CsGy1G007350 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G007350
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ERAD-associated E3 ubiquitin-protein ligase HRD1-like
Location	Chr1 : 4712156 .. 4712539 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG

mRNA sequence

ATGCAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG

Coding sequence (CDS)

ATGCAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG

Protein sequence

MQNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT

Homology

[Close]

BLAST of CsGy1G007350 vs. NCBI nr
Match: KGN64205.1 (hypothetical protein Csa_1G043080 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 4.1e-69
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 2   QNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKST 61
           QNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKST
Sbjct: 98  QNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKST 157

Query: 62  IQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLC 121
           IQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLC
Sbjct: 158 IQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLC 217

Query: 122 RYQLPT 128
           RYQLPT
Sbjct: 218 RYQLPT 223

[Close]

BLAST of CsGy1G007350 vs. NCBI nr
Match: XP_008446033.1 (PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 4.0e-48
Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 2   QNAYLESDILETREGVVDVTDSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASK 61
           Q+A  ESDILETRE +VD+TDSN  DLLD DD ++WM HVRQLSL+DL  H  FPF ASK
Sbjct: 93  QDANFESDILETRESIVDLTDSNVTDLLDDDDVDIWM-HVRQLSLDDLIRHASFPFGASK 152

Query: 62  STIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCP 121
           S IQALPDVF   DFSSSW C VC++DEI+A DGAKQLPC+HIFHTHCIISWLEL NSCP
Sbjct: 153 SAIQALPDVFPTDDFSSSWACAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCP 212

Query: 122 LCRYQLPT 128
           LCRY+LPT
Sbjct: 213 LCRYKLPT 219

[Close]

BLAST of CsGy1G007350 vs. NCBI nr
Match: XP_018849298.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Juglans regia])

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 98
           ++QL+ ND + +   P  ASKS +Q LP++  ++D   S SW C VC  D  E  + AKQ
Sbjct: 174 IQQLAENDPNRYGTPP--ASKSAVQELPNITISEDLLASDSWQCAVC-KDTFELGEEAKQ 233

Query: 99  LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           +PCKHI+H+ CI+ WLEL NSCP+CR++LPT
Sbjct: 234 MPCKHIYHSDCILPWLELHNSCPVCRHELPT 261

[Close]

BLAST of CsGy1G007350 vs. NCBI nr
Match: XP_010508254.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 98
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E   G KQ
Sbjct: 178 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSGVKQ 237

Query: 99  LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           +PCKH+FH  C++ WLEL NSCP+CRY+LPT
Sbjct: 238 MPCKHVFHQDCLLPWLELHNSCPVCRYELPT 265

[Close]

BLAST of CsGy1G007350 vs. NCBI nr
Match: XP_010466163.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 98
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E   G KQ
Sbjct: 178 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSGVKQ 237

Query: 99  LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           +PCKH+FH  C++ WLEL NSCP+CRY+LPT
Sbjct: 238 MPCKHVFHQDCLLPWLELHNSCPVCRYELPT 265

[Close]

BLAST of CsGy1G007350 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 6.1e-19
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 98
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E     KQ
Sbjct: 175 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSDVKQ 234

Query: 99  LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           +PCKH+FH  C++ WLEL NSCP+CR++LPT
Sbjct: 235 MPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]

BLAST of CsGy1G007350 vs. TAIR10
Match: AT5G15820.1 (RING/U-box superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 57  ASKSTIQALPDV-FTAKDFSS-SWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLEL 116
           ASKS +  LPDV  T ++ SS S VC +C  DE+   +  K+LPCKH +H  CII WL +
Sbjct: 266 ASKSVVDGLPDVELTIEELSSVSIVCAIC-KDEVVFKEKVKRLPCKHYYHGECIIPWLGI 325

Query: 117 CNSCPLCRYQLPT 128
            N+CP+CR++LPT
Sbjct: 326 RNTCPVCRHELPT 337

[Close]

BLAST of CsGy1G007350 vs. TAIR10
Match: AT3G13430.1 (RING/U-box superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-15
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 98
           +++L+ NDL+   G P  A+K  ++AL  V   K   S   C VCL D+ E    AK++P
Sbjct: 188 LQRLAENDLNNRYGTP-PATKEAVEALAMV---KIEDSLLQCSVCL-DDFEIGMEAKEMP 247

Query: 99  CKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           CKH FH+ C++ WLEL +SCP+CRY LPT
Sbjct: 248 CKHKFHSDCLLPWLELHSSCPVCRYLLPT 271

[Close]

BLAST of CsGy1G007350 vs. TAIR10
Match: AT4G26400.2 (RING/U-box superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 7.0e-15
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 98
           +  L+ ND   H   P  A K  +  LP V      S S  C +CL D+ +    AK++P
Sbjct: 206 LEHLADNDSIRHGSLP--ARKEVVDNLPTV----KISESLQCSICL-DDFDKGSEAKEMP 265

Query: 99  CKHIFHTHCIISWLELCNSCPLCRYQLP 127
           CKH FH  CI+ WLEL +SCP+CRY+LP
Sbjct: 266 CKHKFHIRCIVPWLELHSSCPVCRYELP 286

