CsaV3_1G007450 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G007450
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionE3 ubiquitin-protein ligase RING1-like
Locationchr1 : 4739011 .. 4740582 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACACAGCAAAGAACAACGTTGAAAAACAACACAGAGAGGAAAATAGAGAGGAGAGGAATGAACAGACTATTGGAAGAAGAAGCAGTTGATGAGATTATTTCATTTGCCTCCGACTTCCCTTCCCATGAGGATGATGCCGTAGATCTTCTCCTGGATTTCATCACAAACGAGCATACATCAAGTACTTACATTTTTCTTTTAAAATGTTAATCCATGCTACATAGTTAAATTTATCTTGCTTTTTAGTTATTGGATCGGATGATTTAAAATAATATTAGAGCATGTTGGTTTAAGAGATCGTGCGCTCAAACCCAATCTTATTTTTTTCGACTTTTAGATGAATAGATGATTTAAGGCGGATTGTCCAAAATTGAGATGGCTAGAAATTTTGGTGAATAATATATGTTTTGACAAATATTCTTATAATTGAAGAGAAACAAATTAGTTTGTGCATTTGTATTATCAAATATTTTTCAATTCTTTGTTGATTGGGTGATTTTTCTTTTTCTTCTTTTTTTTGCTAGATGGAGCTCTAGCAATAGATATGAATTTAGTTCATTGGGCAATTAACCATTTACGTGCTGCCGATGCTGTCGTCGATGTTACCAATAGTGTCAGTTCAACACAACAGGTGATTTTCATTGATTTTTTTGGAACGATGGAATGGTTTAAGTCCAAACTTAATAATCAACAAGATATAAAATAGATTTTCTGACAACTCACAAATAAATAGCTGAGTTCCGACTTTCGTTTTCTAAAAGTGAGAGATTGTTTGGTTCACCAAATGAAGTTAATAAATCTAAGTTAATCTATCCCATTTAATTAGTTTGTCAAATTGTAATATGGAATTTCTAATAAAGGTGAGTTTCAATAGTGTTTAATATTAAAATTGAATTGTTTACCCAAACTCAATAATTGAGCCAAACAACTCTATACAACCATAGTAATTATAATTGATAACGGTTTTAAAAATAATAATTAAGATTTTTTTTCAATCCATAATAATTTTTATGATATTATTAAAGTATATTTAACATTTAAAAGATTTACAAACATTGCGCATTTAAGTTTTTAAAATTACACTAAGAATTCATAAAATTTCAAATTTTATAGTAATTTTAAAAAAATTAAAAAATGATATACTAAATTTTCTAATTACCTCTATTTTTCTCGGAAACTAATATGCAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG

mRNA sequence

ATGGAAACACAGCAAAGAACAACGTTGAAAAACAACACAGAGAGGAAAATAGAGAGGAGAGGAATGAACAGACTATTGGAAGAAGAAGCAGTTGATGAGATTATTTCATTTGCCTCCGACTTCCCTTCCCATGAGGATGATGCCGTAGATCTTCTCCTGGATTTCATCACAAACGAGCATACATCAAATGGAGCTCTAGCAATAGATATGAATTTAGTTCATTGGGCAATTAACCATTTACGTGCTGCCGATGCTGTCGTCGATGTTACCAATAGTGTCAGTTCAACACAACAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG

Coding sequence (CDS)

ATGGAAACACAGCAAAGAACAACGTTGAAAAACAACACAGAGAGGAAAATAGAGAGGAGAGGAATGAACAGACTATTGGAAGAAGAAGCAGTTGATGAGATTATTTCATTTGCCTCCGACTTCCCTTCCCATGAGGATGATGCCGTAGATCTTCTCCTGGATTTCATCACAAACGAGCATACATCAAATGGAGCTCTAGCAATAGATATGAATTTAGTTCATTGGGCAATTAACCATTTACGTGCTGCCGATGCTGTCGTCGATGTTACCAATAGTGTCAGTTCAACACAACAGAACGCCTATTTGGAAAGCGATATTCTTGAAACGAGGGAAGGTGTAGTAGACGTTACTGATTCTAATGACTTATTGGATGCTGACGATGAAGAGATGTGGATGGCGCACGTGAGACAACTTTCTCTAAACGATCTGAGCCTTCATGAAGGCTTTCCATTCCGGGCTTCAAAATCGACGATTCAGGCACTACCAGATGTTTTTACTGCGAAGGACTTTTCTTCTTCTTGGGTGTGTGGTGTGTGTTTGAATGATGAGATTGAGGCAAACGATGGGGCGAAACAGCTGCCCTGTAAACACATATTTCATACACATTGTATTATTTCTTGGTTGGAATTGTGCAATTCTTGCCCACTTTGTCGATACCAATTGCCCACATAG

