Cucsa.112520 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTGGGGTACAATCCGCTAATATTCCGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGTTGGTTTTCTTTCTCTCAGTTGTGTATTTAGTCATAATTTGGCTGGTTATGTATGTGGAGACAATTTGGATTGCTTGAATCATTACAACTTCACGCGTGCAGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTCGAGTAGTAGTTCTCTTGTGCATTCTGAACGTTCAATTATGTTTCAATTGTCGATATCTGGCGCTAACTGTTATCATTTGTTATTAAATTCAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGTAATTTACGTGCTCTATCTTTGCAATTGATACTCTGTCTATTTTCTTCCAAACGAGTGTAATTGTTTTCTTCTGTGTTATGCATTATCCTCTTAATCGCCAAAATCCACTTCAAATGCCCATTTCTCTCATTCACTTCGATTTTGGTAATGCATACGATTAGCCTTCTTGAATTATATCTGATTTACTCAGCAACTCTAGCTGAAGACGGTAAATCCATCTATAAGAACTCTAAATAACTATAATCCACTCCAGAATTTGCGAGGTTTAATTCCTTTAACTGCCAGAGCAAGCCTTTCAGTATTTATGATATAAAATCACAGACATTATAACACACCAGTTTAGGCTTTACACAAAGGGGCAATAAACCTTGAAGTTCTCTATAATTTTAGCTAGAGAATAGATATCTAGAAAGGAAAAGCTGGATGCGATAGATTTAAAGTCGCATTTAGAGGACATAAGGTAGCGTCCATCCAGATCCAGTTATTCTTAATCATTGCTTCCTTTCCGAACTGTGGAACATTATAACTGTTATACCTTCAAACGAAAAAAAaTGAACTTCAATAGATAGTTAATAACTGAATGTTCATATAAGCATTAGGTATTCATAACCTTGTTTTATTGCATTGGTGAACGTGTATATCAGCAGATAGATTACTTGTCATGGTTAGATTAACATTGTTAGGAGGAACAAAGCCAAGTGACTGAACCTGCCCTCGCAGTTTCTGTTTTACCACATACAAAACCTTGGATGGAACTCACTAGAGCTTTGCAAATGATCTAAATATTGAATAGACATTGCCTCTTCCCCTGTCTCCTGAGCCAAGTGAAACTTACCAGCAGACAGTTACTAATTCCCTCCCTCATCCTTTCCTCCTTAAAGCTTTCATATTAGCGATCACTTACCATCGAAACTAAATAGTTCCAACTAACTTCGGCTAAGGGCAGAAGTGTTTAAAGCAAAACATTAGTGTTTTTAAAATTTCACAATGATTTTTATCATTTGACTACATACTAAGAAAATTTTGAAATATGTTTTTGGGTAAATTTTCATCTTTCTAAAAGTGATTCCAACTCAATACCATTGGTGGTCATTCTCGCCTTTGCCCTTCATATTATAAGTAAACCATAGGGGAGGCTTAGGAGGCCTATCAAATACCGCAACCAAAATATAAAATGTTTCTTGAATATTCGGCATGCTCCACATAACTGATTGTAATAAAATTCAGTACAATTTAATATGGACTTGGAAGAGAACTGATTAAAGATGGTTAAACCCTAATTTGTGGCTTGACTTGTCATAGAACGATCCCTGTTCAATGAACTTGTTATATGAAAGGATTTATTTGTAATTAAAGTTTCAAACTCAAACCACACTATATTCAATATTCACGTTTATAGCTAAAAATTTGTGTATCCGAGTGCACAGTACCACTGTTAAATTTAAGTGTACTTTTTGGCCTCGAGGTTTCCTCCAATTTATAGTGACAGCTACGTTTGTCGAAGTTAACAGTCAAAGAACTTATTCCCAGGTTTATTTGATGGATATACCCTTCCCACCTCTTCTCATCGGGAAACATGAATTGATATGATATTCTCTTCTCGGATTCCATGGATAAAATTCCGATGCTTCCTAAAGAGAAAAAGGCTACTTTTGAAATCAAGCTTGTAGCTGGGAGGGTCTGATCTATGCCAACCAATTATAGAAGATTTTTGTTTTTATTTATTTATAGTAAATAAAAAGAAAAGAGAATCTGTGATGATCTTGTTGTCTTATCTTTTTTGGTGCATCTAATTTTCAATTACAGCAGCATCATGAACTAATAGGGGAAACTTTGATTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAATGCATGCTTTAGTATATAGGCATCATTGTACCCCCCAAAGTTCAGATTCATTTTTATAAGAGCCCAAACATATTTTAGGAATATATATATAACTAAGGGTTGGGCTCTGCATTGTTATTGGTTTGCGAAACCTTGATCTTGACTATATGATTATAATATAGTCTTAGTGTATttCAGGAGCAGTGTTCTGTCTTGAAATTAAGTGGTATTAATATTGGGGATTGGTACAGTGGATAACCTAACCAAACATGAACTTCTAAGGCATGGTCTATGGTCAAGGTCCACAGGTTGTAACACGT ACTGGGGTACAATCCGCTAATATTCCGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAATGCATGCTTTAGTATATAGGCATCATTGTACCCCCCAAAGTTCAGATTCATTTTTATAAGAGCCCAAACATATTTTAGGAATATATATATAACTAAGGGTTGGGCTCTGCATTGTTATTGGTTTGCGAAACCTTGATCTTGACTATATGATTATAATATAGTCTTAGTGTATTTCAGGAGCAGTGTTCTGTCTTGAAATTAAGTGGTATTAATATTGGGGATTGGTACAGTGGATAACCTAACCAAACATGAACTTCTAAGGCATGGTCTATGGTCAAGGTCCACAGGTTGTAACACGT ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCATCTTCTTCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAA MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS*
BLAST of Cucsa.112520 vs. Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13 Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 1
BLAST of Cucsa.112520 vs. Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 8.8e-13 Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
BLAST of Cucsa.112520 vs. Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12 Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 1
