Csa1G032430 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G032430
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRNA binding protein; contains IPR012677 (Nucleotide-binding, alpha-beta plait)
LocationChr1 : 3438732 .. 3442090 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGTCGTATTATAGATCTGGACTAAGAAAACTGGGGTACAATCCGCTAATATTCCGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGTTGGTTTTCTTTCTCTCAGTTGTGTATTTAGTCATAATTTGGCTGGTTATGTATGTGGAGACAATTTGGATTGCTTGAATCATTACAACTTCACGCGTGCAGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTCGAGTAGTAGTTCTCTTGTGCATTCTGAACGTTCAATTATGTTTCAATTGTCGATATCTGGCGCTAACTGTTATCATTTGTTATTAAATTCAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGTAATTTACGTGCTCTATCTTTGCAATTGATACTCTGTCTATTTTCTTCCAAACGAGTGTAATTGTTTTCTTCTGTGTTATGCATTATCCTCTTAATCGCCAAAATCCACTTCAAATGCCCATTTCTCTCATTCACTTCGATTTTGGTAATGCATACGATTAGCCTTCTTGAATTATATCTGATTTACTCAGCAACTCTAGCTGAAGACGGTAAATCCATCTATAAGAACTCTAAATAACTATAATCCACTCCAGAATTTGCGAGGTTTAATTCCTTTAACTGCCAGAGCAAGCCTTTCAGTATTTATGATATAAAATCACAGACATTATAACACACCAGTTTAGGCTTTACACAAAGGGGCAATAAACCTTGAAGTTCTCTATAATTTTAGCTAGAGAATAGATATCTAGAAAGGAAAAGCTGGATGCGATAGATTTAAAGTCGCATTTAGAGGACATAAGGTAGCGTCCATCCAGATCCAGTTATTCTTAATCATTGCTTCCTTTCCGAACTGTGGAACATTATAACTGTTATACCTTCAAACGAAAAAAAATGAACTTCAATAGATAGTTAATAACTGAATGTTCATATAAGCATTAGGTATTCATAACCTTGTTTTATTGCATTGGTGAACGTGTATATCAGCAGATAGATTACTTGTCATGGTTAGATTAACATTGTTAGGAGGAACAAAGCCAAGTGACTGAACCTGCCCTCGCAGTTTCTGTTTTACCACATACAAAACCTTGGATGGAACTCACTAGAGCTTTGCAAATGATCTAAATATTGAATAGACATTGCCTCTTCCCCTGTCTCCTGAGCCAAGTGAAACTTACCAGCAGACAGTTACTAATTCCCTCCCTCATCCTTTCCTCCTTAAAGCTTTCATATTAGCGATCACTTACCATCGAAACTAAATAGTTCCAACTAACTTCGGCTAAGGGCAGAAGTGTTTAAAGCAAAACATTAGTGTTTTTAAAATTTCACAATGATTTTTATCATTTGACTACATACTAAGAAAATTTTGAAATATGTTTTTGGGTAAATTTTCATCTTTCTAAAAGTGATTCCAACTCAATACCATTGGTGGTCATTCTCGCCTTTGCCCTTCATATTATAAGTAAACCATAGGGGAGGCTTAGGAGGCCTATCAAATACCGCAACCAAAATATAAAATGTTTCTTGAATATTCGGCATGCTCCACATAACTGATTGTAATAAAATTCAGTACAATTTAATATGGACTTGGAAGAGAACTGATTAAAGATGGTTAAACCCTAATTTGTGGCTTGACTTGTCATAGAACGATCCCTGTTCAATGAACTTGTTATATGAAAGGATTTATTTGTAATTAAAGTTTCAAACTCAAACCACACTATATTCAATATTCACGTTTATAGCTAAAAATTTGTGTATCCGAGTGCACAGTACCACTGTTAAATTTAAGTGTACTTTTTGGCCTCGAGGTTTCCTCCAATTTATAGTGACAGCTACGTTTGTCGAAGTTAACAGTCAAAGAACTTATTCCCAGGTTTATTTGATGGATATACCCTTCCCACCTCTTCTCATCGGGAAACATGAATTGATATGATATTCTCTTCTCGGATTCCATGGATAAAATTCCGATGCTTCCTAAAGAGAAAAAGGCTACTTTTGAAATCAAGCTTGTAGCTGGGAGGGTCTGATCTATGCCAACCAATTATAGAAGATTTTTGTTTTTATTTATTTATAGTAAATAAAAAGAAAAGAGAATCTGTGATGATCTTGTTGTCTTATCTTTTTTGGTGCATCTAATTTTCAATTACAGCAGCATCATGAACTAATAGGGGAAACTTTGATTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAATGCATGCTTTAGTATATAGGCATCATTGTACCCCCCAAAGTTCAGATTCATTTTTATAAGAGCCCAAACATATTTTAGGAATATATATATAACTAAGGGTTGGGCTCTGCATTGTTATTGGTTTGCGAAACCTTGATCTTGACTATATGATTATAATATAGTCTTAGTGTATTTCAGGAGCAGTGTTCTGTCTTGAAATTAAGTGGTATTAATATTGGGGATTGGTACAGTGGATAACCTAACCAAACATGAACTTCTAAGGCATGGTCTATGGTCAAGGTCCACAGGTTGTAACACGTATATGTGAATGCTTAAATCATGAGAAGCGCAGATTTTTAGAAATATTAAGAAGAGGACTTTTAGGGCTGTTGATTGATACTAGACATGTACCCGTGAGAGAAAGTGTGGGACATAGTTGAAACAAACAAGAAGGGCCCCTTCCCGTTCCGTCCGTGCTGAATTCTGTCGTCAGGAACAAAGATATAATTAAGCCAAGGACAAGTCAACGATTCCCCTTGGAATCACAGGCACCTATAGAATTTTGAAGTTTATTTAAACTAATAAGTTTCCTCGGTTTTTGTACTTAGGTTGTTCATGAACCATCAGTGTAATGCATATTAAAACTGATAATTAATGATATTGACTTTGT

