CSPI01G05320 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G05320
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RNA binding protein
Location	Chr1 : 3452033 .. 3455414 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACTAAGAAAACTGGGGTACAATCCGCTAATATTCCGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAACAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCACCTTCATCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGTTGGTTTTCTTTCTCTCAGTTGTGTATTTAGTCATAATTTGGCTGGTTATGTATGTGGAGACAATTTGGATTGCTTGAATCATTACAACTTCACGCGTGCAGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTCGAGTAGTAGTTCTCTTGTGCATTCTGAACGTTCAATTATGTCTCAATTGTCGATATCTGGCGCTAACTGTTATCATTTGTTATTAAATTCAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGTAATTTACGTGCTCTATCTTTGCAATTGATACTCTGTCTATTTTCTTCCAAACGAGTGTAATTGTTTTCTTCTGTGTTATGCATTATCCTCTTAATCGCCAAAATCCACTTCAAATGCCCATTTCTCTCATTCACTTCGATTTTGGTAATGCATACGATTAGCCTTCTTGAATTATATCTGATTTACTCAGCAACTCTAGCTGAAGACGGTAAATCCATCTATAAGAACTCTAAATAACTATAATCCACTCCAGAATTTGCGAGGTTTAATTCCTTTAACTGCCAGAGCAAGCCTTTCAGTATTTATGATATAAAATCACAGACATTATAACACACCAGTTTAGGCTTTACACAAAGGGGCAATAAACCTTGAAGTTCTCTATAATTTTAGCTAGAGAATAGATATCTAGAAAGGAAAAGCTGGATGCGATAGATTTAAAGTCGCATTTAGAGGACATAAGGTAGCGTCCATCCAGATCCAGTTATTCTTAATCATTGCTTCCTTTCCGAACTGTGGAACATTATAACTGTTATACCTTCAAACGAAAAAAAATGAACTTCAATAGATAGTTAATAGCTGAATGTTCATATAAGCATTAGGTATTCATAACCTTGTTTTATTGCATTGGTGAACGTGTATATCAGCAGATAGATTACTTGTCATGGTTAGATTAACATTGTTAGGAGGAACAAAGCCAAGTGACTGAACCTGCCCTCGCAGTTTCTGTTTTACCACATACAAAACCTTGGATGGAACTCACTAGAGCTTTGCAAATGATCTAAATATTGAATAGACATTGCCTCTTCCCCTGTCTCCTGAGCCAAGTGAAACTTACCAGCAGACAGTTACTAATTCCCTCCCTCATCCTTTCCTCCTTAAAGCTTTCATATTAGCGATCACTTACCATCGAAACTAAATAGTTCCAACTAACTTCGGCTAAGGGCAGAAGTGTTTAAAGCAAAACATTAGTGTTTTTAAAATTTCACAATGATTTTTATCATTTGACTACATACTAAGAAAATTTTGAAATATGTTTCTGGGTAAATTTTCATCTTTCTAAAAGTGATTCCAACTCAATACCATTGGTGGTCATTCTCGCCTTTGTCCTTCATATTATAAGTAAACCATGGGGAAGGCTTAGGAGGCCTATCAAATACCGCAACCAAAATATAAAATGTTTCTTGAATATTCGGCATGCTCCACATAACTGATTGTAATAAAATTCAGTACAATTTAATATGGACTTGGAAGAGAACTGATTAAAGATGGTTAAACCCTAATTTGTGGCTTGACTTGTCATAGAACGATCCCTGTTCAATGAACTTGTTATAAAAAGGATTTATTTGTAATTAAAGTTTCAAACTCAAATCACACTATATTCAATATTCACGTTTATAGCTAAAAATTTGTGTATCCGAGTGCACAGTACCACTGTTAAATTTAAGTGTACATTTTGGCCTCGAGGTTTCCTCCAATTTATAGTGACAGCTACGTTTGTCGAAGTTAACAGTCAAAGAACTTATTCCCAGGTTTATTTGATGGATATACCCTTCCCACCTCTTCTCATCGGGAAACATGAATTGATATGATATTCTCTTCTCGAATTCCATGGATAAAATTCCGATGCTTCCTAAAGAGAAAAAGGCTACTTTTGAAATCAAGCTTGTAGCTGGGAGGGTCTGATCTATGCCAACCAATTATAGAAGATTTTTGTTTTTATTTATTTATAATAAATAAAAAGAAAAGAGAATCTGTGATGATCTTGTTGTCTTATCTTTTTTGGTGCATCTAATTTTCAATTACAGCAGCATCATGAACTAATAGGGGAAACTTTGATTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAATGCATGCTTTAGTATATAGGCATCATTGTACCCCCAAAGTTCAGATTCATTTTTATAAGAGCCCAAACATATTTTAGGAATATATATATAACTAAGGGTTGGGCTCTGCATTGTTATTGGTTTGCGAAACCTTGATCTTGACTATATGATTATAATATAGTCTAAGTGTATTTTAGGAGCAGTGTTCTGTCTTGAAATTAAGTGGTATTAATATTGGGGATTGGTACAGTGGATAACCTAACCAAACATGAACTTCTAAGGCATGGTCTATGGTCAAGGTCCACAGGTTGTAACACGTATATGTGAATGCTTAAATCATGAGAAGCGCAGATTTTTAGAAATATTAAGAAGAGGACTTTTAGGGCTGTTGATTGATACTAGACATGTACCCGTGAGAGAAAGTGTGGGACATAGTTGAAACAAACAAGAAGGGCCCCTTCCCGTTCCGTCCGTGCTGAATTCTGTCGTCAGGAACAAAGATATAATTAAGCCAAGGACAAGTCAACGATTCCCCTTGGAATCACAGGCACCTATAGAATTTTGAAGTTTATTTAAACTAATAAGTTTCCTCGGTTTTTGTACTTAGGTTGTTCATGAACCATCAGTGTAATGCATATTAAAACTGATAATTAATGATATTGACTTTGTAATGACAAATGTTGTGGTCAAGGTGTTGGAGAATAAAGGAGGAA

