MELO3C002162 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002162
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RING finger protein 126
Location	chr12 : 24731677 .. 24732392 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTAATTATTTCTCAAATCTTTTAAATTTTAGTTTTTAAAATTACACTAAAAATTCATAAAATTTCAAAATTTTGTCTTTTATATAGTAATTTTATAAAATTAAAATTAAAAAGATCATATACTAAAATTTTAATTTTTAAAAAAAGAAAGAAACTTGTAATGTTAAATTTCTAATTAGCCTTATTTTCCTCTATGAACTAATATGCAGGACGCCAATTTCGAAAGCGATATTCTTGAAACGAGGGAAAGTATAGTAGACCTTACCGATTCTAATGTTACGGACTTATTGGATGATGACGATGTGGATATTTGGATGCACGTGAGACAACTTTCTCTAGACGATCTGATCCGTCACGCAAGCTTCCCGTTCGGAGCTTCAAAATCGGCGATTCAGGCACTACCAGATGTTTTTCCTACGGATGACTTTTCTTCTTCTTGGGCGTGTGCTGTGTGTATGGATGACGAGATTGATGCAAAGGATGGGGCGAAACAGCTACCCTGTGAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGCACAATTCTTGCCCACTTTGTCGATACAAATTGCCCACATAGATAGTGATTTTTTATTTATTTATATTTTTAATATTCATTTTTTTAATTCTCTATACAAAATTTTTATATTTTAAATTCAATTTTTTTTAAAGAAAAATAACAAATCTTATGTTATATAGAAATC

mRNA sequence

TTTGTAATTATTTCTCAAATCTTTTAAATTTTAGTTTTTAAAATTACACTAAAAATTCATAAAATTTCAAAATTTTGTCTTTTATATAGTAATTTTATAAAATTAAAATTAAAAAGATCATATACTAAAATTTTAATTTTTAAAAAAAGAAAGAAACTTGTAATGTTAAATTTCTAATTAGCCTTATTTTCCTCTATGAACTAATATGCAGGACGCCAATTTCGAAAGCGATATTCTTGAAACGAGGGAAAGTATAGTAGACCTTACCGATTCTAATGTTACGGACTTATTGGATGATGACGATGTGGATATTTGGATGCACGTGAGACAACTTTCTCTAGACGATCTGATCCGTCACGCAAGCTTCCCGTTCGGAGCTTCAAAATCGGCGATTCAGGCACTACCAGATGTTTTTCCTACGGATGACTTTTCTTCTTCTTGGGCGTGTGCTGTGTGTATGGATGACGAGATTGATGCAAAGGATGGGGCGAAACAGCTACCCTGTGAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGCACAATTCTTGCCCACTTTGTCGATACAAATTGCCCACATAGATAGTGATTTTTTATTTATTTATATTTTTAATATTCATTTTTTTAATTCTCTATACAAAATTTTTATATTTTAAATTCAATTTTTTTTAAAGAAAAATAACAAATCTTATGTTATATAGAAATC

Coding sequence (CDS)

ATGCAGGACGCCAATTTCGAAAGCGATATTCTTGAAACGAGGGAAAGTATAGTAGACCTTACCGATTCTAATGTTACGGACTTATTGGATGATGACGATGTGGATATTTGGATGCACGTGAGACAACTTTCTCTAGACGATCTGATCCGTCACGCAAGCTTCCCGTTCGGAGCTTCAAAATCGGCGATTCAGGCACTACCAGATGTTTTTCCTACGGATGACTTTTCTTCTTCTTGGGCGTGTGCTGTGTGTATGGATGACGAGATTGATGCAAAGGATGGGGCGAAACAGCTACCCTGTGAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGCACAATTCTTGCCCACTTTGTCGATACAAATTGCCCACATAG

Protein sequence

MQDANFESDILETRESIVDLTDSNVTDLLDDDDVDIWMHVRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWACAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCPLCRYKLPT*

Homology

[Close]