mRNA sequence

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAA

Coding sequence (CDS)

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAA

Protein sequence

MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS*
Homology
[Close]
BLAST of Csa1G032430 vs. Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1 

Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           +L++ GL+F TTEESL   F  +GQ+ EV +V DR + R RGF F+ + + E+++ A+  
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 150 MHGKFLDGRVIFVEVA-KSRSELRQGLEENSS 181
           M+GK +DGR I V+ A KS ++ R G    SS
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSS 98

[Close]
BLAST of Csa1G032430 vs. Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-13
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           R ++ GL++ T+ ESL NAF S+G++++  ++ DR   R RGF F+ ++SE     AIE 
Sbjct: 9   RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68

Query: 150 MHGKFLDGRVIFVEVAKSR 169
           M+GK LDGR I V  A+SR
Sbjct: 69  MNGKELDGRNITVNQAQSR 87

[Close]
BLAST of Csa1G032430 vs. Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           +S  L   V+  S+ P +S        S++L++ GLS+ T + SL+ AF SFG++ E  +
Sbjct: 7   LSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATV 66

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRS 170
           + DR   R RGF F+ ++ E+ +  AI+ M GK L+GR I V +A  RS
Sbjct: 67  IADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 115

[Close]
BLAST of Csa1G032430 vs. Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           R ++ GL + T ++SL+NAF  +G +++  ++ DR   R RGF F+ +AS+E  ++AIE 
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 150 MHGKFLDGRVIFVEVAKSR 169
           M+G+ LDGR I V  A+SR
Sbjct: 67  MNGQDLDGRNITVNEAQSR 85

[Close]
BLAST of Csa1G032430 vs. Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1 

Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           R ++ GL++ T E SL  AF  FG+LV+  ++ DR   R RGF F+ +  E+  + AIEG
Sbjct: 9   RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68

Query: 150 MHGKFLDGRVIFVEVAKSR 169
           M+G+ LDGR I V  A+SR
Sbjct: 69  MNGQDLDGRSITVNEAQSR 87

[Close]
BLAST of Csa1G032430 vs. TrEMBL
Match: A0A0A0LQB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.7e-92
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 

Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]
BLAST of Csa1G032430 vs. TrEMBL
Match: I3SK86_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 101/182 (55.49%), Postives = 121/182 (66.48%), Query Frame = 1 

Query: 3   AGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSIS 62
           A L   V + P P      +  S  +S      +    S+  +  TP P  S+  +    
Sbjct: 5   ANLVVGVASVPLPSPPTTNSSASPFNSKTQTQTLHLHCSQTNHRKTPFP--SSLSSPHRI 64

Query: 63  DSLLFSVACV-----SSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVE 122
               + +AC+     SSS S S+ P    PSTRLY+SGLSFRTTEESLRN FK+FGQLV+
Sbjct: 65  QGSCYLLACLPPSSESSSSSPSAKPSSSAPSTRLYVSGLSFRTTEESLRNCFKNFGQLVD 124

Query: 123 VNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEE 180
           VNLVMD+LANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAK RSELRQ  ++
Sbjct: 125 VNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQ 184

[Close]
BLAST of Csa1G032430 vs. TrEMBL
Match: A0A0L9VHN7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g045300 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-40
Identity = 101/169 (59.76%), Postives = 115/169 (68.05%), Query Frame = 1 

Query: 9   VTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFS 68
           +T     F   Q  H   ++ + T  R  S  S  + SS+PL       T     S+L  
Sbjct: 21  ITNKALTFSFTQKRHFLLLNCSRTNNRTLSFSSSFSISSSPL-------TNKGGCSVLAC 80

Query: 69  VACVSSSPSSSSS----PRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 128
           +   SS  S+SSS    P    PST+LY+SGLSFRTTEESLRNAFK+FGQLVEV LVMDR
Sbjct: 81  LPPASSESSTSSSSTAKPSSTFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDR 140

Query: 129 LANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQ 174
           +ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAK RSEL Q
Sbjct: 141 IANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQ 182

[Close]
BLAST of Csa1G032430 vs. TrEMBL
Match: A0A0S3TCC1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G216600 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-40
Identity = 101/169 (59.76%), Postives = 115/169 (68.05%), Query Frame = 1 

Query: 9   VTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFS 68
           +T     F   Q  H   ++ + T  R  S  S  + SS+PL       T     S+L  
Sbjct: 21  ITNKALTFSFTQKRHFLLLNCSRTNNRTLSFSSSFSISSSPL-------TNKGGCSVLAC 80

Query: 69  VACVSSSPSSSSS----PRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 128
           +   SS  S+SSS    P    PST+LY+SGLSFRTTEESLRNAFK+FGQLVEV LVMDR
Sbjct: 81  LPPASSESSTSSSSTAKPSSTFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDR 140

Query: 129 LANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQ 174
           +ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAK RSEL Q
Sbjct: 141 IANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQ 182

[Close]
BLAST of Csa1G032430 vs. TrEMBL
Match: A0A072UCT4_MEDTR (RNA recognition motif OS=Medicago truncatula GN=MTR_6g477870 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.9e-40
Identity = 99/167 (59.28%), Postives = 126/167 (75.45%), Query Frame = 1 

Query: 15  PFFQLQTTHHSSISST-ETRMRIRSIQSKLAYS--STPLPFFSARKTQSISDSLLFSV-A 74
           P   LQ    +SI+ T  T+++ +  +  L +S  +     FS+  + S+ +++  SV A
Sbjct: 17  PSLLLQAPLTNSITFTLNTKIKTQKHKLYLNFSQPNNITTSFSSSLSLSLRNNVHCSVLA 76