mRNA sequence

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAACAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCACCTTCATCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAA

Coding sequence (CDS)

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAACAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCACCTTCATCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAA

Homology

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BLAST of CSPI01G05320 vs. Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.0e-14
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 1


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           +L++ GL+F TTEESL   F  +GQ+ EV +V DR + R RGF F+ + + E+++ A+  
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 150 MHGKFLDGRVIFVEVA-KSRSELRQGLEENSS 181
           M+GK +DGR I V+ A KS ++ R G    SS
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSS 98

[Close]

BLAST of CSPI01G05320 vs. Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-13
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           R ++ GL++ T+ ESL NAF S+G++++  ++ DR   R RGF F+ ++SE     AIE 
Sbjct: 9   RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68

Query: 150 MHGKFLDGRVIFVEVAKSR 169
           M+GK LDGR I V  A+SR
Sbjct: 69  MNGKELDGRNITVNQAQSR 87

[Close]

BLAST of CSPI01G05320 vs. Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.7e-13
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           R ++ GL + T ++SL+NAF  +G +++  ++ DR   R RGF F+ +AS+E  ++AIE 
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 150 MHGKFLDGRVIFVEVAKSR 169
           M+G+ LDGR I V  A+SR
Sbjct: 67  MNGQDLDGRNITVNEAQSR 85

[Close]

BLAST of CSPI01G05320 vs. Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.7e-13
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           R ++ GL++ T E SL  AF  FG+LV+  ++ DR   R RGF F+ +  E+  + AIEG
Sbjct: 9   RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68

Query: 150 MHGKFLDGRVIFVEVAKSR 169
           M+G+ LDGR I V  A+SR
Sbjct: 69  MNGQDLDGRSITVNEAQSR 87

[Close]

BLAST of CSPI01G05320 vs. Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           R ++ GL++ T  E+L  AF +FGQ+++  ++ DR   R RGF F+ ++SE+    AIE 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 150 MHGKFLDGRVIFVEVAKSR 169
           M+GK LDGR I V  A+SR
Sbjct: 69  MNGKELDGRNITVNQAQSR 87

[Close]

