Csa1G043080 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G043080
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRING finger protein 181; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
LocationChr1 : 4719494 .. 4721065 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACACAGCAAAGAACAACGTTGAAAAACAACACAGAGAGGAAAATAGAGAGGAGAGGAATGAACAGACTATTGGAAGAAGAAGCAGTTGATGAGATTATTTCATTTGCCTCCGACTTCCCTTCCCATGAGGATGATGCCGTAGATCTTCTCCTGGATTTCATCACAAACGAGCATACATCAAGTACTTACATTTTTCTTTTAAAATGTTAATCCATGCTACATAGTTAAATTTATCTTGCTTTTTAGTTATTGGATCGGATGATTTAAAATAATATTAGAGCATGTTGGTTTAAGAGATCGTGCGCTCAAACCCAATCTTATTTTTTTCGACTTTTAGATGAATAGATGATTTAAGGCGGATTGTCCAAAATTGAGATGGCTAGAAATTTTGGTGAATAATATATGTTTTGACAAATATTCTTATAATTGAAGAGAAACAAATTAGTTTGTGCATTTGTATTATCAAATATTTTTCAATTCTTTGTTGATTGGGTGATTTTTCTTTTTCTTCTTTTTTTTGCTAGATGGAGCTCTAGCAATAGATATGAATTTAGTTCATTGGGCAATTAACCATTTACGTGCTGCCGATGCTGTCGTCGATGTTACCAATAGTGTCAGTTCAACACAACAGGTGATTTTCATTGATTTTTTTGGAACGATGGAATGGTTTAAGTCCAAACTTAATAATCAACAAGATATAAAATAGATTTTCTGACAACTCACAAATAAATAGCTGAGTTCCGACTTTCGTTTTCTAAAAGTGAGAGATTGTTTGGTTCACCAAATGAAGTTAATAAATCTAAGTTAATCTATCCCATTTAATTAGTTTGTCAAATTGTAATATGGAATTTCTAATAAAGGTGAGTTTCAATAGTGTTTAATATTAAAATTGAATTGTTTACCCAAACTCAATAATTGAGCCAAACAACTCTATACAACCATAGTAATTATAATTGATAACGGTTTTAAAAATAATAATTAAGATTTTTTTTCAATCCATAATAATTTTTATGATATTATTAAAGTATATTTAACATTTAAAAGATTTACAAACATTGCGCATTTAAGTTTTTAAAATTACACTAAGAATTCATAAAATTTCAAATTTTATAGTAATTTTAAAAAAATTAAAAAATGATATACTAAATTTTCTAATTACCTCTATTTTTCTCGGAAACTAATATGCAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG

mRNA sequence

ATGGAAACACAGCAAAGAACAACGTTGAAAAACAACACAGAGAGGAAAATAGAGAGGAGAGGAATGAACAGACTATTGGAAGAAGAAGCAGTTGATGAGATTATTTCATTTGCCTCCGACTTCCCTTCCCATGAGGATGATGCCGTAGATCTTCTCCTGGATTTCATCACAAACGAGCATACATCAAATGGAGCTCTAGCAATAGATATGAATTTAGTTCATTGGGCAATTAACCATTTACGTGCTGCCGATGCTGTCGTCGATGTTACCAATAGTGTCAGTTCAACACAACAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG

Coding sequence (CDS)

ATGGAAACACAGCAAAGAACAACGTTGAAAAACAACACAGAGAGGAAAATAGAGAGGAGAGGAATGAACAGACTATTGGAAGAAGAAGCAGTTGATGAGATTATTTCATTTGCCTCCGACTTCCCTTCCCATGAGGATGATGCCGTAGATCTTCTCCTGGATTTCATCACAAACGAGCATACATCAAATGGAGCTCTAGCAATAGATATGAATTTAGTTCATTGGGCAATTAACCATTTACGTGCTGCCGATGCTGTCGTCGATGTTACCAATAGTGTCAGTTCAACACAACAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG

Protein sequence

METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEHTSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT*
Homology
[Close]
BLAST of Csa1G043080 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E     KQ
Sbjct: 175 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSDVKQ 234

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CR++LPT
Sbjct: 235 MPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]
BLAST of Csa1G043080 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.9e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDV-FTAKDFSSSW-VCGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I+ALP V  T  + +S +  C VC+ D+ E    AKQ
Sbjct: 183 IQQLAENDPNRYGTPP--ASKSAIEALPLVNITKSNLNSEFNQCAVCM-DDFEEGTEAKQ 242