Query: 75  CVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPR 134
           C+  +  SSSS    + STRLY+SGLSFRTTEESLRNAFK+FGQLV+VNLVMD++ANRPR
Sbjct: 77  CLPPASESSSSSSSNSRSTRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPR 136

Query: 135 GFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEE 178
           GFAFLRYA+EEES+KAIEGMHGKFLDGRVIFVEVAK RSELRQG ++
Sbjct: 137 GFAFLRYATEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQGSKQ 183

[Close]
BLAST of Csa1G032430 vs. TAIR10
Match: AT1G73530.1 (AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-34
Identity = 70/118 (59.32%), Postives = 91/118 (77.12%), Query Frame = 1 

Query: 54  SARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFG 113
           SAR+ + I   L+ S  C+S+  SSS       P T+LY+SGLSFRTTE++LR+ F+ FG
Sbjct: 44  SARRRRDIGGVLISS--CLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 103

Query: 114 QLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSEL 172
            L+ +N+VMD++ANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]
BLAST of Csa1G032430 vs. TAIR10
Match: AT5G54580.1 (AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-20
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1 

Query: 74  SSPSSSSSPRR--YTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRG 133
           S  + S +P R    PST L++SGLS RTT E LR AF  FG++ +  +V DR++   +G
Sbjct: 39  SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98

Query: 134 FAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 180
           F F+RYA+ E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 99  FGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]
BLAST of Csa1G032430 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 1 

Query: 88  STRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAI 147
           S +L++S LS  TT++SLR  F  FGQ+ E  L+ D    RP+GF F+ + SE++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 148 EGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 181
           + + GK +DGR+IFVEVAK+  E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]
BLAST of Csa1G032430 vs. TAIR10
Match: AT5G06210.1 (AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-19
Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 1 

Query: 66  LFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRL 125
           L SV  ++SS S   + RR   S +L+I GLSF TTE+ L  AF   GQ+VE  +VMDR+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVAS-KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRV 71

Query: 126 ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQG 175
           ++R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK++  L  G
Sbjct: 72  SDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]
BLAST of Csa1G032430 vs. TAIR10
Match: AT2G37510.1 (AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 52/119 (43.70%), Postives = 72/119 (60.50%), Query Frame = 1 

Query: 54  SARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFG 113
           S R+  + S SLL S +      S+ +SPR       L++SGLS  TT E L++AF SFG
Sbjct: 6   SFRRLVAGSSSLLSSPSLCVRRCSTLTSPR-------LFVSGLSRLTTNEKLQDAFASFG 65

Query: 114 QLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELR 173
           QLV+  ++ DR + R +GF F+ YA+ E+++KA   M+ KFLDG VIFV+ A+ R   R
Sbjct: 66  QLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 117

[Close]
BLAST of Csa1G032430 vs. NCBI nr
Match: gi|778656774|ref|XP_011649648.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 

Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]
BLAST of Csa1G032430 vs. NCBI nr
Match: gi|659066336|ref|XP_008439477.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis melo])

HSP 1 Score: 310.1 bits (793), Expect = 2.6e-81
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 1 

Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSPS    PRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSPS----PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENSS
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]
BLAST of Csa1G032430 vs. NCBI nr
Match: gi|778656777|ref|XP_011649654.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.3e-77
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]
BLAST of Csa1G032430 vs. NCBI nr
Match: gi|388505224|gb|AFK40678.1| (unknown [Lotus japonicus])

HSP 1 Score: 177.6 bits (449), Expect = 2.0e-41
Identity = 101/182 (55.49%), Postives = 121/182 (66.48%), Query Frame = 1 

Query: 3   AGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSIS 62
           A L   V + P P      +  S  +S      +    S+  +  TP P  S+  +    
Sbjct: 5   ANLVVGVASVPLPSPPTTNSSASPFNSKTQTQTLHLHCSQTNHRKTPFP--SSLSSPHRI 64

