Csa1G025830 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G025830
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	tRNA pseudouridine synthase; contains IPR001406 (Pseudouridine synthase I, TruA), IPR020103 (Pseudouridine synthase, catalytic domain)
Location	Chr1 : 2878454 .. 2884197 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGTTGTTATGATACCAAATCCGAGGGCCAGACTTGTATCACCATCAAGTGCCGGTTTTGGTTTGAAGATTCTGATGGAGAATCGAGCTCAACGAAAAGATTATCTTCACTATAACCACACTGATCGCTGCAGAAGTGCTAGATGGACTGCCAGGTTTTTCTTTTGTATAATTTTCAATATCTATCGCTTTATTTGATTTTAGATTTTACTCATAGAATGAGCTTCGTACTATTATAAATGGTAATTCAATCTTAATCTGATAAGGTTGTTGTTATGTTATTGGTAGGGAAAGCTATCAATTCATGTATGGAAGGCCGTGGCAAGAAGTGCTTGATTTTTACTCTCACGCTGTTAATGGAAGGTTTTCTCTTAGCTCATTGCTTGGAACTGAGGCGAGTCTCTAATATCTTCGTTATCTTTAAATTGTTTCCTCTTTCTCTATAATTATTCCGTTTCTTGAAATAATAGCAACGAAATCGTGAGCTAGGACTCCGTTTCCCTCCCTTGCCAGTTTATGAATCCTTCTCTTTTGTCATAATGTTCTAGTTGGACAATTTATTTTTTTTTGCTACCTCTCGATATTGATATCTATGGTTAATTTTCATGCAATGGAAGTCCTAACTCTTAAAGGAATGTTATTTCTTCCGTTCAGATTATTTGATTTTTAAAGTAATGGCTACCATCTAAGATTATCAATTAACCATCATATAAATGGCTAAAAGGCCAAAGGTTTAATCTATGGCAGGCAACTACCTAGGAATCAATTTTAGTTTCTTTGACATACAAATGTTGTACGGTCAGACAAGTTGTTCCATGAGATTCTTCAAGGTGGATATAAGTTGGTCCGAACATTACAATATCAAAACAATAATGATAATAAATAATAATCTAAAACTGTCAATTGCTTGGACATTGTATTGTGAATGTTCTAAATTTAGTTTGGATTATAAGTTCTGGAGATGATTTTAAATGAAATCCTTGCTATTGGTTATTACACTTGATTTACCAATCATGTTTATGTCTTTTTAATTTTTTTTTTTTATAAATTCCATTGGTCGATTCAAATTAGGAGAAATGAAGATGAAAATTTTGTTCTTTAATTATCTTGTACAAAACAAGAAGATATCATTTATTTTTTATTTATTTATTGTATACAGTATTTTATCAACAGATATGTCGTGATCATGATGATGCTGAGACTCCATTGATTTACAACTCAGCAGAGTTAAACAGAGCTGCAGTTAAAGATAAGACTGGGAGATGGGCAAGGGCAACATTTAAGATAGTTCTTTCCTACGATGGAAATTCTTTTGATGGGTGGCAAAAGCAGCCAGGCTTGAATACTGTTCAGGGGTAAGCTTATTTCGTGGAATTTACCATATGCGAAAGTAATATTGTATGCAATTGGGAGCTAGCGACACTCTTTTCGTTATTGAATTTTTAAACTAAAGAGTTGTTAAGAACCTGTAAATGTAATTTATAGTAAGTGTTTGAGAACTTAGTTCTAGAGGTACAATTGAAAATCTCATACCTTCATTTCAAATGAAACTTTTGTCTTGTGGACAATGCCCAAGTTAAGTCATTCAACCTTGTTAATCTCACCTTTCTGGTACTGTATCTTCTTATTCCAGTACGAGAGTTTAAAGTACTGTTTTAATATCTTTAGATTAGATGTATAAATAGTTTGATTTCAATCCAGAGATGGTAAACACTGATGTATCTGGATTATGTCGACTTGCATCCTTTGGCAGCTTGGTAGAAAGATCTCTAGGGAAGTTTGTAGATGAGAAGAAAGCTCAGATGCTCAAAGATAAATGCTTACCATTAGAAGGATGTGCTTTGGTTGCTGGGCGCACTGACAAAGGGGTGACAGCTCTGCGACAAGTTTGCTCATTTTGTATGTTGGCTTCCTAATCTCTGTTGATATGATTTTTTATTGTATATTTAATTGCATAACTATGTTTTCAGTTTTAGATTCTATCTCAGCTCAAAAATGAACTCTTATATTAGAATAAATTATATCTTTTATATCATTTCTTGACATCTTTAATAGTTGCAATTAATTGCTTGTCACATCCATTTCATGAACTCCACTTTGGTTGTGCTTCACCTGAACGCTCCAATAGTCAAATAGGTGATGTTGTCCTGACTGCCCTATGATCGAAGTGTTGGAAGGGTATGCTAGATTACCTGTTAAAAGCAATTAGTATTGAAACAAGGGAGGTGCGAAGTCCAAGAATTACTTCCCAGTAAAATGTAGCAATAGTAAAAAAAAAAATTGTACTTCTGACGGCATTTTAATTAGGTTAATATTTAGAAGCTTTTACCAAGATTCCCTTCGCTGATTATTACTTCAAGTAGTTTTGCAGAGTGGAAGTTGGGAGGGGATTTCTTTTTACCATCTGTAGAATTCCTTGTGTGATGCTATGGAAAGGAAAATTTAGCAAAGAAGATTGAAGTTTTTATTGGAATTCCAATCTGTGCCATTATTCCAACAATAGGATTCAAGCCAGAAATCCAAACTACTAGGCCGTCACAGTACCAATAATACAATTCAACCTGAACCATGCTTCCTTTGGTTTGAATTCTTTAACATAAATACATACATGGAACTTGTTTGGAAAGAGCAATTACTGTATGTGTACTTTTTGAGTTTTTGCTGTTTCTTTCCATTTTGGTTTTAAATTATCCTTGGAGGGTAATATTCTCTTTCTGACTTCACCCACTTAATTTTGTTATTGTTTTCTATTTTAGAGAATCACTGTTCATCTTTGGTTAAACTCCCACACTTGTAGATACTTGGCGTACCGATGTTAAACCTCAAGACATTGAAGATTCCATCAATAGTGCAGCTCCTGGAAAACTCAGAACATCCTCTGTCTCTCAGGTAAAATTAAGGTTATTGGAAATGATTGTGGTGCCCCCTGGAAAACTCACAAGTTACTTACTGTTGTAGGTCTCTCGAATCTTCCATCCAAACTTCTCTGCTAAATGGAGACGATATCTATATATTCTTCCTCTGAATGATGGAGAGAACATGGAGCCAGATTCTACAACTTGGGAAAATGTAGAAAATAGAGAAGAGGAAAATTTTGTTAAAATAGAAGCCTCAAATGGTGAAAAATGTGTGGACGGGATTCATGATAATTTGGTCCTCAGTCCAAATGACCAGGAGCTTGTGTCGGCTGATAAACCTCAAACATTTAGTATAACGAGGGTTAACCAACTACTTAGGAAACTAGAAGGGAAATTGTTGTCGTACAAGATGTTTGCACGTGACACCAAAGCATCGAGAAATGAGTGAGAATCATGAACTGATCCAATTATTGGCTCTTTTTTGGAAGTCATTCTATCTTCTAATTTCATTAATTCTTGTTGTTTTTCTTCTTATTCCGTTTATAAAGAATATCACCAATTTTCTCTTATTTCTGCTAGTCACTCCTCTAGGAGCCATTTATAGAAATGTGAAGAGGGATGAATCCCGCGATGTGCTCTTTTGTGGGATCTCTGGATTGAAAGGAACAACAGTTTTTTCTCAATTTCCTTCATACAAATTAGGAAAATGAGGAGAGTTGGATAATGGAAAATTTTAAGCATCAACATGATAATTTTGTTAAGCCTCAGTTTTAAGGATCACTAACTGTTATTAAGTATTGTCTGTTCCATGAACAGTTCTTTTATGTTCTTCGTTTGGTTCTTCTGGTTCTCATTCTGTATTGAGTTCTCTTGAGTGAGGAAAAATAAATAAAACAATTAGCAGGATAGATAGTCACTGTGTTTCTTCTGGTTCTCATTCTGTATTGAGTTCTTTTGATTAGTGTAATTGTGGTATTAAAAAATACAGGGAGAAAGAGATTAATGTGCTTGTATCCTGAACATTAGCAGGATAGATAGTCACTGACTAAACAAAGTTAGTTATAGAATTTATATGCCAAGATTTTTGTTTTGTTTTTGTCAAATATGTGATTAAAGTACTTGCTCGCTTTCTTTTGAGAAATGCTTTCTTATCAATGATGGGAAGATGTTCAGAACTTTCTGACATGTACTAATGACAACTATTGTCCTTTTCAGAGGTCCACCTACGGAGTGTTTTGTTTATCATGCACGAGCAGCGGAAACTAGATTGCCATGCTTGGTATGTTTCCTACTTGGCCTCTTCATACTCTTGTCCTCCTTTTCTATGATTATACTTTTCCTTCTACACTTGAACCCCTCTTGAAATCTATCTGTAGTTTTGTAACAATATTCTATACTTCATAGCTCACTTACACTGAAATGAGGTATTACCATGTTATTTGCATTGTGCTTTCGACTGATTCAGAACACTGAAAACAGATGATGAGCTTGTGGAAGAGTATGAACCGAGGAAACTTAAATAGAAAATTACTTTTACATTGTATCTTCAATGTGAAGTATTGGCATAGCAAACTACCTGTAGTTATGTGCTCGATTGAACGAAAATTCAAATTTTATTGACAATGGTTGCTCTTGGCCTCTCTTCTGTTTCTCTTCTTCTTATTAGTTTTTGTATTCTAATCTTCTCTCTCTTTTCTCTCTAAACTTTTTTTCTTTTAGGAGAGGTTGTTTTCCTCCTATTTATATAGGGCTTTGTTTCTTAAATTGATACCTTATTCTTGGTTCGTTTTGGCTTGGATTTTCGGGATAATGAAAGCATGTTTCCTATTCCTCTCAACATGCTATCAACATTTTTCTCTATTGAACTGAATCTTTTATAGCATCAGCTGGGCTTCTTCCTACATTTAATCTTTTTCTGTCCAATTTTTTTTAATCTAATGAACTAATGAATGCAAGTACTCCAAATTTGGGTACCTGACTTAGTGTTCTATTGACAGGAGCAAGGAGTAGGAAGAAGTGTTATGTGCGTTGAGCTGGTTGCTAATCGCTTCCTGCGGAAGGTATCATATCATCTCTGGGGTTGACCTATGCTATAGATTATATTGTACAGATCGCAAAATTGCTCTATTAAAATTCAGATAATTCTTTCTTCAACTGCTTAAACTTGAGAGTTAATATCTTAAATATCAGGCTATCAACAAGAGGAATTTCCCCTTCGTTTTAGCTAAATGAAAAAATGGCACTAATTATTACGTCTTCGGTTAAATCCTTGGTTTTTTTAGCAGTTCAACCAACTAATGTTTAATATTCTACGAGTTTTCTTCACACTCAAATGTTGTAGGGTCAAGTTGTGAGATTTGTTGAGGTGTGCTATGTATAAGCTGACTTAGACACTCACAGATATTAAAATAACGATAATAATAATGGATTCTAACGATGACCCTTGCAGATGGTACGTGTACTTGTTGCAACAGCAATTAGAGAAGCAGCTGCTGGTGCAGGAGAGGATGCGTTACTAGAGCTGATGGATGCCACATGTCGACGTGCCACTGCACCACCTGCGCCTCCTGATGGCCTCAGTCTTGTTGATGTAGGGTATACAGATTTTGATTCACAAATTTGCTTCATTTTAAATGACTAATTTTGCCCTTCATTTTATAACGTATCACCCACCCTTTTGATTGGTGGTGTTATTATTACCATATTGATTTAGTGATTGCATTGTAGGGTTTGAAAGTTGGTTTGCGTTTTATCACACATCACTTTAGGGTGTTTTGTATTTGTGTATGGTGAGTGACTAAGTTTTGTTTTGATCTTCACACGGATCCGTAAGACGACTCTAAATAGAATGAATTAAAGTTTATATAAAACAAATTACTACTTAACT

