CSPI01G24360 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G24360
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionMethyltransferase-related protein, putative
LocationChr1 : 19678452 .. 19679341 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTGGCATTGGCATGGAATTTTCTAACTATTTAATATTTCCCTTCACTTCCACTCCATTTGGAGATTAAGAACCTAAAGGAAGGAAGAAAGGCCCCATAGAAAATGTGTCCGCTGAGATTGATTCTCATATTTCTCTCAGCGACTCTTGCAGGCTTCTTCCTTATCCGTAACCTCAAATCTCCCTCTCAAGATTTCCACGCCGATGACCATACTTCCGATTCCAATTCCTCTTCATCCCCCAACTCCAACAAGGTCCTTCTTTCTCTCTCTTCTAATACAATTCTTTTTTAATTTCTTCCATTTCAATATCAAATCTTTCTTTCATTAATTGGTGTGTACGTACGTGCTGTATATATATATATGTTTGAACAGATCTCATCGGGGTTCTGGACGGTGGTAGATATGGCTTCCGGTCGCTACTTATGGAGGCATTTGTTTTCGTCGTCGTCGTCGGAGAAGGCTTCCGATTGATGGATATGATGAATTGTGTTTGGGAGAGGGGTTAGGGGTTAGGGGTTAAGGGTTTTGTTTGGATTAATTGTATCTTCTCCTTGTATATCTTCATTGTTCCGATCCCTTTAATTTCCACCCCTCTTCTTCCCTTCCTATCCAATTACTATATGTATTCAAACTGTTCACAAATGCTTGATCGCTATTGCTTACGATTACAATTGGGATTTTCTTAAGAAACAGATCAAACTGAGGGTTTTGAAGATACAATAGACACGATGAATGAATCAATCAATCCAATTATTGAATTCCTGCAAGTGCCGAGATCAGGCTTCGTAATTAAATTAAATTAAATTAAAGTTAAATTTAATTTGGGTTTAGGGTAACCCAAAGTTGAGAAAAGTCTTCTGATGTTGCGGTGAAATCGAGACTTGTGGA

mRNA sequence

ATGTGTCCGCTGAGATTGATTCTCATATTTCTCTCAGCGACTCTTGCAGGCTTCTTCCTTATCCGTAACCTCAAATCTCCCTCTCAAGATTTCCACGCCGATGACCATACTTCCGATTCCAATTCCTCTTCATCCCCCAACTCCAACAAGATCTCATCGGGGTTCTGGACGGTGGTAGATATGGCTTCCGGTCGCTACTTATGGAGGCATTTGTTTTCGTCGTCGTCGTCGGAGAAGGCTTCCGATTGA

Coding sequence (CDS)

ATGTGTCCGCTGAGATTGATTCTCATATTTCTCTCAGCGACTCTTGCAGGCTTCTTCCTTATCCGTAACCTCAAATCTCCCTCTCAAGATTTCCACGCCGATGACCATACTTCCGATTCCAATTCCTCTTCATCCCCCAACTCCAACAAGATCTCATCGGGGTTCTGGACGGTGGTAGATATGGCTTCCGGTCGCTACTTATGGAGGCATTTGTTTTCGTCGTCGTCGTCGGAGAAGGCTTCCGATTGA
Homology
[Close]
BLAST of CSPI01G24360 vs. TrEMBL
Match: A0A0A0LVB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533620 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-35
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVD 60
          MCPLRLILIFLSATLAGF LIRNLKSPSQDFHADDHT DSNSSSSPNSNKISSGFWTVVD
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD 60

Query: 61 MASGRYLWRHLFSSSSSEKASD 83
          MASGRYLWRHLFSSSSSEKASD
Sbjct: 61 MASGRYLWRHLFSSSSSEKASD 82

[Close]
BLAST of CSPI01G24360 vs. TrEMBL
Match: A0A0A0LV42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-20
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDF----HADDHTSDSNSSSSPNSNKISSGFW 60
          MCPLR ILIFLSATLAGFF++RNLKS  QDF    ++DD++++ +SS S + +K+SSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TVVDMASGRYLWRHLFSSSSSEKASD 83
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TLVDMASGRYLWRHLF--PSSKKPSD 84