Protein sequence

METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEHTSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
Homology
[Close]
BLAST of CsaV3_1G007450 vs. NCBI nr
Match: KGN64205.1 (hypothetical protein Csa_1G043080 [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 2.3e-123
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0 

Query: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60
           METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH
Sbjct: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60

Query: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120
           TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN
Sbjct: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120

Query: 121 DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL 180
           DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL
Sbjct: 121 DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL 180

Query: 181 NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
Sbjct: 181 NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 223

[Close]
BLAST of CsaV3_1G007450 vs. NCBI nr
Match: XP_008446033.1 (PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo])

HSP 1 Score: 313.9 bits (803), Expect = 4.3e-82
Identity = 163/225 (72.44%), Postives = 181/225 (80.44%), Query Frame = 0 

Query: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60
           ME QQ  TL+ NT+RKIE RGMNRLLEEEAVDEI+SFASDFPSHED+AVDLLLD IT E 
Sbjct: 1   MEAQQIITLRTNTKRKIESRGMNRLLEEEAVDEILSFASDFPSHEDEAVDLLLDVITTEL 60

Query: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120
           TSN A  IDM+LVHWA+  LRAA+       S  ST Q+A  ESDILETRE +VD+TDSN
Sbjct: 61  TSNRARVIDMDLVHWAVTLLRAAN-----NTSADSTPQDANFESDILETRESIVDLTDSN 120

Query: 121 --DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGV 180
             DLLD DD ++WM HVRQLSL+DL  H  FPF ASKS IQALPDVF   DFSSSW C V
Sbjct: 121 VTDLLDDDDVDIWM-HVRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWACAV 180

Query: 181 CLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           C++DEI+A DGAKQLPC+HIFHTHCIISWLEL NSCPLCRY+LPT
Sbjct: 181 CMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCPLCRYKLPT 219

[Close]
BLAST of CsaV3_1G007450 vs. NCBI nr
Match: XP_018849298.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Juglans regia])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS +Q LP++  ++D   S SW C VC  D  E  + AKQ
Sbjct: 174 IQQLAENDPNRYGTPP--ASKSAVQELPNITISEDLLASDSWQCAVC-KDTFELGEEAKQ 233

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKHI+H+ CI+ WLEL NSCP+CR++LPT
Sbjct: 234 MPCKHIYHSDCILPWLELHNSCPVCRHELPT 261

[Close]
BLAST of CsaV3_1G007450 vs. NCBI nr
Match: XP_010508254.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E   G KQ
Sbjct: 178 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSGVKQ 237

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CRY+LPT
Sbjct: 238 MPCKHVFHQDCLLPWLELHNSCPVCRYELPT 265

[Close]
BLAST of CsaV3_1G007450 vs. NCBI nr
Match: XP_010466163.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E   G KQ
Sbjct: 178 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSGVKQ 237

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CRY+LPT
Sbjct: 238 MPCKHVFHQDCLLPWLELHNSCPVCRYELPT 265

[Close]
BLAST of CsaV3_1G007450 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 6.3e-19
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E     KQ
Sbjct: 175 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSDVKQ 234

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CR++LPT
Sbjct: 235 MPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]
BLAST of CsaV3_1G007450 vs. TAIR10
Match: AT3G13430.1 (RING/U-box superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-15
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 194
           +++L+ NDL+   G P  A+K  ++AL  V   K   S   C VCL D+ E    AK++P
Sbjct: 188 LQRLAENDLNNRYGTP-PATKEAVEALAMV---KIEDSLLQCSVCL-DDFEIGMEAKEMP 247

Query: 195 CKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           CKH FH+ C++ WLEL +SCP+CRY LPT
Sbjct: 248 CKHKFHSDCLLPWLELHSSCPVCRYLLPT 271

[Close]
BLAST of CsaV3_1G007450 vs. TAIR10
Match: AT5G15820.1 (RING/U-box superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-15
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 0 

Query: 86  VVDVTNSVSSTQQNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLNDLSL 145
           V++   S+ S      L  ++  +    +DV    D +D      + A + Q+  N+  +
Sbjct: 201 VMEFAASIYSDAWEILLYDNMTNSAPMDLDVEVWLDSVDGYAPMDYNAIIGQMFDNETGI 260