mRNA sequence

ATGATACCAAATCCGAGGGCCAGACTTGTATCACCATCAAGTGCCGGTTTTGGTTTGAAGATTCTGATGGAGAATCGAGCTCAACGAAAAGATTATCTTCACTATAACCACACTGATCGCTGCAGAAGTGCTAGATGGACTGCCAGGGAAAGCTATCAATTCATGTATGGAAGGCCGTGGCAAGAAGTGCTTGATTTTTACTCTCACGCTGTTAATGGAAGGTTTTCTCTTAGCTCATTGCTTGGAACTGAGATATGTCGTGATCATGATGATGCTGAGACTCCATTGATTTACAACTCAGCAGAGTTAAACAGAGCTGCAGTTAAAGATAAGACTGGGAGATGGGCAAGGGCAACATTTAAGATAGTTCTTTCCTACGATGGAAATTCTTTTGATGGGTGGCAAAAGCAGCCAGGCTTGAATACTGTTCAGGGCTTGGTAGAAAGATCTCTAGGGAAGTTTGTAGATGAGAAGAAAGCTCAGATGCTCAAAGATAAATGCTTACCATTAGAAGGATGTGCTTTGGTTGCTGGGCGCACTGACAAAGGGGTGACAGCTCTGCGACAAGTTTGCTCATTTTATACTTGGCGTACCGATGTTAAACCTCAAGACATTGAAGATTCCATCAATAGTGCAGCTCCTGGAAAACTCAGAACATCCTCTGTCTCTCAGGTCTCTCGAATCTTCCATCCAAACTTCTCTGCTAAATGGAGACGATATCTATATATTCTTCCTCTGAATGATGGAGAGAACATGGAGCCAGATTCTACAACTTGGGAAAATGTAGAAAATAGAGAAGAGGAAAATTTTGTTAAAATAGAAGCCTCAAATGGTGAAAAATGTGTGGACGGGATTCATGATAATTTGGTCCTCAGTCCAAATGACCAGGAGCTTGTGTCGGCTGATAAACCTCAAACATTTAGTATAACGAGGGTTAACCAACTACTTAGGAAACTAGAAGGGAAATTGTTGTCGTACAAGATGTTTGCACGTGACACCAAAGCATCGAGAAATGAAGGTCCACCTACGGAGTGTTTTGTTTATCATGCACGAGCAGCGGAAACTAGATTGCCATGCTTGGAGCAAGGAGTAGGAAGAAGTGTTATGTGCGTTGAGCTGGTTGCTAATCGCTTCCTGCGGAAGATGGTACGTGTACTTGTTGCAACAGCAATTAGAGAAGCAGCTGCTGGTGCAGGAGAGGATGCGTTACTAGAGCTGATGGATGCCACATGTCGACGTGCCACTGCACCACCTGCGCCTCCTGATGGCCTCAGTCTTGTTGATGTAGGGTATACAGATTTTGATTCACAAATTTGCTTCATTTTAAATGACTAA

Coding sequence (CDS)

ATGATACCAAATCCGAGGGCCAGACTTGTATCACCATCAAGTGCCGGTTTTGGTTTGAAGATTCTGATGGAGAATCGAGCTCAACGAAAAGATTATCTTCACTATAACCACACTGATCGCTGCAGAAGTGCTAGATGGACTGCCAGGGAAAGCTATCAATTCATGTATGGAAGGCCGTGGCAAGAAGTGCTTGATTTTTACTCTCACGCTGTTAATGGAAGGTTTTCTCTTAGCTCATTGCTTGGAACTGAGATATGTCGTGATCATGATGATGCTGAGACTCCATTGATTTACAACTCAGCAGAGTTAAACAGAGCTGCAGTTAAAGATAAGACTGGGAGATGGGCAAGGGCAACATTTAAGATAGTTCTTTCCTACGATGGAAATTCTTTTGATGGGTGGCAAAAGCAGCCAGGCTTGAATACTGTTCAGGGCTTGGTAGAAAGATCTCTAGGGAAGTTTGTAGATGAGAAGAAAGCTCAGATGCTCAAAGATAAATGCTTACCATTAGAAGGATGTGCTTTGGTTGCTGGGCGCACTGACAAAGGGGTGACAGCTCTGCGACAAGTTTGCTCATTTTATACTTGGCGTACCGATGTTAAACCTCAAGACATTGAAGATTCCATCAATAGTGCAGCTCCTGGAAAACTCAGAACATCCTCTGTCTCTCAGGTCTCTCGAATCTTCCATCCAAACTTCTCTGCTAAATGGAGACGATATCTATATATTCTTCCTCTGAATGATGGAGAGAACATGGAGCCAGATTCTACAACTTGGGAAAATGTAGAAAATAGAGAAGAGGAAAATTTTGTTAAAATAGAAGCCTCAAATGGTGAAAAATGTGTGGACGGGATTCATGATAATTTGGTCCTCAGTCCAAATGACCAGGAGCTTGTGTCGGCTGATAAACCTCAAACATTTAGTATAACGAGGGTTAACCAACTACTTAGGAAACTAGAAGGGAAATTGTTGTCGTACAAGATGTTTGCACGTGACACCAAAGCATCGAGAAATGAAGGTCCACCTACGGAGTGTTTTGTTTATCATGCACGAGCAGCGGAAACTAGATTGCCATGCTTGGAGCAAGGAGTAGGAAGAAGTGTTATGTGCGTTGAGCTGGTTGCTAATCGCTTCCTGCGGAAGATGGTACGTGTACTTGTTGCAACAGCAATTAGAGAAGCAGCTGCTGGTGCAGGAGAGGATGCGTTACTAGAGCTGATGGATGCCACATGTCGACGTGCCACTGCACCACCTGCGCCTCCTGATGGCCTCAGTCTTGTTGATGTAGGGTATACAGATTTTGATTCACAAATTTGCTTCATTTTAAATGACTAA

