRYLWRNLKEMRQR 78

[Close]

BLAST of Carg07020 vs. TAIR10
Match: AT5G18150.1 (Methyltransferase-related protein)

HSP 1 Score: 70.1 bits (170), Expect = 7.6e-13
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAXXXXXXXXXXXXXXXXAMQSG 60
          MCP+RF+L+F SA LAG+F  + + S P +F++ D  +                  M++G
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSP-EFDSPDELN--------EKQELNLKKKMENG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQK 84
          FW  VDMASGRYLWRNL    +K
Sbjct: 61 FWVFVDMASGRYLWRNLKEMREK 74

[Close]

BLAST of Carg07020 vs. TrEMBL
Match: tr|A0A1S3BWD8|A0A1S3BWD8_CUCME (uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 59/86 (68.60%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAXXXXXXXXXXXXXXXXAMQSG 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDF   DNSD                  + SG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSD--DSSKELDSSDSTSCSKVSSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWTVVDMASGRYLWR+LFPSS+K SD
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of Carg07020 vs. TrEMBL
Match: tr|A0A0A0LV42|A0A0A0LV42_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.9e-22
Identity = 58/86 (67.44%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDAXXXXXXXXXXXXXXXXAMQSG 60
          MCPLRFILIFLSATLAGFFVLRN+KSQPQDF   DNSD                  + SG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSD--DNSNEFDSSDSSSCSKVSSG 60

Query: 61 FWTVVDMASGRYLWRNLFPSSQKRSD 87
          FWT+VDMASGRYLWR+LFPSS+K SD
Sbjct: 61 FWTLVDMASGRYLWRHLFPSSKKPSD 84

[Close]

BLAST of Carg07020 vs. TrEMBL
Match: tr|I3T9P9|I3T9P9_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.3e-18
Identity = 64/92 (69.57%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQDFETEDNSDA-------XXXXXXXXXXXXXX 60
          MCPLRFILIFLSATLAGFFVLRN++SQP   + + N +        XXXXXXXXXXXXX 
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPHPTDLDQNDEGNTEXXXXXXXXXXXXXXXXXV 60

Query: 61 XXAMQSGFWTVVDMASGRYLWRNLFPSSQKRS 86
            A++SGFWT+VDMASGRYLWR L PSS KRS
Sbjct: 61 RVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

[Close]

BLAST of Carg07020 vs. TrEMBL
Match: tr|A0A2P6QKQ0|A0A2P6QKQ0_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0072461 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-17
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 1   MCPLRFILIFLSATLAGFFVLRNIKSQ-PQDFETEDNSDAXXXXXXXXXXXXXXXXAMQS 60
           MCPLRFIL+FLSATLAGFF+LRN+KS+ PQ   T+D++                  AM+S
Sbjct: 63  MCPLRFILVFLSATLAGFFLLRNLKSEPPQLTPTDDDTHLEINPKNSPNRFSKVCSAMES 122

Query: 61  GFWTVVDMASGRYLWRNLFPSSQKRSD 87
           GFWT VDMASGRYLWR+L  SS K +D
Sbjct: 123 GFWTFVDMASGRYLWRHLVTSSSKSTD 149

[Close]

BLAST of Carg07020 vs. TrEMBL
Match: tr|W9SAE2|W9SAE2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010690 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-17
Identity = 52/94 (55.32%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 1  MCPLRFILIFLSATLAGFFVLRNIKSQPQD--------FETEDNSDAXXXXXXXXXXXXX 60
          MCPLR ILIFLSATLAGFFVLRN+KSQP+          E  D S+              
Sbjct: 1  MCPLRIILIFLSATLAGFFVLRNLKSQPESQFPSGDETHENLDESEKTKLPNSTTSPFSK 60

Query: 61 XXXAMQSGFWTVVDMASGRYLWRNLFPSSQKRSD 87
             AM+SGFWT VDMASGRYLWR+L  S+ KRS+
Sbjct: 61 VCSAMESGFWTCVDMASGRYLWRHLVSSNSKRSE 94

The following BLAST results are available for this feature:

BLAST of Carg07020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949071.1	2.1e-29	97.67	uncharacterized protein LOC111452533 [Cucurbita moschata]	[more]
XP_023525661.1	3.1e-28	93.02	uncharacterized protein LOC111789199 [Cucurbita pepo subsp. pepo]	[more]
XP_022997733.1	9.0e-28	91.86	uncharacterized protein LOC111492605 [Cucurbita maxima]	[more]
XP_023519406.1	1.5e-22	80.85	uncharacterized protein LOC111782825 [Cucurbita pepo subsp. pepo]	[more]
XP_008453499.1	3.3e-22	68.60	PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo]	[more]

BLAST of Carg07020 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58375.1	3.0e-17	51.76	Methyltransferase-related protein	[more]
AT5G14602.1	4.4e-13	44.58	FUNCTIONS IN: molecular_function unknown	[more]
AT5G18150.1	7.6e-13	42.17	Methyltransferase-related protein	[more]

BLAST of Carg07020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BWD8\|A0A1S3BWD8_CUCME	2.2e-22	68.60	uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=...	[more]
tr\|A0A0A0LV42\|A0A0A0LV42_CUCSA	4.9e-22	67.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1	[more]
tr\|I3T9P9\|I3T9P9_LOTJA	7.3e-18	69.57	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
tr\|A0A2P6QKQ0\|A0A2P6QKQ0_ROSCH	2.1e-17	57.47	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0072461 PE=4...	[more]
tr\|W9SAE2\|W9SAE2_9ROSA	2.8e-17	55.32	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010690 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07020-RA	Carg07020-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 1..84
None	No IPR available	PANTHER	PTHR34132:SF2	SUBFAMILY NOT NAMED	coord: 1..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07020	Cla008117	Watermelon (97103) v1	carwmB0517
Carg07020	Csa1G533620	Cucumber (Chinese Long) v2	carcuB0548
Carg07020	MELO3C020504	Melon (DHL92) v3.5.1	carmeB0524
Carg07020	ClCG03G000250	Watermelon (Charleston Gray)	carwcgB0506
Carg07020	CSPI01G24360	Wild cucumber (PI 183967)	carcpiB0555
Carg07020	Cucsa.151950	Cucumber (Gy14) v1	carcgyB0601
Carg07020	CmaCh01G007230	Cucurbita maxima (Rimu)	carcmaB0731
Carg07020	CmaCh13G000170	Cucurbita maxima (Rimu)	carcmaB0728
Carg07020	CmoCh13G000080	Cucurbita moschata (Rifu)	carcmoB0705
Carg07020	Lsi02G012290	Bottle gourd (USVL1VR-Ls)	carlsiB475
Carg07020	Cp4.1LG02g11350	Cucurbita pepo (Zucchini)	carcpeB0738
Carg07020	CsGy1G023850	Cucumber (Gy14) v2	carcgybB0524
Carg07020	CsaV3_1G036660	Cucumber (Chinese Long) v3	carcucB0553
Carg07020	Cla97C03G051060	Watermelon (97103) v2	carwmbB0547
Carg07020	Bhi08G000366	Wax gourd	carwgoB0632

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07020	Carg26962	Silver-seed gourd	carcarB350

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07020	Bottle gourd (USVL1VR-Ls)	carlsiB472
Carg07020	Melon (DHL92) v3.5.1	carmeB0522
Carg07020	Melon (DHL92) v3.6.1	carmedB0528
Carg07020	Watermelon (Charleston Gray)	carwcgB0504
Carg07020	Watermelon (97103) v1	carwmB0515
Carg07020	Watermelon (97103) v2	carwmbB0544
Carg07020	Watermelon (97103) v2	carwmbB0545
Carg07020	Wax gourd	carwgoB0630
Carg07020	Cucumber (Gy14) v2	carcgybB0526
Carg07020	Cucumber (Gy14) v1	carcgyB0597
Carg07020	Cucurbita moschata (Rifu)	carcmoB0708
Carg07020	Cucurbita pepo (Zucchini)	carcpeB0737
Carg07020	Wild cucumber (PI 183967)	carcpiB0556
Carg07020	Cucumber (Chinese Long) v2	carcuB0549
Carg07020	Cucumber (Chinese Long) v3	carcucB0555