[Close]

BLAST of CsGy1G007350 vs. TAIR10
Match: AT5G56340.1 (RING/U-box superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-14
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 98
           ++ L+ ND +  +G P  A K  ++ALP V   +       C VCL D+ E    AK++P
Sbjct: 224 LQHLAENDPN-RQGTP-PARKEAVEALPTVKIMEPLQ----CSVCL-DDFEKGTEAKEMP 283

Query: 99  CKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           CKH FH  CI+ WLEL +SCP+CR++LP+
Sbjct: 284 CKHKFHVRCIVPWLELHSSCPVCRFELPS 305

[Close]

BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 98
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E     KQ
Sbjct: 175 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSDVKQ 234

Query: 99  LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           +PCKH+FH  C++ WLEL NSCP+CR++LPT
Sbjct: 235 MPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]

BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.9e-16
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDV-FTAKDFSSSW-VCGVCLNDEIEANDGAKQ 98
           ++QL+ ND + +   P  ASKS I+ALP V  T  + +S +  C VC+ D+ E    AKQ
Sbjct: 183 IQQLAENDPNRYGTPP--ASKSAIEALPLVNITKSNLNSEFNQCAVCM-DDFEEGTEAKQ 242

Query: 99  LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           +PCKH++H  C++ WLEL NSCP+CR++LPT
Sbjct: 243 MPCKHLYHKDCLLPWLELHNSCPVCRHELPT 270

[Close]

BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|Q7ZW78|RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-13
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 54  PFRASKSTIQALPDVFTAKDFSSSWV-CGVCLNDEIEANDGAKQLPCKHIFHTHCIISWL 113
           P  A+K+ +Q+LP V  + + +   V C VCL  E E  +  +++PCKH+FHT CI+ WL
Sbjct: 52  PPPAAKAVVQSLPVVIISPEQADKGVKCPVCLL-EFEEQESVREMPCKHLFHTGCILPWL 111

Query: 114 ELCNSCPLCRYQLPT 128
              NSCPLCR +LPT
Sbjct: 112 NKTNSCPLCRLELPT 125

[Close]

BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-13
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 0


Query: 6   LESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLH--EGFPFR-----AS 65
           L+  +L+  EG  D   S      +D+ +   +V    L+ L  H  E  P R     A 
Sbjct: 127 LQGSVLDPDEGQGDQGGS-----TNDDGLLEEYVLGAGLSLLLQHLAESDPSRNGTPPAK 186

Query: 66  KSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSC 125
           K  ++ALP V   +  S    C VCL D++E    AKQ+PC+H FH+ CI+ WLEL +SC
Sbjct: 187 KEAVEALPTVKIEEVVS----CSVCL-DDLEVGSQAKQMPCEHKFHSSCILPWLELHSSC 245

Query: 126 PLCRYQLPT 128
           P+CR++LP+
Sbjct: 247 PVCRFELPS 245

[Close]

BLAST of CsGy1G007350 vs. Swiss-Prot
Match: sp|Q6GPV5|RN181_XENLA (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-13
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 54  PFRASKSTIQALPDV-FTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWL 113
           P  ASK  +++LP V  T +   ++  C VCL  E E  +  +QLPC+H+FH+ CI+ WL
Sbjct: 52  PPPASKKVVESLPKVTVTPEQADAALKCPVCLL-EFEEGETVRQLPCEHLFHSACILPWL 111

Query: 114 ELCNSCPLCRYQLPT 128
              NSCPLCR++LPT
Sbjct: 112 GKTNSCPLCRHELPT 125

[Close]

BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A0A0LQL0|A0A0A0LQL0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043080 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.7e-69
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 2   QNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKST 61
           QNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKST
Sbjct: 98  QNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKST 157

Query: 62  IQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLC 121
           IQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLC
Sbjct: 158 IQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLC 217

Query: 122 RYQLPT 128
           RYQLPT
Sbjct: 218 RYQLPT 223

[Close]

BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A1S3BES6|A0A1S3BES6_CUCME (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucumis melo OX=3656 GN=LOC103488881 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.6e-48
Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 2   QNAYLESDILETREGVVDVTDSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASK 61
           Q+A  ESDILETRE +VD+TDSN  DLLD DD ++WM HVRQLSL+DL  H  FPF ASK
Sbjct: 93  QDANFESDILETRESIVDLTDSNVTDLLDDDDVDIWM-HVRQLSLDDLIRHASFPFGASK 152

Query: 62  STIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCP 121
           S IQALPDVF   DFSSSW C VC++DEI+A DGAKQLPC+HIFHTHCIISWLEL NSCP
Sbjct: 153 SAIQALPDVFPTDDFSSSWACAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCP 212

Query: 122 LCRYQLPT 128
           LCRY+LPT
Sbjct: 213 LCRYKLPT 219

[Close]

BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A2I4GZI1|A0A2I4GZI1_9ROSI (E3 ubiquitin-protein ligase RING1-like OS=Juglans regia OX=51240 GN=LOC109012220 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.0e-17
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 98
           ++QL+ ND + +   P  ASKS +Q LP++  ++D   S SW C VC  D  E  + AKQ
Sbjct: 174 IQQLAENDPNRYGTPP--ASKSAVQELPNITISEDLLASDSWQCAVC-KDTFELGEEAKQ 233

Query: 99  LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           +PCKHI+H+ CI+ WLEL NSCP+CR++LPT
Sbjct: 234 MPCKHIYHSDCILPWLELHNSCPVCRHELPT 261

[Close]

BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A022PND4|A0A022PND4_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a008418mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 98
           ++QL+ ND + +   P  ASKS ++ LPD+   ++   S S  C VC  D  E N+ AKQ
Sbjct: 187 IQQLAENDPNRYGTPP--ASKSVVEGLPDITITQEMLTSDSSQCAVC-KDSFELNEAAKQ 246

Query: 99  LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           +PCKH++H  CI+ WLEL NSCP+CRY+LPT
Sbjct: 247 IPCKHLYHKDCIVPWLELHNSCPVCRYELPT 274

[Close]

BLAST of CsGy1G007350 vs. TrEMBL
Match: tr|A0A2N9GU74|A0A2N9GU74_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30945 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 39  VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 98
           ++QL+ ND + +   P  ASKS +Q LPD+  ++D   S S  C VC  D  E ++ AKQ
Sbjct: 195 IQQLAENDPNRYGTPP--ASKSAVQGLPDIKISQDLLASDSSQCAVC-KDSFELDEVAKQ 254

Query: 99  LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 128
           +PCKHI+H+ CI+ WL+L NSCP+CRY+LPT
Sbjct: 255 MPCKHIYHSDCILPWLDLHNSCPVCRYELPT 282

The following BLAST results are available for this feature:

BLAST of CsGy1G007350 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64205.1	4.1e-69	100.00	hypothetical protein Csa_1G043080 [Cucumis sativus]	[more]
XP_008446033.1	4.0e-48	75.00	PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo]	[more]
XP_018849298.1	1.1e-16	49.45	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Juglans regia]	[more]
XP_010508254.1	1.8e-16	51.65	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]	[more]
XP_010466163.1	1.8e-16	51.65	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]	[more]

BLAST of CsGy1G007350 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19950.1	6.1e-19	49.45	RING/U-box superfamily protein	[more]
AT5G15820.1	1.8e-15	50.68	RING/U-box superfamily protein	[more]
AT3G13430.1	4.1e-15	46.07	RING/U-box superfamily protein	[more]
AT4G26400.2	7.0e-15	43.18	RING/U-box superfamily protein	[more]
AT5G56340.1	2.7e-14	42.70	RING/U-box superfamily protein	[more]

BLAST of CsGy1G007350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LPN7\|RNG1L_ARATH	1.1e-17	49.45	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|P0CH30\|RING1_GOSHI	7.9e-16	47.25	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q7ZW78\|RN181_DANRE	1.3e-13	46.67	E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2	[more]
sp\|Q6AVN2\|SIRP1_ORYSJ	1.7e-13	37.21	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
sp\|Q6GPV5\|RN181_XENLA	3.7e-13	46.67	E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1	[more]

BLAST of CsGy1G007350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQL0\|A0A0A0LQL0_CUCSA	2.7e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043080 PE=4 SV=1	[more]
tr\|A0A1S3BES6\|A0A1S3BES6_CUCME	2.6e-48	75.00	ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A2I4GZI1\|A0A2I4GZI1_9ROSI	7.0e-17	49.45	E3 ubiquitin-protein ligase RING1-like OS=Juglans regia OX=51240 GN=LOC109012220...	[more]
tr\|A0A022PND4\|A0A022PND4_ERYGU	2.6e-16	48.35	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a008418mg PE...	[more]
tr\|A0A2N9GU74\|A0A2N9GU74_FAGSY	3.5e-16	49.45	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30945 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G007350.1	CsGy1G007350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 80..121 e-value: 4.3E-6 score: 36.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 80..122 e-value: 2.1E-11 score: 43.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 80..122 score: 11.988
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 50..127 e-value: 9.1E-17 score: 62.5
None	No IPR available	PANTHER	PTHR44679	FAMILY NOT NAMED	coord: 39..127
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 79..125

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G007350	Csa1G043080	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G007350	MELO3C002162	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G007350	CSPI01G07480	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G007350	CsaV3_1G007450	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G007350	Cucurbita maxima (Rimu)	cgybcmaB073
CsGy1G007350	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G007350	Cucurbita moschata (Rifu)	cgybcmoB067
CsGy1G007350	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G007350	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G007350	Cucurbita pepo (Zucchini)	cgybcpeB069
CsGy1G007350	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G007350	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G007350	Watermelon (Charleston Gray)	cgybwcgB020
CsGy1G007350	Watermelon (97103) v1	cgybwmB042
CsGy1G007350	Silver-seed gourd	carcgybB0393
CsGy1G007350	Silver-seed gourd	carcgybB0500
CsGy1G007350	Watermelon (97103) v2	cgybwmbB010
CsGy1G007350	Wax gourd	cgybwgoB025