Protein sequence

MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDSQICFILND*

Homology

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BLAST of Csa1G025830 vs. Swiss-Prot
Match: TRUA_LEPBP (tRNA pseudouridine synthase A OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=truA PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-12
Identity = 53/179 (29.61%), Postives = 78/179 (43.58%), Query Frame = 1


Query: 120 FKIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGR 179
           + +++ YDG  F+GWQKQ  L TVQ  +E +LG  +    A  L            VAGR
Sbjct: 4   YALLVEYDGTHFNGWQKQKNLPTVQSSIESALGIILRRNPASRLS-----------VAGR 63

Query: 180 TDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRR 239
           TD GV AL  VC+F T         +  S+N+  P  +   +V +V   FH  FS   R 
Sbjct: 64  TDTGVHALGMVCNFKTEHPIPNFHKLLVSLNALTPTGVSVKNVVEVPSDFHARFSCTGRE 123

Query: 240 YLYILPLNDGENMEPDSTT--------WENVE--------NREEENFVKIEASNGEKCV 283
           Y+Y L  +  E+   +           WE V+         ++  +F K ++  G++ V
Sbjct: 124 YIYKLYYSKYESSFVEGRAFWVKGHIDWERVKKQLQVLVGEKDFRSFTKAKSMAGKRAV 171

[Close]

BLAST of Csa1G025830 vs. Swiss-Prot
Match: TRUA_LEPBA (tRNA pseudouridine synthase A OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=truA PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-12
Identity = 53/179 (29.61%), Postives = 78/179 (43.58%), Query Frame = 1


Query: 120 FKIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGR 179
           + +++ YDG  F+GWQKQ  L TVQ  +E +LG  +    A  L            VAGR
Sbjct: 4   YALLVEYDGTHFNGWQKQKNLPTVQSSIESALGIILRRNPASRLS-----------VAGR 63

Query: 180 TDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRR 239
           TD GV AL  VC+F T         +  S+N+  P  +   +V +V   FH  FS   R 
Sbjct: 64  TDTGVHALGMVCNFKTEHPIPNFHKLLVSLNALTPTGVSVKNVVEVPSDFHARFSCTGRE 123

Query: 240 YLYILPLNDGENMEPDSTT--------WENVE--------NREEENFVKIEASNGEKCV 283
           Y+Y L  +  E+   +           WE V+         ++  +F K ++  G++ V
Sbjct: 124 YIYKLYYSKYESSFVEGRAFWVKGHIDWERVKKQLQVLVGEKDFRSFTKAKSMAGKRAV 171

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BLAST of Csa1G025830 vs. Swiss-Prot
Match: TRUA_CHLTE (tRNA pseudouridine synthase A OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) GN=truA PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-12
Identity = 49/130 (37.69%), Postives = 67/130 (51.54%), Query Frame = 1


Query: 116 ARATFKIVLSYDGNSFDGWQKQPG-LNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCA 175
           ++ T K+ + YDG  + GWQ+QPG + TVQG +ER L + + E          + ++G  
Sbjct: 4   SKRTIKMQIEYDGTGYSGWQRQPGDVVTVQGEIERVLERIMQEP---------VSIDG-- 63

Query: 176 LVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFS 235
             AGRTD GV A RQV SF T  + +    +  S NS  P  +R +++ Q    FH  FS
Sbjct: 64  --AGRTDSGVHARRQVASFATC-SPMPLGRLIYSANSLLPSTIRINAMRQAPESFHARFS 119