Query: 146 HEGFPFRASKSTIQALPDV-FTAKDFSS-SWVCGVCLNDEIEANDGAKQLPCKHIFHTHC 205
            +G P  ASKS +  LPDV  T ++ SS S VC +C  DE+   +  K+LPCKH +H  C
Sbjct: 261 -KGTP-PASKSVVDGLPDVELTIEELSSVSIVCAIC-KDEVVFKEKVKRLPCKHYYHGEC 320

Query: 206 IISWLELCNSCPLCRYQLPT 224
           II WL + N+CP+CR++LPT
Sbjct: 321 IIPWLGIRNTCPVCRHELPT 337

[Close]
BLAST of CsaV3_1G007450 vs. TAIR10
Match: AT4G26400.2 (RING/U-box superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 7.3e-15
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 194
           +  L+ ND   H   P  A K  +  LP V      S S  C +CL D+ +    AK++P
Sbjct: 206 LEHLADNDSIRHGSLP--ARKEVVDNLPTV----KISESLQCSICL-DDFDKGSEAKEMP 265

Query: 195 CKHIFHTHCIISWLELCNSCPLCRYQLP 223
           CKH FH  CI+ WLEL +SCP+CRY+LP
Sbjct: 266 CKHKFHIRCIVPWLELHSSCPVCRYELP 286

[Close]
BLAST of CsaV3_1G007450 vs. TAIR10
Match: AT5G56340.1 (RING/U-box superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 194
           ++ L+ ND +  +G P  A K  ++ALP V   +       C VCL D+ E    AK++P
Sbjct: 224 LQHLAENDPN-RQGTP-PARKEAVEALPTVKIMEPLQ----CSVCL-DDFEKGTEAKEMP 283

Query: 195 CKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           CKH FH  CI+ WLEL +SCP+CR++LP+
Sbjct: 284 CKHKFHVRCIVPWLELHSSCPVCRFELPS 305

[Close]
BLAST of CsaV3_1G007450 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWV--CGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I ALP V   KD   S +  C VC+ DE E     KQ
Sbjct: 175 IQQLAENDPNRYGTPP--ASKSAIDALPTVKVTKDMLKSEMNQCAVCM-DEFEDGSDVKQ 234

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH+FH  C++ WLEL NSCP+CR++LPT
Sbjct: 235 MPCKHVFHQDCLLPWLELHNSCPVCRFELPT 262

[Close]
BLAST of CsaV3_1G007450 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.2e-16
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDV-FTAKDFSSSW-VCGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS I+ALP V  T  + +S +  C VC+ D+ E    AKQ
Sbjct: 183 IQQLAENDPNRYGTPP--ASKSAIEALPLVNITKSNLNSEFNQCAVCM-DDFEEGTEAKQ 242

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH++H  C++ WLEL NSCP+CR++LPT
Sbjct: 243 MPCKHLYHKDCLLPWLELHNSCPVCRHELPT 270

[Close]
BLAST of CsaV3_1G007450 vs. Swiss-Prot
Match: sp|Q7ZW78|RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 150 PFRASKSTIQALPDVFTAKDFSSSWV-CGVCLNDEIEANDGAKQLPCKHIFHTHCIISWL 209
           P  A+K+ +Q+LP V  + + +   V C VCL  E E  +  +++PCKH+FHT CI+ WL
Sbjct: 52  PPPAAKAVVQSLPVVIISPEQADKGVKCPVCLL-EFEEQESVREMPCKHLFHTGCILPWL 111

Query: 210 ELCNSCPLCRYQLPT 224
              NSCPLCR +LPT
Sbjct: 112 NKTNSCPLCRLELPT 125

[Close]
BLAST of CsaV3_1G007450 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13
Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 0 

Query: 82  AADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSNDLLDADDEEMWMAHVRQLSLN 141
           A D   D +  +++  Q   L+  +L+  EG  D   S      +D+ +   +V    L+
Sbjct: 107 ADDQERDSSILINAFNQALALQGSVLDPDEGQGDQGGS-----TNDDGLLEEYVLGAGLS 166

Query: 142 DLSLH--EGFPFR-----ASKSTIQALPDVFTAKDFSSSWVCGVCLNDEIEANDGAKQLP 201
            L  H  E  P R     A K  ++ALP V   +  S    C VCL D++E    AKQ+P
Sbjct: 167 LLLQHLAESDPSRNGTPPAKKEAVEALPTVKIEEVVS----CSVCL-DDLEVGSQAKQMP 226