[Close]
BLAST of CSPI01G24360 vs. TrEMBL
Match: V4SWS0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002982mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-16
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHAD-----DHTSDSNSSSSPNSN---KIS 60
          MCPLRLILIFLSATLAGFF+IRNLKSP Q    D     D ++D+  + SP S     + 
Sbjct: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALE 60

Query: 61 SGFWTVVDMASGRYLWRHLFSSS 76
          SGFWT VDMASG+YLWRHL SSS
Sbjct: 61 SGFWTFVDMASGKYLWRHLGSSS 83

[Close]
BLAST of CSPI01G24360 vs. TrEMBL
Match: A0A067E3Z4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034691mg PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-16
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHAD-----DHTSDSNSSSSPNSN---KIS 60
          MCPLRLILIFLSATLAGFF+IRNLKSP Q    D     D ++D+  + SP S     + 
Sbjct: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALE 60

Query: 61 SGFWTVVDMASGRYLWRHLFSSS 76
          SGFWT VDMASG+YLWRHL SSS
Sbjct: 61 SGFWTFVDMASGKYLWRHLGSSS 83

[Close]
BLAST of CSPI01G24360 vs. TrEMBL
Match: A0A061GYY4_THECC (Methyltransferase-related protein, putative OS=Theobroma cacao GN=TCM_042267 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.9e-16
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNS--------NKIS 60
          MCPLRLILIFLSATLAGFF+IRNLKS  Q    D+  +++N +   NS          I 
Sbjct: 1  MCPLRLILIFLSATLAGFFVIRNLKSQPQANDEDEPQTNTNINEDDNSLSAFSKVRTAIE 60

Query: 61 SGFWTVVDMASGRYLWRHLFSSSS 77
          SGFWT VDMASGRYLWRHL SS+S
Sbjct: 61 SGFWTCVDMASGRYLWRHLVSSNS 84

[Close]
BLAST of CSPI01G24360 vs. TAIR10
Match: AT5G58375.1 (AT5G58375.1 Methyltransferase-related protein)

HSP 1 Score: 77.4 bits (189), Expect = 4.6e-15
Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQD---------FHADDHTSDSNSSSSPNSNKI 60
          MCPLRLILIFLSATLAGFF+++ L S S D          HADD   DS S  S     +
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADD---DSVSGFSKVGMAM 60

Query: 61 SSGFWTVVDMASGRYLWRHLFSSS 76
           SGFWT VDMASGRYLW +L S++
Sbjct: 61 KSGFWTCVDMASGRYLWNNLCSNA 81

[Close]
BLAST of CSPI01G24360 vs. TAIR10
Match: AT5G18150.1 (AT5G18150.1 Methyltransferase-related protein)

HSP 1 Score: 60.5 bits (145), Expect = 5.8e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVD 60
          MCP+R +L+F SA LAG+F  + + S S +F + D  ++    +     K+ +GFW  VD
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSS-SPEFDSPDELNEKQELNL--KKKMENGFWVFVD 60

Query: 61 MASGRYLWRHL 72
          MASGRYLWR+L
Sbjct: 61 MASGRYLWRNL 68

[Close]
BLAST of CSPI01G24360 vs. TAIR10
Match: AT5G14602.1 (AT5G14602.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 57.4 bits (137), Expect = 4.9e-09
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPN-SNKISSGFWTVV 60
          MCPLR +L+F SA LAG+   R + S  + F  +   +++      +   K+ +G WT V
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEAKEKQGLDFKRKMDNGLWTFV 60

Query: 61 DMASGRYLWRHL 72
          DMASGRYLWR+L
Sbjct: 61 DMASGRYLWRNL 72

[Close]
BLAST of CSPI01G24360 vs. NCBI nr
Match: gi|700210759|gb|KGN65855.1| (hypothetical protein Csa_1G533620 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 4.9e-35
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVD 60
          MCPLRLILIFLSATLAGF LIRNLKSPSQDFHADDHT DSNSSSSPNSNKISSGFWTVVD
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD 60

Query: 61 MASGRYLWRHLFSSSSSEKASD 83
          MASGRYLWRHLFSSSSSEKASD
Sbjct: 61 MASGRYLWRHLFSSSSSEKASD 82

[Close]
BLAST of CSPI01G24360 vs. NCBI nr
Match: gi|659107022|ref|XP_008453499.1| (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSN----SSSSPNSNKISSGFW 60
          MCPLR ILIFLSATLAGFF++RNLKS  QDF A D++ DS+    SS S + +K+SSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTSCSKVSSGFW 60