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH++H  C++ WLEL NSCP+CR++LPT
Sbjct: 243 MPCKHLYHKDCLLPWLELHNSCPVCRHELPT 270

[Close]
BLAST of Csa1G043080 vs. Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-12
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 150 PFRASKSTIQALPDVFTAKDFSSSWV-CGVCLNDEIEANDGAKQLPCKHIFHTHCIISWL 209
           P  A+K+ +Q+LP V  + + +   V C VCL  E E  +  +++PCKH+FHT CI+ WL
Sbjct: 52  PPPAAKAVVQSLPVVIISPEQADKGVKCPVCLL-EFEEQESVREMPCKHLFHTGCILPWL 111

Query: 210 ELCNSCPLCRYQLPT 224
              NSCPLCR +LPT
Sbjct: 112 NKTNSCPLCRLELPT 125

[Close]
BLAST of Csa1G043080 vs. Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-12
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 150 PFRASKSTIQALPDV-FTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWL 209
           P  ASK  +++LP V  T +   ++  C VCL  E E  +  +QLPC+H+FH+ CI+ WL
Sbjct: 52  PPPASKKVVESLPKVTVTPEQADAALKCPVCLL-EFEEGETVRQLPCEHLFHSACILPWL 111

Query: 210 ELCNSCPLCRYQLPT 224
              NSCPLCR++LPT
Sbjct: 112 GKTNSCPLCRHELPT 125

[Close]
BLAST of Csa1G043080 vs. Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-12
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1 

Query: 150 PFRASKSTIQALPDV-FTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWL 209
           P  A+K  +++LP V  T +   ++  C VCL  E E  +  +QLPC+H+FH+ CI+ WL
Sbjct: 52  PPPAAKKVVESLPKVTVTPEQADAALKCPVCLL-EFEEGETVRQLPCEHLFHSSCILPWL 111

Query: 210 ELCNSCPLCRYQLPT 224
              NSCPLCR++LPT
Sbjct: 112 GKTNSCPLCRHELPT 125

[Close]
BLAST of Csa1G043080 vs. TrEMBL
Match: A0A0A0LQL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043080 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.5e-125
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60
           METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH
Sbjct: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60

Query: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120
           TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN
Sbjct: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120

Query: 121 DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL 180
           DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL
Sbjct: 121 DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL 180

Query: 181 NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
Sbjct: 181 NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 223

[Close]
BLAST of Csa1G043080 vs. TrEMBL
Match: A0A022PND4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008418mg PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS ++ LPD+   ++   S S  C VC  D  E N+ AKQ
Sbjct: 187 IQQLAENDPNRYGTPP--ASKSVVEGLPDITITQEMLTSDSSQCAVC-KDSFELNEAAKQ 246

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH++H  CI+ WLEL NSCP+CRY+LPT
Sbjct: 247 IPCKHLYHKDCIVPWLELHNSCPVCRYELPT 274

[Close]
BLAST of Csa1G043080 vs. TrEMBL
Match: A0A022Q503_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006235mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.8e-15
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS ++ LPD+    +   S S  C VC  D  E N+ AKQ
Sbjct: 257 IQQLAENDPNRYGTPP--ASKSVVEGLPDIKITAEMLASDSSQCAVC-KDSFELNEEAKQ 316

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKHI+H  CI+ WLEL NSCP+CRY+LPT
Sbjct: 317 IPCKHIYHKDCILPWLELHNSCPVCRYELPT 344

[Close]
BLAST of Csa1G043080 vs. TrEMBL
Match: A0A0K9QXJ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135340 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.2e-15
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 194
           ++QL+ ND + H   P  ASK  I  LP+V    D   S S  C VC+N E E +   KQ
Sbjct: 173 IQQLAENDPNRHGTPP--ASKEAIDDLPNVVITADVVNSDSNSCAVCMN-EFEVDSSVKQ 232

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH+ C+I WL+L NSCP+CRY+LPT
Sbjct: 233 MPCKHLFHSECLIPWLQLHNSCPVCRYELPT 260

[Close]
BLAST of Csa1G043080 vs. TrEMBL
Match: A0A078GHF9_BRANA (BnaC05g32760D protein OS=Brassica napus GN=BnaC05g32760D PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I+ LP V  +KD   S +  C VC+ DE E     KQ
Sbjct: 166 IQQLAENDPNRYGTPP--ASKSAIEGLPTVKVSKDMLKSEMNQCAVCM-DEFEDGGDVKQ 225