Query: 63  DSLLFSVACV-----SSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVE 122
               + +AC+     SSS S S+ P    PSTRLY+SGLSFRTTEESLRN FK+FGQLV+
Sbjct: 65  QGSCYLLACLPPSSESSSSSPSAKPSSSAPSTRLYVSGLSFRTTEESLRNCFKNFGQLVD 124

Query: 123 VNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEE 180
           VNLVMD+LANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAK RSELRQ  ++
Sbjct: 125 VNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQ 184

[Close]
BLAST of Csa1G032430 vs. NCBI nr
Match: gi|920714473|gb|KOM54561.1| (hypothetical protein LR48_Vigan10g045300 [Vigna angularis])

HSP 1 Score: 172.9 bits (437), Expect = 5.0e-40
Identity = 101/169 (59.76%), Postives = 115/169 (68.05%), Query Frame = 1 

Query: 9   VTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFS 68
           +T     F   Q  H   ++ + T  R  S  S  + SS+PL       T     S+L  
Sbjct: 21  ITNKALTFSFTQKRHFLLLNCSRTNNRTLSFSSSFSISSSPL-------TNKGGCSVLAC 80

Query: 69  VACVSSSPSSSSS----PRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 128
           +   SS  S+SSS    P    PST+LY+SGLSFRTTEESLRNAFK+FGQLVEV LVMDR
Sbjct: 81  LPPASSESSTSSSSTAKPSSTFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDR 140

Query: 129 LANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQ 174
           +ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAK RSEL Q
Sbjct: 141 IANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQ 182

The following BLAST results are available for this feature:
BLAST of Csa1G032430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CIRBP_XENTR2.3e-1343.48Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1[more]
GRPA_MAIZE8.8e-1345.57Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 P... [more]
RBG4_ARATH1.2e-1237.61Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG... [more]
GRP_HORVU1.5e-1243.04Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1[more]
GRP2_SINAL1.5e-1245.57Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1[more]
BLAST of Csa1G032430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQB8_CUCSA1.7e-92100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032430 PE=4 SV=1[more]
I3SK86_LOTJA1.4e-4155.49Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0L9VHN7_PHAAN3.5e-4059.76Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g045300 PE=4 SV=1[more]
A0A0S3TCC1_PHAAN3.5e-4059.76Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G216600 PE=... [more]
A0A072UCT4_MEDTR5.9e-4059.28RNA recognition motif OS=Medicago truncatula GN=MTR_6g477870 PE=4 SV=1[more]
BLAST of Csa1G032430 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G73530.11.5e-3459.32 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G54580.12.1e-2046.30 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G46020.11.3e-1945.16 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G06210.13.0e-1945.87 RNA binding (RRM/RBD/RNP motifs) family protein[more]
AT2G37510.11.3e-1743.70 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Csa1G032430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778656774|ref|XP_011649648.1|2.5e-92100.00PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu... [more]
gi|659066336|ref|XP_008439477.1|2.6e-8188.89PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis melo][more]
gi|778656777|ref|XP_011649654.1|2.3e-77100.00PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cu... [more]
gi|388505224|gb|AFK40678.1|2.0e-4155.49unknown [Lotus japonicus][more]
gi|920714473|gb|KOM54561.1|5.0e-4059.76hypothetical protein LR48_Vigan10g045300 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR003954RRM_dom_euk
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:1900871 chloroplast mRNA modification
biological_process GO:0016554 cytidine to uridine editing
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU119150cucumber EST collection version 3.0transcribed_cluster
CU155212cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G032430.1Csa1G032430.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU119150CU119150transcribed_cluster
CU155212CU155212transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 91..160
score: 5.9
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 90..163
score: 4.9
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 89..167
score: 19
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 90..163
score: 0.
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 74..172
score: 1.0
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 75..173
score: 3.76
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 86..174
score: 7.6