Query: 236 AKWRRYLYIL 245
           A  R Y Y L
Sbjct: 124 ATSREYRYFL 119

HSP 2 Score: 35.4 bits (80), Expect = 1.9e+00
Identity = 23/59 (38.98%), Postives = 27/59 (45.76%), Query Frame = 1


Query: 373 LVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGY 432
           + ANRFLR MVR LVA  I        E A   ++++  R     PA   GL L  V Y
Sbjct: 189 IEANRFLRSMVRFLVAGMIEVGMGRLEEGAFARMLESGHRPPKLKPADAAGLFLWKVRY 247

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BLAST of Csa1G025830 vs. Swiss-Prot
Match: TRUA_DICT6 (tRNA pseudouridine synthase A OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=truA PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-12
Identity = 55/169 (32.54%), Postives = 84/169 (49.70%), Query Frame = 1


Query: 120 FKIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGR 179
           +K+ LSY G  F G+QKQPG  TVQG +E+ L         ++L D+ + + G    AGR
Sbjct: 4   WKVELSYIGKDFWGFQKQPGKRTVQGELEKVL---------KLLFDEDIKVIG----AGR 63

Query: 180 TDKGVTALRQVCSFYTWRT-DVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWR 239
           TD GV AL QV +F T  + +     +   +N   PG ++   V  V   FH  +SAK R
Sbjct: 64  TDAGVHALGQVVNFKTKESKNFSCDKLYKVLNKLLPGDIKIKKVEIVDDNFHARYSAKRR 123

Query: 240 RYLYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHD 288
            Y+Y++  N+ +N+      W  +    +++ + + A+       GIHD
Sbjct: 124 WYIYVIYNNEEKNLFLRDYCWW-INKPLDKDLLNLSAN----LFKGIHD 154

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BLAST of Csa1G025830 vs. Swiss-Prot
Match: TRUA_BORDL (tRNA pseudouridine synthase A OS=Borrelia duttonii (strain Ly) GN=truA PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.3e-12
Identity = 54/165 (32.73%), Postives = 85/165 (51.52%), Query Frame = 1


Query: 124 LSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKG 183
           ++YDG+ + G+Q QP   T+QG +E++L K +++ K ++              AGRTDKG
Sbjct: 8   IAYDGSLYHGFQIQPTKPTIQGEIEKALEK-INKTKVKIQS------------AGRTDKG 67

Query: 184 VTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYI 243
           V A RQ+ SFY  + ++  ++++ +INS     +R   +  VS  F P F AK R+Y Y 
Sbjct: 68  VHAKRQIISFYI-KININLKNLKTAINSLLKNDIRIIKLKYVSNEFQPRFHAKKRKYTYY 127

Query: 244 LPLNDGENMEPDSTTWENVENREEENFVKIEASNG-EKCVDGIHD 288
           + LN+ EN  P    WE  +       + I   N   + + G+HD
Sbjct: 128 I-LNN-ENHYP----WEEYQAYYVRKKLNINRLNTMAEMLIGLHD 152

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BLAST of Csa1G025830 vs. TrEMBL
Match: A0A0A0LV59_CUCSA (tRNA pseudouridine synthase OS=Cucumis sativus GN=Csa_1G025830 PE=3 SV=1)

HSP 1 Score: 903.3 bits (2333), Expect = 1.2e-259
Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 1


Query: 1   MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPW 60
           MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPW
Sbjct: 1   MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPW 60

Query: 61  QEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATF 120
           QEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATF
Sbjct: 61  QEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATF 120

Query: 121 KIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRT 180
           KIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRT
Sbjct: 121 KIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRT 180

Query: 181 DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRY 240
           DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRY
Sbjct: 181 DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRY 240

Query: 241 LYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVS 300
           LYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVS
Sbjct: 241 LYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVS 300

Query: 301 ADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL 360
           ADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL
Sbjct: 301 ADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL 360

Query: 361 EQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAP 420
           EQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAP
Sbjct: 361 EQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAP 420

Query: 421 PDGLSLVDVGYTDFDSQICFILND 445
           PDGLSLVDVGYTDFDSQICFILND
Sbjct: 421 PDGLSLVDVGYTDFDSQICFILND 444

[Close]