BLAST of MELO3C002162 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-18
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWA--CAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  R+ + P  ASKSAI ALP V  T D   S    CAVCMD+  D  D  KQ
Sbjct: 175 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSD-VKQ 234

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+H+FH  C++ WLELHNSCP+CR++LPT
Sbjct: 235 MPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]

BLAST of MELO3C002162 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.2e-17
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSW--ACAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  R+ + P  ASKSAI+ALP V  T    +S    CAVCMDD  +  + AKQ
Sbjct: 183 IQQLAENDPNRYGTPP--ASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTE-AKQ 242

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+H++H  C++ WLELHNSCP+CR++LPT
Sbjct: 243 MPCKHLYHKDCLLPWLELHNSCPVCRHELPT 270

[Close]

BLAST of MELO3C002162 vs. Swiss-Prot
Match: RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-13
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 58  ASKSAIQALP--DVFPTDDFSSSWA-CAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLE 117
           ASKSAI+ALP  ++ PT   S S + CAVC ++ +  K  A+++PC HI+H  CI+ WL 
Sbjct: 175 ASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFV-LKSSAREMPCNHIYHPDCILPWLA 234

Query: 118 LHNSCPLCRYKLP 128
           + NSCP+CR++LP
Sbjct: 235 IRNSCPVCRHELP 246

[Close]

BLAST of MELO3C002162 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-12
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 58  ASKSAIQALPDVFPTDDFSSSWA-CAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELH 117
           ASKSAI++LP V  +D    S A CAVC  +  + +  A+++PC+H+FH  CI+ WL + 
Sbjct: 175 ASKSAIESLPRVEISDCHIGSEANCAVC-TEIFETETEAREMPCKHLFHDDCIVPWLSIR 234

Query: 118 NSCPLCRYKLPT 129
           NSCP+CR++LP+
Sbjct: 235 NSCPVCRFELPS 245

[Close]

BLAST of MELO3C002162 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.1e-12
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 58  ASKSAIQALPDVFPTDDFSSSWA-CAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELH 117
           ASKSAI++LP V  +D  + + A CAVC  +  +A    +++PC+HIFH  CI+ WL + 
Sbjct: 191 ASKSAIESLPRVEISDCHTKAEANCAVC-TEVFEAGIEGREMPCKHIFHGDCIVPWLSIR 250

Query: 118 NSCPLCRYKLPT 129
           NSCP+CR++LP+
Sbjct: 251 NSCPVCRFELPS 261

[Close]

BLAST of MELO3C002162 vs. TrEMBL
Match: A0A0A0LQL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043080 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-48
Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 1


Query: 2   QDANFESDILETRESIVDLTDSNVTDLLDDDDVDIWM-HVRQLSLDDLIRHASFPFGASK 61
           Q+A  ESDILETRE +VD+TDSN  DLLD DD ++WM HVRQLSL+DL  H  FPF ASK
Sbjct: 98  QNAYLESDILETREGVVDVTDSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASK 157

Query: 62  SAIQALPDVFPTDDFSSSWACAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCP 121
           S IQALPDVF   DFSSSW C VC++DEI+A DGAKQLPC+HIFHTHCIISWLEL NSCP
Sbjct: 158 STIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCP 217

Query: 122 LCRYKLPT 129
           LCRY+LPT
Sbjct: 218 LCRYQLPT 223

[Close]

BLAST of MELO3C002162 vs. TrEMBL
Match: A0A0D3AC63_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWA--CAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  RH + P  ASKSAI ALP V  T D  +S    CAVCMD+  D +D  KQ
Sbjct: 165 IQQLAENDPNRHGTPP--ASKSAIDALPTVKVTLDMLNSEMNQCAVCMDEFEDGRD-VKQ 224

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+H+FH  C++ WLELHNSCP+CRY+LPT
Sbjct: 225 MPCKHVFHQDCLMPWLELHNSCPVCRYELPT 252

[Close]

BLAST of MELO3C002162 vs. TrEMBL
Match: A0A0K9QXJ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135340 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-17
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDF--SSSWACAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  RH + P  ASK AI  LP+V  T D   S S +CAVCM+ E +     KQ
Sbjct: 173 IQQLAENDPNRHGTPP--ASKEAIDDLPNVVITADVVNSDSNSCAVCMN-EFEVDSSVKQ 232

