Carg06968 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06968
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA binding protein
Location	Cucurbita_argyrosperma_scaffold_065 : 610835 .. 614027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATGAAATGGGTACGATCCTCAATCTTCCAGATTACGAATTCCTGAAATTGTTTCACCGGCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACTGCCGGATTGCTATTCTCAGCTGCTCCAATACCGTTCTTTCAGCTTCAGTCCATTGACTATAACGATATCCGTTCAACCGTGACGCGCATGCGAATTCAAAGCATTCAATCCAAATTAGCTTACAGTACTACGCCACTCCCTTTCTTCTCTGTGAAGAAGACTCGTTCAATTTCAGACTCGCCGCTCTCTTCTGTGACCTGCGTCTCTTCTTCACCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTTAGTGGTTGATTTTCTTCCTCTCAATTGCGTATTTTTCCCTTCATTTAGGCGTAATTTTGCTATGTATGTAAATGCAATTTGGATTTATCGAATGGTTCCAATTCCATGAGTGTAGGACTTTCGTTTCGGACCACTGAAGAGAGTCTGCGAAATGCTTTCACAAGCTTTGGCCAACTTGTAGAAGGTCGTCGACTGCTTCAATTGTGTATTATGAACGTTCCGTTTTGTCAATTAAGTGAAATTGTTGTTATTTGGCGCTAACTTTTATCAATTGTTATAAATTTCAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGTACTTCAAATGTTTCCATAGTGCATATTATTGTTCTAAGTGTTCGCGGAAGCAGTACTATACTACCATTCACAATAGTTTTGAAAATTTTATTAAATCTCATTTGAGTTGGACAGTCTTAATGATCTTTTCTTGTTCACTGTGATTTGTAATGCATATACGACTCACTGCCTAAAGTATATTCCATTTAGTCTTCTCTAGCCTTAGAAAAATCCATCTATAAATATTCAAAATGACTATAATCTAGGAATTACCACGTTCAATTCCATCAACTGCCATCTTCAGCAAGCCTTTTTGGTACAAATAAATCTTCCTCTACTTCTGATATAAGATTATAGAATGCACAGCTCTATACAAAAAAATGTTACCTTCAATGGACTCCAATCTACGTATTTCACAAGCAGCAATAGACCTTCAAATTCTCTATAAATTTTGATACAGAGTATATGTGATGTCCCACATTGGTTGGGGAGGAGAATAAACCACCATTTATAAGGGTGTGGAAACCTTCCTCAGCAGACGCATTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGGCCCAAAGAGGACAATATCTGCTAGCGGTGAATCTGAGCCGTTACAAATGGTATCAGAGCCGGACACTGGACGCTGTGCCAGCCTTCTCGCTGTTTTCCGAGGGGGGGAGACACGAGGTGGTGTGCCAGTGAGGACGCTAGGCCCCAAAAGGGGGTGGATTTGGGGGCGGTCCCACATCGATTAGAGGAAGGAAAGAGTGCCAGCAAGGACGTTGGGCCCTGAAGGGGGGTGGATTGTGATGTCCCACATTGATTTGGGAGGAGAACAAAGGATTGTGATGTCCCACATTGATTTGGGAGGAGAACAAACCACCATTTATAAGGGCGTGAAAACATTTCCCTACCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGAAAAAGCCCAAAGAGGACAATATCTACTAGCTGTGGATCTGGGATATCCCAGTATATATCTTGATAGGAGGAGTTGGTTATAATAGATTCAAGGTAGCATTCCTCCAGATATTCCTAATCTTGCTTCCGTTCATTCAGTTATTTCTGGTCTTGCTTCGTGTTCTACCTTCTTCAAATGTCAAAATGAATTGTGTTGCTTGTGCAAGATGGCACAAATGCTTCAGTGGACATGTTTGTAGTTAAGATCTAAGCATTTGTTATACTGATAACTTCAGTTTTATTGTAAGTTTTTCAAGTTTTCAAAATTGTTCTTTATTAATTAAACAAACACTGCAGATTTTGTGAAATATTTTTAATGAATTCAAAGTACTGTTCATATTTAAAAGTCATCTCAAGCTCTTCCTAAGTATACCACAATTATATCTCCCCCAGCTCACTAGTCACTTCCACTGGCGGGCATTCTCCTTGCTCTCTGTCGCAAAGTAAATCATGTAGGAGGCTTAGGAAGCCTATAAAAGACTGCTGAAACCAAATTATCAAGCGCTTCTATAATATTCGGCTGTTCTACACAATTCATTGTTATGAAATTCTTAATATAGATTTGGAAGAGAACTGATTAGAGAAATTTCATGGCTAAACCGTAGTTACTAGCTTTACTTTGTCAGAAGACGATCACTGTTTATTGAACTTGTTATGAAAGGATTTCTTTTTATTGAACTCAAACAACATGAAATTCAATAATTCCATGTTTTTAGCGAACAATTCGTGTATACACGTTTCAGAATTGGCCAAAGTACTGTTAAATATGAGGCACTCTGTGGCAACTATATTTGTAGAAGTTAATAGTCAAAGAACTTATTCTGAGGTTTATTTAATGGATATAACCTCCCCACCTCCTCTCATTGACAAACATGCATTGATATGATATTCTTATCTCTGATTCCATGGATAAAATTCCGATGCCACCTGCTAGAGGAAAAGGCCACTTTTTAAAATCTTGCTTATATAGCTGGAGGGTATGAACTCTGCCATCTGATTATGGTTCTTTCTTTATTTCTCTTTGATATTTGATGATCCTGTTGTCTTAAATTTATTGGTGCATGTTAGTTTCAAGCCTCATAACTTCATGGGCTAATAGGGGCAACTTTGGTTTAGTTTCTGGATGGCAGGGTAATATTTGTGGAAGTTGCAAAGTCCAAATGGGAGCTTCGCCAAGGACTTAAAGAAAACTCTAGCCCATAGAGAACATTGTTTCCCTGGTATTCATTTTTCGAAGTGCTGTACTTTATCTTAGGAAAACATATATAATATATATGGACAGGCTTTGCGTTATTGTTATTGATGTGAGTAGGCTTTATCTTGTCCGTATGATATATAGTCAGTGTGTTTCAGGAGTCATATTATCTCTTGAAATTAATTGATATTAATATTGGAGATTGGTCAAGTGGATCACCTAACCAAATATGAACTTCTGAGACATGAGATATGGTCAAAGATC