Query: 202 CKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           C+H FH+ CI+ WLEL +SCP+CR++LP+
Sbjct: 227 CEHKFHSSCILPWLELHSSCPVCRFELPS 245

[Close]
BLAST of CsaV3_1G007450 vs. Swiss-Prot
Match: sp|Q6GPV5|RN181_XENLA (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-13
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 150 PFRASKSTIQALPDV-FTAKDFSSSWVCGVCLNDEIEANDGAKQLPCKHIFHTHCIISWL 209
           P  ASK  +++LP V  T +   ++  C VCL  E E  +  +QLPC+H+FH+ CI+ WL
Sbjct: 52  PPPASKKVVESLPKVTVTPEQADAALKCPVCLL-EFEEGETVRQLPCEHLFHSACILPWL 111

Query: 210 ELCNSCPLCRYQLPT 224
              NSCPLCR++LPT
Sbjct: 112 GKTNSCPLCRHELPT 125

[Close]
BLAST of CsaV3_1G007450 vs. TrEMBL
Match: tr|A0A0A0LQL0|A0A0A0LQL0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043080 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.5e-123
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0 

Query: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60
           METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH
Sbjct: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60

Query: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120
           TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN
Sbjct: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120

Query: 121 DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL 180
           DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL
Sbjct: 121 DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGVCL 180

Query: 181 NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT
Sbjct: 181 NDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 223

[Close]
BLAST of CsaV3_1G007450 vs. TrEMBL
Match: tr|A0A1S3BES6|A0A1S3BES6_CUCME (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucumis melo OX=3656 GN=LOC103488881 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.9e-82
Identity = 163/225 (72.44%), Postives = 181/225 (80.44%), Query Frame = 0 

Query: 1   METQQRTTLKNNTERKIERRGMNRLLEEEAVDEIISFASDFPSHEDDAVDLLLDFITNEH 60
           ME QQ  TL+ NT+RKIE RGMNRLLEEEAVDEI+SFASDFPSHED+AVDLLLD IT E 
Sbjct: 1   MEAQQIITLRTNTKRKIESRGMNRLLEEEAVDEILSFASDFPSHEDEAVDLLLDVITTEL 60

Query: 61  TSNGALAIDMNLVHWAINHLRAADAVVDVTNSVSSTQQNAYLESDILETREGVVDVTDSN 120
           TSN A  IDM+LVHWA+  LRAA+       S  ST Q+A  ESDILETRE +VD+TDSN
Sbjct: 61  TSNRARVIDMDLVHWAVTLLRAAN-----NTSADSTPQDANFESDILETRESIVDLTDSN 120

Query: 121 --DLLDADDEEMWMAHVRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDFSSSWVCGV 180
             DLLD DD ++WM HVRQLSL+DL  H  FPF ASKS IQALPDVF   DFSSSW C V
Sbjct: 121 VTDLLDDDDVDIWM-HVRQLSLDDLIRHASFPFGASKSAIQALPDVFPTDDFSSSWACAV 180

Query: 181 CLNDEIEANDGAKQLPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           C++DEI+A DGAKQLPC+HIFHTHCIISWLEL NSCPLCRY+LPT
Sbjct: 181 CMDDEIDAKDGAKQLPCEHIFHTHCIISWLELHNSCPLCRYKLPT 219

[Close]
BLAST of CsaV3_1G007450 vs. TrEMBL
Match: tr|A0A2I4GZI1|A0A2I4GZI1_9ROSI (E3 ubiquitin-protein ligase RING1-like OS=Juglans regia OX=51240 GN=LOC109012220 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.2e-17
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS +Q LP++  ++D   S SW C VC  D  E  + AKQ
Sbjct: 174 IQQLAENDPNRYGTPP--ASKSAVQELPNITISEDLLASDSWQCAVC-KDTFELGEEAKQ 233

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKHI+H+ CI+ WLEL NSCP+CR++LPT
Sbjct: 234 MPCKHIYHSDCILPWLELHNSCPVCRHELPT 261

[Close]
BLAST of CsaV3_1G007450 vs. TrEMBL
Match: tr|A0A022PND4|A0A022PND4_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a008418mg PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS ++ LPD+   ++   S S  C VC  D  E N+ AKQ
Sbjct: 187 IQQLAENDPNRYGTPP--ASKSVVEGLPDITITQEMLTSDSSQCAVC-KDSFELNEAAKQ 246