BLAST of Csa1G025830 vs. TrEMBL
Match: A0A067JV59_JATCU (tRNA pseudouridine synthase OS=Jatropha curcas GN=JCGZ_19781 PE=3 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 4.8e-160
Identity = 282/416 (67.79%), Postives = 336/416 (80.77%), Query Frame = 1


Query: 26  RAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGTEI 85
           +AQ K Y+HYNHTD C+  RWTARES+QFMY RPW+EV++FYS+ VNG  SLS L GT+I
Sbjct: 38  QAQNKVYVHYNHTDSCKFLRWTARESFQFMYARPWEEVVEFYSNVVNGHLSLSELFGTQI 97

Query: 86  CRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQG 145
              HD+A+    +  ++L   + KDK GRWAR TFKIVLSY G SFDGWQKQPGLNTVQG
Sbjct: 98  HFAHDNAKIQDSFVESKLEDFSDKDKFGRWARVTFKIVLSYHGASFDGWQKQPGLNTVQG 157

Query: 146 LVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDI 205
           LVERSLG FVDEKK+Q LKDKC PLEGCA+VAGRTDKGV+A +Q+CSFYTWR DV+P +I
Sbjct: 158 LVERSLGTFVDEKKSQQLKDKCKPLEGCAVVAGRTDKGVSAFQQICSFYTWRKDVRPHEI 217

Query: 206 EDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEPDSTTWENVENR 265
           ED+INS+APGKLR  SVS+VSR FHPNFSAKWRRYLYI PLNDGEN E D   + + +  
Sbjct: 218 EDAINSSAPGKLRVVSVSEVSRAFHPNFSAKWRRYLYIFPLNDGENGE-DVENFSSHDKY 277

Query: 266 EEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSADKPQTFSITRVNQLLRKLEGKLLS 325
           +E+     E ++ EK    + ++ ++  ++ E     KP+TFS+ RVNQLL++LEGKLLS
Sbjct: 278 DEQRPGSGELTSKEK----LDESFIIDKDEPE--GTIKPRTFSVCRVNQLLQQLEGKLLS 337

Query: 326 YKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRV 385
           YK+FARDTKASRNEGPPTECF+YHARA E RLPC + G GR V+C+ELVANRFLRKMVRV
Sbjct: 338 YKIFARDTKASRNEGPPTECFIYHARATEMRLPCSDHGQGRKVICIELVANRFLRKMVRV 397

Query: 386 LVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDSQICFI 442
           LVAT+IREAAAGA +DALL+LMDA+CRRA+APPAPPDGL LVDVGYT+FD Q C I
Sbjct: 398 LVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLVDVGYTEFDPQSCII 446

[Close]

BLAST of Csa1G025830 vs. TrEMBL
Match: B9SDU2_RICCO (tRNA pseudouridine synthase OS=Ricinus communis GN=RCOM_1712560 PE=3 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 2.4e-159
Identity = 284/421 (67.46%), Postives = 331/421 (78.62%), Query Frame = 1


Query: 24  ENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGT 83
           E + Q K Y HYNHTD C+S RWTARES+QFMY RPWQEV DFYS+ VNGR S   L  +
Sbjct: 26  ETKTQNKIYFHYNHTDSCKSFRWTARESFQFMYARPWQEVSDFYSNVVNGRLSFLELFRS 85

Query: 84  EICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTV 143
           ++    DDA+     N  EL   + +D+ GRWAR  FKI LSY G SFDGWQKQPGLNTV
Sbjct: 86  QMHFVRDDAKIQEDSNKTELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTV 145

Query: 144 QGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQ 203
           QGLVE+SLGKFVDEKKAQ LK+ C PLEGCA+VAGRTDKGV+ALRQVCSFYTWR DV+P 
Sbjct: 146 QGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPH 205

Query: 204 DIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEP--DSTTWEN 263
           +IED+INS+APGK+R  SVS+VSR+FHPNFSAKWRRYLYI P+NDGE+ E   DS   EN
Sbjct: 206 EIEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDSEDLEN 265

Query: 264 VENREEENFVKIEASNG-EKCVDGIHDNLVLSPNDQELVSADKPQTFSITRVNQLLRKLE 323
           + + E+ +    E  NG  +     H   +++ +  EL  A KP+ FSI RVNQLL++LE
Sbjct: 266 LRSYEKYD----EQRNGCAELTSEEHVEELITSDKDELEGAKKPRIFSICRVNQLLQQLE 325