BLAST of CSPI01G05320 vs. TrEMBL
Match: A0A0A0LQB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-89
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 1


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH+SISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPS SSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of CSPI01G05320 vs. TrEMBL
Match: I3SK86_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-40
Identity = 101/182 (55.49%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 3   AGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSIS 62
           A L   V + P P      +  +  +S      +    S+  +  TP P  S+  +    
Sbjct: 5   ANLVVGVASVPLPSPPTTNSSASPFNSKTQTQTLHLHCSQTNHRKTPFP--SSLSSPHRI 64

Query: 63  DSLLFSVACV-----SSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVE 122
               + +AC+     SSS SPS+ P    PSTRLY+SGLSFRTTEESLRN FK+FGQLV+
Sbjct: 65  QGSCYLLACLPPSSESSSSSPSAKPSSSAPSTRLYVSGLSFRTTEESLRNCFKNFGQLVD 124

Query: 123 VNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEE 180
           VNLVMD+LANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAK RSELRQ  ++
Sbjct: 125 VNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQ 184

[Close]

BLAST of CSPI01G05320 vs. TrEMBL
Match: A0A072UCT4_MEDTR (RNA recognition motif OS=Medicago truncatula GN=MTR_6g477870 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.5e-38
Identity = 99/167 (59.28%), Postives = 125/167 (74.85%), Query Frame = 1


Query: 15  PFFQLQTTHHNSISST-ETRMRIRSIQSKLAYS--STPLPFFSARKTQSISDSLLFSV-A 74
           P   LQ    NSI+ T  T+++ +  +  L +S  +     FS+  + S+ +++  SV A
Sbjct: 17  PSLLLQAPLTNSITFTLNTKIKTQKHKLYLNFSQPNNITTSFSSSLSLSLRNNVHCSVLA 76

Query: 75  CVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPR 134
           C+  +   SSS    + STRLY+SGLSFRTTEESLRNAFK+FGQLV+VNLVMD++ANRPR
Sbjct: 77  CLPPASESSSSSSSNSRSTRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPR 136

Query: 135 GFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEE 178
           GFAFLRYA+EEES+KAIEGMHGKFLDGRVIFVEVAK RSELRQG ++
Sbjct: 137 GFAFLRYATEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQGSKQ 183

[Close]

BLAST of CSPI01G05320 vs. TrEMBL
Match: A0A0S3TCC1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G216600 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.2e-38
Identity = 101/169 (59.76%), Postives = 114/169 (67.46%), Query Frame = 1


Query: 9   VTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFS 68
           +T     F   Q  H   ++ + T  R  S  S  + SS+PL       T     S+L  
Sbjct: 21  ITNKALTFSFTQKRHFLLLNCSRTNNRTLSFSSSFSISSSPL-------TNKGGCSVLAC 80

Query: 69  VACVSSSPSPSSS----PRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 128
           +   SS  S SSS    P    PST+LY+SGLSFRTTEESLRNAFK+FGQLVEV LVMDR
Sbjct: 81  LPPASSESSTSSSSTAKPSSTFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDR 140

Query: 129 LANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQ 174
           +ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAK RSEL Q
Sbjct: 141 IANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQ 182

[Close]

BLAST of CSPI01G05320 vs. TrEMBL
Match: A0A0L9VHN7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g045300 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.2e-38
Identity = 101/169 (59.76%), Postives = 114/169 (67.46%), Query Frame = 1


Query: 9   VTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFS 68
           +T     F   Q  H   ++ + T  R  S  S  + SS+PL       T     S+L  
Sbjct: 21  ITNKALTFSFTQKRHFLLLNCSRTNNRTLSFSSSFSISSSPL-------TNKGGCSVLAC 80

Query: 69  VACVSSSPSPSSS----PRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 128
           +   SS  S SSS    P    PST+LY+SGLSFRTTEESLRNAFK+FGQLVEV LVMDR
Sbjct: 81  LPPASSESSTSSSSTAKPSSTFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDR 140

Query: 129 LANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQ 174
           +ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAK RSEL Q
Sbjct: 141 IANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQ 182

[Close]