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKH++H  CI+ WLEL NSCP+CRY+LPT
Sbjct: 247 IPCKHLYHKDCIVPWLELHNSCPVCRYELPT 274

[Close]
BLAST of CsaV3_1G007450 vs. TrEMBL
Match: tr|A0A2N9GU74|A0A2N9GU74_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30945 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.6e-16
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0 

Query: 135 VRQLSLNDLSLHEGFPFRASKSTIQALPDVFTAKDF--SSSWVCGVCLNDEIEANDGAKQ 194
           ++QL+ ND + +   P  ASKS +Q LPD+  ++D   S S  C VC  D  E ++ AKQ
Sbjct: 195 IQQLAENDPNRYGTPP--ASKSAVQGLPDIKISQDLLASDSSQCAVC-KDSFELDEVAKQ 254

Query: 195 LPCKHIFHTHCIISWLELCNSCPLCRYQLPT 224
           +PCKHI+H+ CI+ WL+L NSCP+CRY+LPT
Sbjct: 255 MPCKHIYHSDCILPWLDLHNSCPVCRYELPT 282

The following BLAST results are available for this feature:
BLAST of CsaV3_1G007450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64205.12.3e-123100.00hypothetical protein Csa_1G043080 [Cucumis sativus][more]
XP_008446033.14.3e-8272.44PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucumis melo][more]
XP_018849298.11.1e-1649.45PREDICTED: E3 ubiquitin-protein ligase RING1-like [Juglans regia][more]
XP_010508254.11.9e-1651.65PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa][more]
XP_010466163.11.9e-1651.65PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa][more]
BLAST of CsaV3_1G007450 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.16.3e-1949.45RING/U-box superfamily protein[more]
AT3G13430.14.3e-1546.07RING/U-box superfamily protein[more]
AT5G15820.15.6e-1535.71RING/U-box superfamily protein[more]
AT4G26400.27.3e-1543.18RING/U-box superfamily protein[more]
AT5G56340.12.8e-1442.70RING/U-box superfamily protein[more]
BLAST of CsaV3_1G007450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LPN7|RNG1L_ARATH1.1e-1749.45E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
sp|P0CH30|RING1_GOSHI8.2e-1647.25E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV... [more]
sp|Q7ZW78|RN181_DANRE1.3e-1346.67E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2[more]
sp|Q6AVN2|SIRP1_ORYSJ1.3e-1334.90E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI... [more]
sp|Q6GPV5|RN181_XENLA3.8e-1346.67E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1[more]
BLAST of CsaV3_1G007450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQL0|A0A0A0LQL0_CUCSA1.5e-123100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043080 PE=4 SV=1[more]
tr|A0A1S3BES6|A0A1S3BES6_CUCME2.9e-8272.44ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2I4GZI1|A0A2I4GZI1_9ROSI7.2e-1749.45E3 ubiquitin-protein ligase RING1-like OS=Juglans regia OX=51240 GN=LOC109012220... [more]
tr|A0A022PND4|A0A022PND4_ERYGU2.7e-1648.35Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a008418mg PE... [more]
tr|A0A2N9GU74|A0A2N9GU74_FAGSY3.6e-1649.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30945 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G007450.1CsaV3_1G007450.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 176..217
e-value: 4.3E-6
score: 36.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 176..218
e-value: 5.9E-11
score: 42.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 176..218
score: 11.988
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 146..223
e-value: 3.5E-16
score: 60.6
NoneNo IPR availablePANTHERPTHR44679FAMILY NOT NAMEDcoord: 135..223
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 175..218
e-value: 1.23985E-16
score: 70.0233
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 175..221

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G007450CSPI01G07480Wild cucumber (PI 183967)cpicucB001
CsaV3_1G007450CsGy1G007350Cucumber (Gy14) v2cgybcucB002
CsaV3_1G007450MELO3C002162Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G007450MELO3C002162.2Melon (DHL92) v3.6.1cucmedB022
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G007450Silver-seed gourdcarcucB0418
CsaV3_1G007450Silver-seed gourdcarcucB0529
CsaV3_1G007450Cucumber (Gy14) v1cgycucB163
CsaV3_1G007450Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G007450Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G007450Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G007450Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G007450Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G007450Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G007450Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G007450Watermelon (Charleston Gray)cucwcgB023
CsaV3_1G007450Watermelon (97103) v1cucwmB048
CsaV3_1G007450Watermelon (97103) v2cucwmbB009
CsaV3_1G007450Wax gourdcucwgoB031