mRNA sequence

AAAAATGAAATGGGTACGATCCTCAATCTTCCAGATTACGAATTCCTGAAATTGTTTCACCGGCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACTGCCGGATTGCTATTCTCAGCTGCTCCAATACCGTTCTTTCAGCTTCAGTCCATTGACTATAACGATATCCGTTCAACCGTGACGCGCATGCGAATTCAAAGCATTCAATCCAAATTAGCTTACAGTACTACGCCACTCCCTTTCTTCTCTGTGAAGAAGACTCGTTCAATTTCAGACTCGCCGCTCTCTTCTGTGACCTGCGTCTCTTCTTCACCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTTAGTGGACTTTCGTTTCGGACCACTGAAGAGAGTCTGCGAAATGCTTTCACAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTAATATTTGTGGAAGTTGCAAAGTCCAAATGGGAGCTTCGCCAAGGACTTAAAGAAAACTCTAGCCCATAGAGAACATTGTTTCCCTGGTATTCATTTTTCGAAGTGCTGTACTTTATCTTAGGAAAACATATATAATATATATGGACAGGCTTTGCGTTATTGTTATTGATGTGAGTAGGCTTTATCTTGTCCGTATGATATATAGTCAGTGTGTTTCAGGAGTCATATTATCTCTTGAAATTAATTGATATTAATATTGGAGATTGGTCAAGTGGATCACCTAACCAAATATGAACTTCTGAGACATGAGATATGGTCAAAGATC