Query: 61 TVVDMASGRYLWRHLFSSSSSEKASD 83
          TVVDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TVVDMASGRYLWRHLF--PSSKKPSD 84

[Close]
BLAST of CSPI01G24360 vs. NCBI nr
Match: gi|700208790|gb|KGN63886.1| (hypothetical protein Csa_1G025180 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 3.4e-20
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDF----HADDHTSDSNSSSSPNSNKISSGFW 60
          MCPLR ILIFLSATLAGFF++RNLKS  QDF    ++DD++++ +SS S + +K+SSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TVVDMASGRYLWRHLFSSSSSEKASD 83
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TLVDMASGRYLWRHLF--PSSKKPSD 84

[Close]
BLAST of CSPI01G24360 vs. NCBI nr
Match: gi|1000969250|ref|XP_015573838.1| (PREDICTED: uncharacterized protein LOC8282736 [Ricinus communis])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVD 60
          MCPLRLILIFLSAT+AGFFL+RNLKS   D  +DD  SDS++  S   + I SGFWT VD
Sbjct: 1  MCPLRLILIFLSATVAGFFLVRNLKSSPND--SDDPQSDSSTDDSKVRSAIKSGFWTTVD 60

Query: 61 MASGRYLWRHLFSSSSSEKA 81
          MASGRYLWRHL SSSSS  +
Sbjct: 61 MASGRYLWRHLVSSSSSSSS 78

[Close]
BLAST of CSPI01G24360 vs. NCBI nr
Match: gi|1021550005|ref|XP_016166392.1| (PREDICTED: uncharacterized protein LOC107609081 [Arachis ipaensis])

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-16
Identity = 54/89 (60.67%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 1  MCPLRLILIFLSATLAGFFLIRNLKS--PSQDFHADDHTSD-------SNSSSSPNSNKI 60
          MCPLR+ILIFLSATLAGFFL+RN++S  P  D H DD   D       SNSSSS   + I
Sbjct: 1  MCPLRVILIFLSATLAGFFLLRNIRSQPPQLDNHDDDDDDDSTQNSHSSNSSSSKIGSAI 60

Query: 61 SSGFWTVVDMASGRYLWRHLFSSSSSEKA 81
          +SGFWT+VDMASGRYLWRH    SS++ +
Sbjct: 61 NSGFWTLVDMASGRYLWRHRHLVSSTQSS 89

The following BLAST results are available for this feature:
BLAST of CSPI01G24360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G24360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVB2_CUCSA3.4e-3597.56Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533620 PE=4 SV=1[more]
A0A0A0LV42_CUCSA2.4e-2066.28Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025180 PE=4 SV=1[more]
V4SWS0_9ROSI2.1e-1663.86Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002982mg PE=4 SV=1[more]
A0A067E3Z4_CITSI2.1e-1663.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034691mg PE=4 SV=1[more]
A0A061GYY4_THECC7.9e-1661.90Methyltransferase-related protein, putative OS=Theobroma cacao GN=TCM_042267 PE=... [more]
BLAST of CSPI01G24360 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58375.14.6e-1557.14 Methyltransferase-related protein[more]
AT5G18150.15.8e-1045.07 Methyltransferase-related protein[more]
AT5G14602.14.9e-0943.06 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CSPI01G24360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210759|gb|KGN65855.1|4.9e-3597.56hypothetical protein Csa_1G533620 [Cucumis sativus][more]
gi|659107022|ref|XP_008453499.1|1.2e-2069.77PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo][more]
gi|700208790|gb|KGN63886.1|3.4e-2066.28hypothetical protein Csa_1G025180 [Cucumis sativus][more]
gi|1000969250|ref|XP_015573838.1|1.1e-1868.75PREDICTED: uncharacterized protein LOC8282736 [Ricinus communis][more]
gi|1021550005|ref|XP_016166392.1|1.3e-1660.67PREDICTED: uncharacterized protein LOC107609081 [Arachis ipaensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G24360.1CSPI01G24360.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34132FAMILY NOT NAMEDcoord: 2..82
score: 2.0
NoneNo IPR availablePANTHERPTHR34132:SF2SUBFAMILY NOT NAMEDcoord: 2..82
score: 2.0