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+H+FH+ C+I WL+LHNSCP+CRY+LPT
Sbjct: 233 MPCKHLFHSECLIPWLQLHNSCPVCRYELPT 260

[Close]

BLAST of MELO3C002162 vs. TrEMBL
Match: V4LVM7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021059mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.5e-17
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWA--CAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  R+ + P  ASKSAI ALP V  T D   S    CAVCMD+  D  D  KQ
Sbjct: 180 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSD-VKQ 239

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+H+FH  C++ WL+LHNSCP+CRY+LPT
Sbjct: 240 MPCKHVFHQDCLLPWLQLHNSCPVCRYELPT 267

[Close]

BLAST of MELO3C002162 vs. TrEMBL
Match: C7DUY8_CARPA (Zinc finger protein OS=Carica papaya PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.5e-17
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDV--FPTDDFSSSWACAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  RH + P  ASKSAI+ALP +  F     S S  CAVC D    A++ AKQ
Sbjct: 158 IQQLAENDPNRHGTPP--ASKSAIEALPTIKIFQEMPDSDSSQCAVCKDSFALAEE-AKQ 217

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+HI+H+ CI+ WLELHNSCP+CRY+LPT
Sbjct: 218 MPCKHIYHSQCILPWLELHNSCPVCRYELPT 245

[Close]

BLAST of MELO3C002162 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-20
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWA--CAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  R+ + P  ASKSAI ALP V  T D   S    CAVCMD+  D  D  KQ
Sbjct: 175 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSD-VKQ 234

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+H+FH  C++ WLELHNSCP+CR++LPT
Sbjct: 235 MPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]

BLAST of MELO3C002162 vs. TAIR10
Match: AT4G26400.2 (AT4G26400.2 RING/U-box superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-17
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWACAVCMDDEIDAKDGAKQLP 99
           +  L+ +D IRH S P  A K  +  LP V      S S  C++C+DD  D    AK++P
Sbjct: 206 LEHLADNDSIRHGSLP--ARKEVVDNLPTV----KISESLQCSICLDD-FDKGSEAKEMP 265

Query: 100 CEHIFHTHCIISWLELHNSCPLCRYKLP 128
           C+H FH  CI+ WLELH+SCP+CRY+LP
Sbjct: 266 CKHKFHIRCIVPWLELHSSCPVCRYELP 286

[Close]

BLAST of MELO3C002162 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 77.0 bits (188), Expect = 9.3e-15
Identity = 39/80 (48.75%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 51  HASFPFGASKSAIQALPDVFPTDDF--SSSWACAVCMDDEIDAKDGAKQLPCEHIFHTHC 110
           H   P  A KS+I ALP +  T     SS   C VC D E + K  AKQ+PC HI+H+ C
Sbjct: 154 HHRGPPPAPKSSIDALPTIKITQKHLKSSDSHCPVCKD-EFELKSEAKQMPCHHIYHSDC 213

Query: 111 IISWLELHNSCPLCRYKLPT 129
           I+ WL  HNSCP+CR +LP+
Sbjct: 214 IVPWLVQHNSCPVCRKELPS 232

[Close]

BLAST of MELO3C002162 vs. TAIR10
Match: AT5G15820.1 (AT5G15820.1 RING/U-box superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 58  ASKSAIQALPDVFPT-DDFSS-SWACAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLEL 117
           ASKS +  LPDV  T ++ SS S  CA+C D E+  K+  K+LPC+H +H  CII WL +
Sbjct: 266 ASKSVVDGLPDVELTIEELSSVSIVCAICKD-EVVFKEKVKRLPCKHYYHGECIIPWLGI 325

Query: 118 HNSCPLCRYKLPT 129
            N+CP+CR++LPT
Sbjct: 326 RNTCPVCRHELPT 337

[Close]