Coding sequence (CDS)

ATGGGTACGATCCTCAATCTTCCAGATTACGAATTCCTGAAATTGTTTCACCGGCTTTCGGCTGAAGCGCCGGAGAAGACGAAAATGACTGCCGGATTGCTATTCTCAGCTGCTCCAATACCGTTCTTTCAGCTTCAGTCCATTGACTATAACGATATCCGTTCAACCGTGACGCGCATGCGAATTCAAAGCATTCAATCCAAATTAGCTTACAGTACTACGCCACTCCCTTTCTTCTCTGTGAAGAAGACTCGTTCAATTTCAGACTCGCCGCTCTCTTCTGTGACCTGCGTCTCTTCTTCACCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGGCTCTACGTTAGTGGACTTTCGTTTCGGACCACTGAAGAGAGTCTGCGAAATGCTTTCACAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCGTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGTTTCTGGATGGCAGGGTAATATTTGTGGAAGTTGCAAAGTCCAAATGGGAGCTTCGCCAAGGACTTAAAGAAAACTCTAGCCCATAG

Protein sequence

MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP

Homology

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BLAST of Carg06968 vs. NCBI nr
Match: XP_022949592.1 (organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 395.2 bits (1014), Expect = 1.4e-106
Identity = 203/205 (99.02%), Postives = 203/205 (99.02%), Query Frame = 0


Query: 1   MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM 60
           MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM
Sbjct: 1   MGTILNLPDYEFLKLFHRLSAEAPEKTKMTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRM 60

Query: 61  RIQSIQSKLAYSTTPLPFFSVKKTRSISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGL 120
           RIQSIQSKLAYSTTP PFFSVKKTRSISDSPL SVTCVSSSPSPSPRRYSPSTRLYVSGL
Sbjct: 61  RIQSIQSKLAYSTTPPPFFSVKKTRSISDSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGL 120

Query: 121 SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD 180
           SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD
Sbjct: 121 SFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLD 180

Query: 181 GRVIFVEVAKSKWELRQGLKENSSP 206
           GRVIFVEVAKSKWELRQGLKENSSP
Sbjct: 181 GRVIFVEVAKSKWELRQGLKENSSP 205

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BLAST of Carg06968 vs. NCBI nr
Match: XP_022998114.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 335.5 bits (859), Expect = 1.3e-88
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 88
           MTAGLLFSA PIPFFQLQS DYN+IRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 89  DSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148
           DSPL SVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 206
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 177

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BLAST of Carg06968 vs. NCBI nr
Match: XP_023525166.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 4.8e-88
Identity = 172/177 (97.18%), Postives = 173/177 (97.74%), Query Frame = 0


Query: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 88
           MTAGLLFSA P PFFQLQSIDYN+IRSTVTRMRIQSIQSKL YSTTPLPFFSVKKTRSIS
Sbjct: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60

Query: 89  DSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148
           DSPL SVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 206
           VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 177

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BLAST of Carg06968 vs. NCBI nr
Match: XP_008439477.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 147/178 (82.58%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 29  MTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 88
           MTAGL F  +AAP PFF LQ+  +N+IRST T MR QS QSKLAYS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 89  ISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 148
           IS+SPL SV CVSS  SPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 149 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVE+AK + ELRQGLKENSS
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

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BLAST of Carg06968 vs. NCBI nr
Match: XP_011649648.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis sativus] >KGN63973.1 hypothetical protein Csa_1G032430 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 7.8e-70
Identity = 147/180 (81.67%), Postives = 162/180 (90.00%), Query Frame = 0