BLAST of Cucsa.112520 vs. Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12 Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1
BLAST of Cucsa.112520 vs. Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12 Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1
BLAST of Cucsa.112520 vs. TrEMBL
Match: A0A0A0LQB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032430 PE=4 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 1.7e-92 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1
BLAST of Cucsa.112520 vs. TrEMBL
Match: I3SK86_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41 Identity = 101/182 (55.49%), Postives = 121/182 (66.48%), Query Frame = 1
BLAST of Cucsa.112520 vs. TrEMBL
Match: A0A0S3TCC1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G216600 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 3.5e-40 Identity = 101/169 (59.76%), Postives = 115/169 (68.05%), Query Frame = 1
BLAST of Cucsa.112520 vs. TrEMBL
Match: A0A0L9VHN7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g045300 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 3.5e-40 Identity = 101/169 (59.76%), Postives = 115/169 (68.05%), Query Frame = 1
BLAST of Cucsa.112520 vs. TrEMBL
Match: A0A072UCT4_MEDTR (RNA recognition motif OS=Medicago truncatula GN=MTR_6g477870 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 5.9e-40 Identity = 99/167 (59.28%), Postives = 126/167 (75.45%), Query Frame = 1
BLAST of Cucsa.112520 vs. TAIR10
Match: AT1G73530.1 (AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 143.3 bits (360), Expect = 1.5e-34 Identity = 70/118 (59.32%), Postives = 93/118 (78.81%), Query Frame = 1
BLAST of Cucsa.112520 vs. TAIR10
Match: AT5G54580.1 (AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 96.3 bits (238), Expect = 2.1e-20 Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 1
BLAST of Cucsa.112520 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19 Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 1
BLAST of Cucsa.112520 vs. TAIR10
Match: AT5G06210.1 (AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 92.4 bits (228), Expect = 3.0e-19 Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1
BLAST of Cucsa.112520 vs. TAIR10
Match: AT3G20930.1 (AT3G20930.1 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17 Identity = 43/96 (44.79%), Postives = 69/96 (71.88%), Query Frame = 1
BLAST of Cucsa.112520 vs. NCBI nr
Match: gi|778656774|ref|XP_011649648.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis sativus]) HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1
BLAST of Cucsa.112520 vs. NCBI nr
Match: gi|659066336|ref|XP_008439477.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis melo]) HSP 1 Score: 310.1 bits (793), Expect = 2.6e-81 Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 1
BLAST of Cucsa.112520 vs. NCBI nr
Match: gi|778656777|ref|XP_011649654.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cucumis sativus]) HSP 1 Score: 297.0 bits (759), Expect = 2.3e-77 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1
BLAST of Cucsa.112520 vs. NCBI nr
Match: gi|388505224|gb|AFK40678.1| (unknown [Lotus japonicus]) HSP 1 Score: 177.6 bits (449), Expect = 2.0e-41 Identity = 101/182 (55.49%), Postives = 121/182 (66.48%), Query Frame = 1
BLAST of Cucsa.112520 vs. NCBI nr
Match: gi|920714473|gb|KOM54561.1| (hypothetical protein LR48_Vigan10g045300 [Vigna angularis]) HSP 1 Score: 172.9 bits (437), Expect = 5.0e-40 Identity = 101/169 (59.76%), Postives = 115/169 (68.05%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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