BLAST of MELO3C002162 vs. TAIR10
Match: AT2G39720.1 (AT2G39720.1 RING-H2 finger C2A)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-14
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 58  ASKSAIQALP--DVFPTDDFSSSWA-CAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLE 117
           ASKSAI+ALP  ++ PT   S S + CAVC ++ +  K  A+++PC HI+H  CI+ WL 
Sbjct: 175 ASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFV-LKSSAREMPCNHIYHPDCILPWLA 234

Query: 118 LHNSCPLCRYKLP 128
           + NSCP+CR++LP
Sbjct: 235 IRNSCPVCRHELP 246

[Close]

BLAST of MELO3C002162 vs. NCBI nr
Match: gi|659068755|ref|XP_008446033.1| (PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo])

HSP 1 Score: 270.4 bits (690), Expect = 1.6e-69
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 2   QDANFESDILETRESIVDLTDSNVTDLLDDDDVDIWMHVRQLSLDDLIRHASFPFGASKS 61
           QDANFESDILETRESIVDLTDSNVTDLLDDDDVDIWMHVRQLSLDDLIRHASFPFGASKS
Sbjct: 93  QDANFESDILETRESIVDLTDSNVTDLLDDDDVDIWMHVRQLSLDDLIRHASFPFGASKS 152

Query: 62  AIQALPDVFPTDDFSSSWACAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCPL 121
           AIQALPDVFPTDDFSSSWACAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCPL
Sbjct: 153 AIQALPDVFPTDDFSSSWACAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCPL 212

Query: 122 CRYKLPT 129
           CRYKLPT
Sbjct: 213 CRYKLPT 219

[Close]

BLAST of MELO3C002162 vs. NCBI nr
Match: gi|700209109|gb|KGN64205.1| (hypothetical protein Csa_1G043080 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 4.6e-48
Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 1


Query: 2   QDANFESDILETRESIVDLTDSNVTDLLDDDDVDIWM-HVRQLSLDDLIRHASFPFGASK 61
           Q+A  ESDILETRE +VD+TDSN  DLLD DD ++WM HVRQLSL+DL  H  FPF ASK
Sbjct: 98  QNAYLESDILETREGVVDVTDSN--DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASK 157

Query: 62  SAIQALPDVFPTDDFSSSWACAVCMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCP 121
           S IQALPDVF   DFSSSW C VC++DEI+A DGAKQLPC+HIFHTHCIISWLEL NSCP
Sbjct: 158 STIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCP 217

Query: 122 LCRYKLPT 129
           LCRY+LPT
Sbjct: 218 LCRYQLPT 223

[Close]

BLAST of MELO3C002162 vs. NCBI nr
Match: gi|729346272|ref|XP_010541863.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWA--CAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  R+ + P  ASKSAI ALP V  T+D  +S    CAVCMD E +    AKQ
Sbjct: 167 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTEDLLNSEMNQCAVCMD-EFEKGSDAKQ 226

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+H++H HC++ WL+LHNSCP+CRY+LPT
Sbjct: 227 MPCKHVYHQHCLLPWLQLHNSCPVCRYELPT 254

[Close]

BLAST of MELO3C002162 vs. NCBI nr
Match: gi|922405846|ref|XP_013589457.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Brassica oleracea var. oleracea])

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWA--CAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  RH + P  ASKSAI ALP V  T D  +S    CAVCMD+  D +D  KQ
Sbjct: 165 IQQLAENDPNRHGTPP--ASKSAIDALPTVKVTLDMLNSEMNQCAVCMDEFEDGRD-VKQ 224

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+H+FH  C++ WLELHNSCP+CRY+LPT
Sbjct: 225 MPCKHVFHQDCLMPWLELHNSCPVCRYELPT 252

[Close]

BLAST of MELO3C002162 vs. NCBI nr
Match: gi|727586242|ref|XP_010466163.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-17
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1


Query: 40  VRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWA--CAVCMDDEIDAKDGAKQ 99
           ++QL+ +D  R+ + P  ASKSAI ALP V  T D   S    CAVCMD E +   G KQ
Sbjct: 178 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCMD-EFEDGSGVKQ 237