Query: 29  MTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 88
           MTAGL F  +AAP PFFQLQ+  ++ I ST TRMRI+SIQSKLAYS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 89  ISDSPLSSVTCVSSSP--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNL 148
           ISDS L SV CVSSSP  S SPRRY+PSTRLY+SGLSFRTTEESLRNAF SFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 149 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

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BLAST of Carg06968 vs. TAIR10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 134.4 bits (337), Expect = 7.8e-32
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 111 PSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKA 170
           P T+LYVSGLSFRTTE++LR+ F  FG L+ +N+VMDKVANRP+GFAFLRY TEEE+ KA
Sbjct: 75  PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134

Query: 171 IEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 206
           I+GMHGKFLDGRVIFVE AK++ ++ +       P
Sbjct: 135 IQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFP 169

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BLAST of Carg06968 vs. TAIR10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-20
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 90  SPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKV 149
           S  S ++  + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V
Sbjct: 33  SRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRV 92

Query: 150 ANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENS 204
           +   +GF F+RYAT E+S K I GM GKFLDG VIF E A+ + + +    +N+
Sbjct: 93  SGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Carg06968 vs. TAIR10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 94.4 bits (233), Expect = 9.0e-20
Identity = 42/93 (45.16%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 112 STRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAI 171
           S +L+VS LS  TT++SLR  F+ FGQ+ E  L+ D    RP+GF F+ + +E++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 172 EGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           + + GK +DGR+IFVEVAK+  E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

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BLAST of Carg06968 vs. TAIR10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 91.3 bits (225), Expect = 7.6e-19
Identity = 40/79 (50.63%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 114 RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 173
           +L+++GLSF T+E++LR AF  FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 174 MHGKFLDGRVIFVEVAKSK 193
           M+GK ++G +I V+VAK+K
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Carg06968 vs. TAIR10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-18
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 100 SSPSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFA 159
           SSPS   RR S   S RL+VSGLS  TT E L++AF SFGQLV+  ++ D+ + R +GF 
Sbjct: 19  SSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFG 78

Query: 160 FLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKE 202
           F+ YAT E+++KA   M+ KFLDG VIFV+ A+ + E R+ L++
Sbjct: 79  FVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPR-EPRRPLQQ 121

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BLAST of Carg06968 vs. Swiss-Prot
Match: sp|Q9FX45|ORRM6_ARATH (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 111 PSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKA 170
           P T+LYVSGLSFRTTE++LR+ F  FG L+ +N+VMDKVANRP+GFAFLRY TEEE+ KA
Sbjct: 75  PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134

Query: 171 IEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSSP 206
           I+GMHGKFLDGRVIFVE AK++ ++ +       P
Sbjct: 135 IQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFP 169

[Close]

BLAST of Carg06968 vs. Swiss-Prot
Match: sp|Q9FIU6|ORRM2_ARATH (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-19
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 90  SPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKV 149
           S  S ++  + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V
Sbjct: 33  SRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRV 92

Query: 150 ANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENS 204
           +   +GF F+RYAT E+S K I GM GKFLDG VIF E A+ + + +    +N+
Sbjct: 93  SGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of Carg06968 vs. Swiss-Prot
Match: sp|Q8L440|ORRM1_ARATH (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 40/79 (50.63%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 114 RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 173
           +L+++GLSF T+E++LR AF  FG+LVEV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 174 MHGKFLDGRVIFVEVAKSK 193
           M+GK ++G +I V+VAK+K
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of Carg06968 vs. Swiss-Prot
Match: sp|Q6YWP9|ORRM1_ORYSJ (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-17
Identity = 41/84 (48.81%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 114 RLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 173
           RL+V+GLSF T+E++LR AF  FG+LVEV ++MDK++ R +G+AF+ Y TEE    A++ 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 174 MHGKFLDGRVIFVEVAKSKWELRQ 198
           M+G+ ++G +I V+VAK +   RQ
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of Carg06968 vs. Swiss-Prot
Match: sp|Q9FFZ6|RBP11_ARATH (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.9e-17
Identity = 47/108 (43.52%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 92  LSSVTCVSSSPSP-SPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVA 151
           L SV  ++SS S    +R   +++L++ GLSF TTE+ L  AF+  GQ+VE  +VMD+V+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVS 71