BLAST of CSPI01G05320 vs. TAIR10
Match: AT1G73530.1 (AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 141.0 bits (354), Expect = 7.4e-34
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 1


Query: 54  SARKTQSISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFG 113
           SAR+ + I   L+ S     SS SP SS     P T+LY+SGLSFRTTE++LR+ F+ FG
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSG--PKTKLYVSGLSFRTTEDTLRDTFEQFG 103

Query: 114 QLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSEL 172
            L+ +N+VMD++ANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of CSPI01G05320 vs. TAIR10
Match: AT5G54580.1 (AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 1


Query: 74  SSPSPSSSPRR--YTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRG 133
           S  + S +P R    PST L++SGLS RTT E LR AF  FG++ +  +V DR++   +G
Sbjct: 39  SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98

Query: 134 FAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 180
           F F+RYA+ E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 99  FGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of CSPI01G05320 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 94.4 bits (233), Expect = 7.9e-20
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 1


Query: 88  STRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAI 147
           S +L++S LS  TT++SLR  F  FGQ+ E  L+ D    RP+GF F+ + SE++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 148 EGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 181
           + + GK +DGR+IFVEVAK+  E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]

BLAST of CSPI01G05320 vs. TAIR10
Match: AT5G06210.1 (AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1


Query: 66  LFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRL 125
           L SV  ++SS S   + RR   S +L+I GLSF TTE+ L  AF   GQ+VE  +VMDR+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVAS-KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRV 71

Query: 126 ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQG 175
           ++R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK++  L  G
Sbjct: 72  SDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of CSPI01G05320 vs. TAIR10
Match: AT3G20930.1 (AT3G20930.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 87.8 bits (216), Expect = 7.4e-18
Identity = 38/79 (48.10%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           +L+I+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AFL Y +EE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 150 MHGKFLDGRVIFVEVAKSR 169
           M+GK ++G +I V+VAK++
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: gi|778656774|ref|XP_011649648.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 1.5e-89
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 1


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH+SISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPS SSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: gi|659066336|ref|XP_008439477.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 2.2e-80
Identity = 161/180 (89.44%), Postives = 169/180 (93.89%), Query Frame = 1


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHN+I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSPS    PRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSPS----PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENSS
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: gi|778656777|ref|XP_011649654.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-74
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 1


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH+SISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPS SSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: gi|388505224|gb|AFK40678.1| (unknown [Lotus japonicus])

HSP 1 Score: 173.7 bits (439), Expect = 2.9e-40
Identity = 101/182 (55.49%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 3   AGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSIS 62
           A L   V + P P      +  +  +S      +    S+  +  TP P  S+  +    
Sbjct: 5   ANLVVGVASVPLPSPPTTNSSASPFNSKTQTQTLHLHCSQTNHRKTPFP--SSLSSPHRI 64

Query: 63  DSLLFSVACV-----SSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVE 122
               + +AC+     SSS SPS+ P    PSTRLY+SGLSFRTTEESLRN FK+FGQLV+
Sbjct: 65  QGSCYLLACLPPSSESSSSSPSAKPSSSAPSTRLYVSGLSFRTTEESLRNCFKNFGQLVD 124

Query: 123 VNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEE 180
           VNLVMD+LANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAK RSELRQ  ++
Sbjct: 125 VNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQ 184

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: gi|747079524|ref|XP_011086967.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Sesamum indicum])

HSP 1 Score: 170.6 bits (431), Expect = 2.5e-39
Identity = 99/183 (54.10%), Postives = 123/183 (67.21%), Query Frame = 1


Query: 10  TAAPKPFFQLQTTHHNSI----------SSTETRMRIRSIQSKLAYSSTPLPFFSARKT- 69
           T A +P     TT H+ I           +    + +   ++K    S P P  SAR   
Sbjct: 8   TKAIRPEKMASTTFHHRILPHGFLAPSPQAAAPPVTLSKFETKRRLHSPPAPLLSARSNL 67

Query: 70  -QSISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVE 129
              + +      +C+ SS +PS SP R    TRL++SGLSFRTT+ESL+NAFK+FG+LVE
Sbjct: 68  PYRLQNCNSHVASCLPSSSTPSFSPPR--SRTRLFVSGLSFRTTDESLKNAFKNFGELVE 127

