CU119150 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU119150
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3438788 .. 3439003 (+)
Sequence length218
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

TGGGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACT
Homology
[Close]
BLAST of CU119150 vs. TrEMBL
Match: A0A0A0LQB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 37/49 (75.51%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 70  MTAGLSFTVTAAPKPFFQLQXXXXXXXXXXXXRMRIRSIQSKLAYSSTP 129
           MTAGLSFTVTAAPKPFFQLQ            RMRIRSIQSKLAYSSTP
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTP 49

Query: 130  189
           
Sbjct: 61   49

Query: 190  217
           
Sbjct: 121  49

[Close]
BLAST of CU119150 vs. NCBI nr
Match: gi|778656777|ref|XP_011649654.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 37/49 (75.51%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 70  MTAGLSFTVTAAPKPFFQLQXXXXXXXXXXXXRMRIRSIQSKLAYSSTP 129
           MTAGLSFTVTAAPKPFFQLQ            RMRIRSIQSKLAYSSTP
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTP 49

Query: 130  189
           
Sbjct: 61   49

Query: 190  217
           
Sbjct: 121  49

[Close]
BLAST of CU119150 vs. NCBI nr
Match: gi|778656774|ref|XP_011649648.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 37/49 (75.51%), Postives = 37/49 (75.51%), Query Frame = 1 

Query: 70  MTAGLSFTVTAAPKPFFQLQXXXXXXXXXXXXRMRIRSIQSKLAYSSTP 129
           MTAGLSFTVTAAPKPFFQLQ            RMRIRSIQSKLAYSSTP
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTP 49

Query: 130  189
           
Sbjct: 61   49

Query: 190  217
           
Sbjct: 121  49

[Close]
BLAST of CU119150 vs. NCBI nr
Match: gi|659066336|ref|XP_008439477.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 32/49 (65.31%), Postives = 33/49 (67.35%), Query Frame = 1 

Query: 70  MTAGLSFTVTAAPKPFFQLQXXXXXXXXXXXXRMRIRSIQSKLAYSSTP 129
           MTAGLSFTVTAAPKPFF LQ             MR +S QSKLAYSSTP
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTP 49

Query: 130  189
           
Sbjct: 61   49

Query: 190  217
           
Sbjct: 121  49

The following BLAST results are available for this feature:
BLAST of CU119150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQB8_CUCSA1.3e-0975.51Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032430 PE=4 SV=1[more]
BLAST of CU119150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778656777|ref|XP_011649654.1|1.8e-0975.51PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cu... [more]
gi|778656774|ref|XP_011649648.1|1.8e-0975.51PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu... [more]
gi|659066336|ref|XP_008439477.1|1.1e-0665.31PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Cucumis melo][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G032430Csa1G032430gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0107537G0107537EST
H0187349H0187349EST