Query: 152 NRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQG 199
           +R +GF F+ +A+ +E+QKA+   +G+ L+GR IFV+ AK+K  L  G
Sbjct: 72  DRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of Carg06968 vs. TrEMBL
Match: tr|A0A1S3AYF6|A0A1S3AYF6_CUCME (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.0e-70
Identity = 147/178 (82.58%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 29  MTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 88
           MTAGL F  +AAP PFF LQ+  +N+IRST T MR QS QSKLAYS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 89  ISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 148
           IS+SPL SV CVSS  SPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 149 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVE+AK + ELRQGLKENSS
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of Carg06968 vs. TrEMBL
Match: tr|A0A0A0LQB8|A0A0A0LQB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 5.1e-70
Identity = 147/180 (81.67%), Postives = 162/180 (90.00%), Query Frame = 0


Query: 29  MTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 88
           MTAGL F  +AAP PFFQLQ+  ++ I ST TRMRI+SIQSKLAYS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 89  ISDSPLSSVTCVSSSP--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNL 148
           ISDS L SV CVSSSP  S SPRRY+PSTRLY+SGLSFRTTEESLRNAF SFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 149 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 205
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of Carg06968 vs. TrEMBL
Match: tr|A0A1S4E0R2|A0A1S4E0R2_CUCME (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.9e-57
Identity = 124/151 (82.12%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 29  MTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 88
           MTAGL F  +AAP PFF LQ+  +N+IRST T MR QS QSKLAYS+TPLPFFS +KT+S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 89  ISDSPLSSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVM 148
           IS+SPL SV CVSS  SPSPRRYSPSTRLYVSGLSFRTTEESLRNAF SFGQLVEVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 149 DKVANRPRGFAFLRYATEEESQKAIEGMHGK 178
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGK
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of Carg06968 vs. TrEMBL
Match: tr|A0A2G9I503|A0A2G9I503_9LAMI (Putative RNA-binding protein (RRM superfamily) OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02412 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.5e-40
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 92  LSSVTCVSSSPSPSPR-RYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVA 151
           +++  C  SS S SPR R++PSTRL+VSGLSFRT+E+SL NAF  FG+LVEVNLVMDK+A
Sbjct: 56  VATCLCSPSSSSSSPRTRFNPSTRLFVSGLSFRTSEDSLVNAFKKFGELVEVNLVMDKIA 115

Query: 152 NRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENS 204
           NRPRGFAFLRYATEEES+KAIEGMHGKFLDGRVIFVE+AKS+ ELRQGLK+NS
Sbjct: 116 NRPRGFAFLRYATEEESKKAIEGMHGKFLDGRVIFVEIAKSRAELRQGLKQNS 168

[Close]

BLAST of Carg06968 vs. TrEMBL
Match: tr|A0A2C9WHP3|A0A2C9WHP3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G224200 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 95  VTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDKVANRPR 154
           + C+ S  S +    SP TRLY+SGLSFRTTEESLRNAF ++GQLVEVNLVMDK+ANRPR
Sbjct: 62  LACLPSPSSSASLPQSPKTRLYISGLSFRTTEESLRNAFKNYGQLVEVNLVMDKIANRPR 121

Query: 155 GFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLK 201
           GFAFLRYATEEESQKAIEGMHGKFLDGRVIFVE AKS+ ELRQGLK
Sbjct: 122 GFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEFAKSRAELRQGLK 167

The following BLAST results are available for this feature:

BLAST of Carg06968 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949592.1	1.4e-106	99.02	organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata]	[more]
XP_022998114.1	1.3e-88	97.74	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima]	[more]
XP_023525166.1	4.8e-88	97.18	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo su...	[more]
XP_008439477.1	1.6e-70	82.58	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]
XP_011649648.1	7.8e-70	81.67	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]

BLAST of Carg06968 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73530.1	7.8e-32	65.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.8e-20	44.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	9.0e-20	45.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	7.6e-19	50.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	4.9e-18	50.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg06968 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FX45\|ORRM6_ARATH	1.4e-30	65.26	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
sp\|Q9FIU6\|ORRM2_ARATH	3.3e-19	44.74	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
sp\|Q8L440\|ORRM1_ARATH	1.4e-17	50.63	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
sp\|Q6YWP9\|ORRM1_ORYSJ	3.0e-17	48.81	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
sp\|Q9FFZ6\|RBP11_ARATH	8.9e-17	43.52	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]

BLAST of Carg06968 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYF6\|A0A1S3AYF6_CUCME	1.0e-70	82.58	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
tr\|A0A0A0LQB8\|A0A0A0LQB8_CUCSA	5.1e-70	81.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1	[more]
tr\|A0A1S4E0R2\|A0A1S4E0R2_CUCME	2.9e-57	82.12	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis mel...	[more]
tr\|A0A2G9I503\|A0A2G9I503_9LAMI	5.5e-40	77.88	Putative RNA-binding protein (RRM superfamily) OS=Handroanthus impetiginosus OX=...	[more]
tr\|A0A2C9WHP3\|A0A2C9WHP3_MANES	1.4e-38	80.19	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G224200 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR003954	RRM_dom_euk

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06968-RA	Carg06968-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 114..187 e-value: 6.0E-4 score: 29.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 114..187 e-value: 2.1E-25 score: 100.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 115..184 e-value: 1.8E-18 score: 66.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 113..191 score: 19.655
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 80..198 e-value: 1.2E-29 score: 105.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	PANTHER	PTHR45502	FAMILY NOT NAMED	coord: 85..199
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 99..197

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06968	Cla018632	Watermelon (97103) v1	carwmB0519
Carg06968	Csa1G032430	Cucumber (Chinese Long) v2	carcuB0549
Carg06968	MELO3C001961	Melon (DHL92) v3.5.1	carmeB0523
Carg06968	ClCG04G012480	Watermelon (Charleston Gray)	carwcgB0508
Carg06968	CSPI01G05320	Wild cucumber (PI 183967)	carcpiB0556
Carg06968	Cucsa.112520	Cucumber (Gy14) v1	carcgyB0597
Carg06968	CmaCh13G011140	Cucurbita maxima (Rimu)	carcmaB0729
Carg06968	CmaCh01G007730	Cucurbita maxima (Rimu)	carcmaB0731
Carg06968	CmoCh01G008100	Cucurbita moschata (Rifu)	carcmoB0708
Carg06968	Lsi02G000470	Bottle gourd (USVL1VR-Ls)	carlsiB474
Carg06968	Cp4.1LG02g10070	Cucurbita pepo (Zucchini)	carcpeB0738
Carg06968	CsGy1G005100	Cucumber (Gy14) v2	carcgybB0526
Carg06968	MELO3C001961.2	Melon (DHL92) v3.6.1	carmedB0529
Carg06968	CsaV3_1G005220	Cucumber (Chinese Long) v3	carcucB0555
Carg06968	Cla97C04G079470	Watermelon (97103) v2	carwmbB0549
Carg06968	Bhi08G001627	Wax gourd	carwgoB0631

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06968	Cucurbita pepo (Zucchini)	carcpeB0736
Carg06968	Cucumber (Chinese Long) v3	carcucB0559
Carg06968	Silver-seed gourd	carcarB414
Carg06968	Silver-seed gourd	carcarB209
Carg06968	Cucumber (Gy14) v2	carcgybB0529
Carg06968	Cucurbita moschata (Rifu)	carcmoB0706