Query: 100 LPCEHIFHTHCIISWLELHNSCPLCRYKLPT 129
           +PC+H+FH  C++ WLELHNSCP+CRY+LPT
Sbjct: 238 MPCKHVFHQDCLLPWLELHNSCPVCRYELPT 265

The following BLAST results are available for this feature:

BLAST of MELO3C002162 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNG1L_ARATH	1.0e-18	52.75	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]
RING1_GOSHI	7.2e-17	50.55	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]
RHC2A_ARATH	3.7e-13	49.32	Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana GN=RHC2A PE=2...	[more]
RDUF2_ARATH	1.8e-12	47.22	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1	[more]
RDUF1_ARATH	4.1e-12	47.22	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1	[more]

BLAST of MELO3C002162 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQL0_CUCSA	3.2e-48	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043080 PE=4 SV=1	[more]
A0A0D3AC63_BRAOL	1.0e-17	54.95	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0K9QXJ9_SPIOL	6.5e-17	51.65	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135340 PE=4 SV=1	[more]
V4LVM7_EUTSA	8.5e-17	52.75	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021059mg PE=4 SV=1	[more]
C7DUY8_CARPA	8.5e-17	53.85	Zinc finger protein OS=Carica papaya PE=2 SV=1	[more]

BLAST of MELO3C002162 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19950.1	5.6e-20	52.75	RING/U-box superfamily protein	[more]
AT4G26400.2	3.4e-17	46.59	RING/U-box superfamily protein	[more]
AT3G56580.2	9.3e-15	48.75	RING/U-box superfamily protein	[more]
AT5G15820.1	1.6e-14	50.68	RING/U-box superfamily protein	[more]
AT2G39720.1	2.1e-14	49.32	RING-H2 finger C2A	[more]

BLAST of MELO3C002162 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068755\|ref\|XP_008446033.1\|	1.6e-69	100.00	PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo]	[more]
gi\|700209109\|gb\|KGN64205.1\|	4.6e-48	75.00	hypothetical protein Csa_1G043080 [Cucumis sativus]	[more]
gi\|729346272\|ref\|XP_010541863.1\|	1.1e-17	52.75	PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform X2 [Tarenaya hassleria...	[more]
gi\|922405846\|ref\|XP_013589457.1\|	1.4e-17	54.95	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Brassica oleracea var. olerac...	[more]
gi\|727586242\|ref\|XP_010466163.1\|	4.2e-17	53.85	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002162T1	MELO3C002162T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 81..123 score: 2.3
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 81..122 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 81..123 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 80..124 score: 1.8
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 1..128 score: 1.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 80..126 score: 4.78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002162	CSPI01G07480	Wild cucumber (PI 183967)	cpimeB024
MELO3C002162	CsGy1G007350	Cucumber (Gy14) v2	cgybmeB022
MELO3C002162	CsaV3_1G007450	Cucumber (Chinese Long) v3	cucmeB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002162	Silver-seed gourd	carmeB0393
MELO3C002162	Silver-seed gourd	carmeB0499
MELO3C002162	Watermelon (97103) v2	mewmbB133
MELO3C002162	Wax gourd	mewgoB173
MELO3C002162	Cucumber (Gy14) v1	cgymeB185
MELO3C002162	Cucurbita maxima (Rimu)	cmameB193
MELO3C002162	Cucurbita maxima (Rimu)	cmameB365
MELO3C002162	Cucurbita moschata (Rifu)	cmomeB180
MELO3C002162	Cucurbita moschata (Rifu)	cmomeB356
MELO3C002162	Cucumber (Chinese Long) v2	cumeB027
MELO3C002162	Watermelon (Charleston Gray)	mewcgB130
MELO3C002162	Watermelon (97103) v1	mewmB166
MELO3C002162	Cucurbita pepo (Zucchini)	cpemeB026
MELO3C002162	Cucurbita pepo (Zucchini)	cpemeB478
MELO3C002162	Bottle gourd (USVL1VR-Ls)	lsimeB179