Query: 130 VNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEE 181
           VNLVMD++ANRPRGFAFLRYA+EEES+KAIEGMHGKFLDGRVIFVEVAKSR+ELRQG  +
Sbjct: 128 VNLVMDKIANRPRGFAFLRYATEEESKKAIEGMHGKFLDGRVIFVEVAKSRAELRQGSSQ 187

The following BLAST results are available for this feature:

BLAST of CSPI01G05320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CIRBP_XENTR	8.0e-14	43.48	Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1	[more]
GRPA_MAIZE	4.0e-13	45.57	Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 P...	[more]
GRP_HORVU	6.7e-13	43.04	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1	[more]
GRP2_SINAL	6.7e-13	45.57	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1	[more]
GRP2_SORBI	1.2e-12	44.30	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1	[more]

BLAST of CSPI01G05320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB8_CUCSA	1.1e-89	98.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032430 PE=4 SV=1	[more]
I3SK86_LOTJA	2.0e-40	55.49	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A072UCT4_MEDTR	2.5e-38	59.28	RNA recognition motif OS=Medicago truncatula GN=MTR_6g477870 PE=4 SV=1	[more]
A0A0S3TCC1_PHAAN	3.2e-38	59.76	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G216600 PE=...	[more]
A0A0L9VHN7_PHAAN	3.2e-38	59.76	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g045300 PE=4 SV=1	[more]

BLAST of CSPI01G05320 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73530.1	7.4e-34	60.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	6.1e-20	46.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	7.9e-20	45.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	1.1e-18	45.87	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	7.4e-18	48.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CSPI01G05320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656774\|ref\|XP_011649648.1\|	1.5e-89	98.89	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]
gi\|659066336\|ref\|XP_008439477.1\|	2.2e-80	89.44	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis melo]	[more]
gi\|778656777\|ref\|XP_011649654.1\|	2.4e-74	98.69	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cu...	[more]
gi\|388505224\|gb\|AFK40678.1\|	2.9e-40	55.49	unknown [Lotus japonicus]	[more]
gi\|747079524\|ref\|XP_011086967.1\|	2.5e-39	54.10	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR003954	RRM_dom_euk
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G05320.1	CSPI01G05320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 91..160 score: 5.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..163 score: 4.9
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 89..167 score: 19
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 90..163 score: 0.
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 74..172 score: 1.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 75..173 score: 3.09
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 86..174 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G05320	Cla018632	Watermelon (97103) v1	cpiwmB066
CSPI01G05320	Csa1G032430	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G05320	MELO3C001961	Melon (DHL92) v3.5.1	cpimeB024
CSPI01G05320	ClCG04G012480	Watermelon (Charleston Gray)	cpiwcgB059
CSPI01G05320	Lsi02G000470	Bottle gourd (USVL1VR-Ls)	cpilsiB021
CSPI01G05320	MELO3C001961.2	Melon (DHL92) v3.6.1	cpimedB023
CSPI01G05320	CsaV3_1G005220	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G05320	Cla97C04G079470	Watermelon (97103) v2	cpiwmbB055
CSPI01G05320	Bhi08G001627	Wax gourd	cpiwgoB034
CSPI01G05320	Cucsa.112520	Cucumber (Gy14) v1	cgycpiB137
CSPI01G05320	CmaCh01G007730	Cucurbita maxima (Rimu)	cmacpiB431
CSPI01G05320	CmoCh01G008100	Cucurbita moschata (Rifu)	cmocpiB421
CSPI01G05320	Cp4.1LG02g10070	Cucurbita pepo (Zucchini)	cpecpiB535
CSPI01G05320	CsGy1G005100	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G05320	Carg06968	Silver-seed gourd	carcpiB0556

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G05320	Cucurbita maxima (Rimu)	cmacpiB208
CSPI01G05320	Cucurbita moschata (Rifu)	cmocpiB195
CSPI01G05320	Cucurbita pepo (Zucchini)	cpecpiB519
CSPI01G05320	Silver-seed gourd	carcpiB0421