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CRY+LPT
Sbjct: 226 MPCKHVFHQDCLMPWLELHNSCPVCRYELPT 253

[Close]
BLAST of Csa1G043080 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 7.0e-18
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E     KQ
Sbjct: 175 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSDVKQ 234

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CR++LPT
Sbjct: 235 MPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]
BLAST of Csa1G043080 vs. TAIR10
Match: AT5G15820.1 (AT5G15820.1 RING/U-box superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-15
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 1 

Query: 84  DAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDL 143
           + V++   S+ S      L  ++  +    +DV    D +D      + A + Q+  N+ 
Sbjct: 199 EVVMEFAASIYSDAWEILLYDNMTNSAPMDLDVEVWLDSVDGYAPMDYNAIIGQMFDNET 258

Query: 144 SLHEGFPFRASKSTIQALPDV-FTAKDFSS-SWVCGVCLNDEIEANDGAKQLPCKHIFHT 203
            + +G P  ASKS +  LPDV  T ++ SS S VC +C  DE+   +  K+LPCKH +H 
Sbjct: 259 GI-KGTP-PASKSVVDGLPDVELTIEELSSVSIVCAIC-KDEVVFKEKVKRLPCKHYYHG 318

Query: 204 HCIISWLELCNSCPLCRYQLPT 224
            CII WL + N+CP+CR++LPT
Sbjct: 319 ECIIPWLGIRNTCPVCRHELPT 337

[Close]
BLAST of Csa1G043080 vs. TAIR10
Match: AT3G13430.1 (AT3G13430.1 RING/U-box superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 4.7e-14
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 194
           +++L+ NDL+   G P  A+K  ++AL  V   K   S   C VCL D+ E    AK++P
Sbjct: 188 LQRLAENDLNNRYGTP-PATKEAVEALAMV---KIEDSLLQCSVCL-DDFEIGMEAKEMP 247

Query: 195 CKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           CKH FH+ C++ WLEL +SCP+CRY LPT
Sbjct: 248 CKHKFHSDCLLPWLELHSSCPVCRYLLPT 271

[Close]
BLAST of Csa1G043080 vs. TAIR10
Match: AT4G26400.2 (AT4G26400.2 RING/U-box superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-14
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 194
           +  L+ ND   H   P R  K  +  LP V      S S  C +CL D+ +    AK++P
Sbjct: 206 LEHLADNDSIRHGSLPAR--KEVVDNLPTV----KISESLQCSICL-DDFDKGSEAKEMP 265

Query: 195 CKHIFHTHCIISWLELCNSCPLCRYQLP 223
           CKH FH  CI+ WLEL +SCP+CRY+LP
Sbjct: 266 CKHKFHIRCIVPWLELHSSCPVCRYELP 286

[Close]
BLAST of Csa1G043080 vs. TAIR10
Match: AT5G56340.1 (AT5G56340.1 RING/U-box superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-13
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 194
           ++ L+ ND +  +G P  A K  ++ALP V   +       C VCL D+ E    AK++P
Sbjct: 224 LQHLAENDPN-RQGTP-PARKEAVEALPTVKIMEPLQ----CSVCL-DDFEKGTEAKEMP 283

Query: 195 CKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           CKH FH  CI+ WLEL +SCP+CR++LP+
Sbjct: 284 CKHKFHVRCIVPWLELHSSCPVCRFELPS 305

[Close]
BLAST of Csa1G043080 vs. NCBI nr
Match: gi|700209109|gb|KGN64205.1| (hypothetical protein Csa_1G043080 [Cucumis sativus])

HSP 1 Score: 456.8 bits (1174), Expect = 2.1e-125
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60
           METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH
Sbjct: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60

Query: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120
           TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN
Sbjct: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120

Query: 121 DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL 180
           DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL
Sbjct: 121 DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL 180

Query: 181 NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
Sbjct: 181 NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 223

[Close]
BLAST of Csa1G043080 vs. NCBI nr
Match: gi|659068755|ref|XP_008446033.1| (PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 5.3e-84
Identity = 163/225 (72.44%), Postives = 181/225 (80.44%), Query Frame = 1 

