CsGy1G007350 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG ATGCAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG ATGCAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG MQNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
BLAST of CsGy1G007350 vs. NCBI nr
Match: KGN64205.1 (hypothetical protein Csa_1G043080 [Cucumis sativus]) HSP 1 Score: 270.0 bits (689), Expect = 4.1e-69 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of CsGy1G007350 vs. NCBI nr
Match: XP_008446033.1 (PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo]) HSP 1 Score: 200.3 bits (508), Expect = 4.0e-48 Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 0
BLAST of CsGy1G007350 vs. NCBI nr
Match: XP_018849298.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Juglans regia]) HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16 Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0
BLAST of CsGy1G007350 vs. NCBI nr
Match: XP_010508254.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]) HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16 Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0
BLAST of CsGy1G007350 vs. NCBI nr
Match: XP_010466163.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]) HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16 Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0
BLAST of CsGy1G007350 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein) HSP 1 Score: 90.9 bits (224), Expect = 6.1e-19 Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0
BLAST of CsGy1G007350 vs. TAIR10
Match: AT5G15820.1 (RING/U-box superfamily protein) HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15 Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0
BLAST of CsGy1G007350 vs. TAIR10
Match: AT3G13430.1 (RING/U-box superfamily protein) HSP 1 Score: 78.2 bits (191), Expect = 4.1e-15 Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of CsGy1G007350 vs. TAIR10
Match: AT4G26400.2 (RING/U-box superfamily protein) HSP 1 Score: 77.4 bits (189), Expect = 7.0e-15 Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of CsGy1G007350 vs. TAIR10
Match: AT5G56340.1 (RING/U-box superfamily protein) HSP 1 Score: 75.5 bits (184), Expect = 2.7e-14 Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0
BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17 Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0
BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 7.9e-16 Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0
BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|Q7ZW78|RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2) HSP 1 Score: 77.4 bits (189), Expect = 1.3e-13 Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0
BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.7e-13 Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 0
BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|Q6GPV5|RN181_XENLA (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.7e-13 Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0
BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A0A0LQL0|A0A0A0LQL0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043080 PE=4 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 2.7e-69 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A1S3BES6|A0A1S3BES6_CUCME (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucumis melo OX=3656 GN=LOC103488881 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.6e-48 Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 0
BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A2I4GZI1|A0A2I4GZI1_9ROSI (E3 ubiquitin-protein ligase RING1-like OS=Juglans regia OX=51240 GN=LOC109012220 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 7.0e-17 Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0
BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A022PND4|A0A022PND4_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a008418mg PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16 Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 0
BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A2N9GU74|A0A2N9GU74_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30945 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16 Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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