Query: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60
           ME QQ  TL+ NT+RKIE RGMNRLLEEEAVDEI+SFASDFPSHED+AVDLLLD IT E 
Sbjct: 1   MEAQQIITLRTNTKRKIESRGMNRLLEEEAVDEILSFASDFPSHEDEAVDLLLDVITTEL 60

Query: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120
           TSN A  IDM+LVHWA+  LRAA+       S  ST Q+A  ESDILETRE +VD+TDSN
Sbjct: 61  TSNRARVIDMDLVHWAVTLLRAAN-----NTSADSTPQDANFESDILETRESIVDLTDSN 120

Query: 121 --DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGV 180
             DLLD DD ++WM HVRQLSL+DL  H  FPF ASKS IQALPDVF   DFSSSW C V
Sbjct: 121 VTDLLDDDDVDIWM-HVRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWACAV 180

Query: 181 CLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           C++DEI+A DGAKQLPC+HIFHTHCIISWLEL NSCPLCRY+LPT
Sbjct: 181 CMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCPLCRYKLPT 219

[Close]
BLAST of Csa1G043080 vs. NCBI nr
Match: gi|727414981|ref|XP_010508254.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E   G KQ
Sbjct: 178 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSGVKQ 237

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CRY+LPT
Sbjct: 238 MPCKHVFHQDCLLPWLELHNSCPVCRYELPT 265

[Close]
BLAST of Csa1G043080 vs. NCBI nr
Match: gi|727586242|ref|XP_010466163.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E   G KQ
Sbjct: 178 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSGVKQ 237

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CRY+LPT
Sbjct: 238 MPCKHVFHQDCLLPWLELHNSCPVCRYELPT 265

[Close]
BLAST of Csa1G043080 vs. NCBI nr
Match: gi|727633764|ref|XP_010487953.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E   G KQ
Sbjct: 174 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSGVKQ 233

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CRY+LPT
Sbjct: 234 MPCKHVFHQDCLLPWLELHNSCPVCRYELPT 261

The following BLAST results are available for this feature:
BLAST of Csa1G043080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNG1L_ARATH1.2e-1649.45E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RING1_GOSHI8.9e-1547.25E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RN181_DANRE1.1e-1246.67E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2[more]
RN181_XENLA3.2e-1246.67E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1[more]
RN181_XENTR5.4e-1245.33E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1[more]
BLAST of Csa1G043080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQL0_CUCSA1.5e-125100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043080 PE=4 SV=1[more]
A0A022PND4_ERYGU1.6e-1548.35Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008418mg PE=4 SV=1[more]
A0A022Q503_ERYGU4.8e-1549.45Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a006235mg PE=4 SV=1[more]
A0A0K9QXJ9_SPIOL6.2e-1549.45Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135340 PE=4 SV=1[more]
A0A078GHF9_BRANA1.1e-1449.45BnaC05g32760D protein OS=Brassica napus GN=BnaC05g32760D PE=4 SV=1[more]
BLAST of Csa1G043080 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.17.0e-1849.45 RING/U-box superfamily protein[more]
AT5G15820.14.3e-1535.21 RING/U-box superfamily protein[more]
AT3G13430.14.7e-1446.07 RING/U-box superfamily protein[more]
AT4G26400.26.1e-1443.18 RING/U-box superfamily protein[more]
AT5G56340.13.0e-1342.70 RING/U-box superfamily protein[more]
BLAST of Csa1G043080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209109|gb|KGN64205.1|2.1e-125100.00hypothetical protein Csa_1G043080 [Cucumis sativus][more]
gi|659068755|ref|XP_008446033.1|5.3e-8472.44PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo][more]
gi|727414981|ref|XP_010508254.1|1.1e-1551.65PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa][more]
gi|727586242|ref|XP_010466163.1|1.1e-1551.65PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa][more]
gi|727633764|ref|XP_010487953.1|1.1e-1551.65PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0019083 viral transcription
cellular_component GO:0005575 cellular_component
cellular_component GO:0031379 RNA-directed RNA polymerase complex
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0003968 RNA-directed RNA polymerase activity
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G043080.1Csa1G043080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 176..218
score: 3.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 176..217
score: 4.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 176..218
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 175..219
score: 9.1
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 153..223
score: 7.4
NoneNo IPR availablePANTHERPTHR22763:SF5E3 UBIQUITIN-PROTEIN LIGASE CIP8coord: 153..223
score: 7.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 175..221
score: 5.3