Query: 324 GKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLR 383
           GKLLSYK+FARDTKASRN GPPTECF+YHARA E RLPC + G GR VMCVELVANRFLR
Sbjct: 326 GKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLPCPDHGEGRKVMCVELVANRFLR 385

Query: 384 KMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDSQICF 442
           KMVRVLVAT+IREAAAGA +DALL+LMDA+CRRA+APPAPPDGL L DVGYT+FD+QIC 
Sbjct: 386 KMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFDAQICI 442

[Close]

BLAST of Csa1G025830 vs. TrEMBL
Match: W9S3H9_9ROSA (tRNA pseudouridine synthase OS=Morus notabilis GN=L484_008208 PE=3 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 4.5e-158
Identity = 289/428 (67.52%), Postives = 337/428 (78.74%), Query Frame = 1


Query: 18  GLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSL 77
           G+ + ME  +  KDY+HYNH+D CR +RWTARESYQFMYGRPWQ+VLDFYS+ VNG  S 
Sbjct: 24  GVVVEMETHSTNKDYVHYNHSDPCRFSRWTARESYQFMYGRPWQQVLDFYSNLVNGTTSF 83

Query: 78  SSLLGT----EICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYDGNSFDG 137
           SSL       ++  D  DAE P I +  ++     ++++GRWARATFK+VL Y G SFDG
Sbjct: 84  SSLFPLHKKYQVDDDDYDAEIPEISDD-KVKLKKSEERSGRWARATFKVVLGYHGASFDG 143

Query: 138 WQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSF 197
           WQKQPGLNTVQGLVERSLG+FVDEKKAQ+LKDKCLPLE C +VAGRTDKGVTAL+QVCSF
Sbjct: 144 WQKQPGLNTVQGLVERSLGRFVDEKKAQLLKDKCLPLEACTVVAGRTDKGVTALQQVCSF 203

Query: 198 YTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENME 257
           YTWR D+  QDIE++IN+AA GKL+  SVS+VSR+FHPNFSAKWRRYLYI P ND E+ E
Sbjct: 204 YTWRKDITCQDIEEAINNAALGKLKAKSVSEVSRVFHPNFSAKWRRYLYIFPFNDEEDEE 263

Query: 258 PDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSADKPQTFSITRVN 317
             +   EN+E  E     KIE+  GE   D    NL++  + +EL S  KP +FS++RV+
Sbjct: 264 QSNKNGENLETYE-----KIESGCGE-WNDESFGNLIID-DSEELESGKKPSSFSVSRVD 323

Query: 318 QLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGRSVMCVEL 377
           QLLR LEGKLLSYKMFARDTKASRNEGPPTECF+YHARAAE RLP  +   GR +MCVEL
Sbjct: 324 QLLRLLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPTSDCTEGRKIMCVEL 383

Query: 378 VANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTD 437
           VANRFLRKMVRVLVAT+IREAAAGA EDALL+LMDATCRRATAPPAPPDGL LVDVGY++
Sbjct: 384 VANRFLRKMVRVLVATSIREAAAGAEEDALLKLMDATCRRATAPPAPPDGLCLVDVGYSE 443

Query: 438 FDSQICFI 442
           F    C I
Sbjct: 444 FKPNNCLI 443

[Close]

BLAST of Csa1G025830 vs. TrEMBL
Match: A0A061GRT3_THECC (tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_039779 PE=3 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 9.4e-156
Identity = 284/426 (66.67%), Postives = 338/426 (79.34%), Query Frame = 1


Query: 22  LMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLL 81
           +MEN A+ K Y+HYNH+D C SARWTARESY+FMY R WQ+V+DFYS+ VNGR +LS+L 
Sbjct: 32  VMENEAENKVYVHYNHSDSCSSARWTARESYRFMYDRAWQDVIDFYSNVVNGRLTLSTLF 91

Query: 82  GTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLN 141
           GTE    HDD+ET  + +          +++GRW R TFKI++SY+G +FDGWQKQPGLN
Sbjct: 92  GTETSI-HDDSETVEVSDEKG-------ERSGRWERVTFKIIISYNGGAFDGWQKQPGLN 151

Query: 142 TVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVK 201
           TVQ +VERSLG+FVDEKKAQ+LK+K  PLEGCA+VAGRTDKGV+A+RQVCSFYTWR DVK
Sbjct: 152 TVQEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVK 211

Query: 202 PQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEPDSTTWEN 261
           P DIED+INS APGKLR  SVS+VSR+FHPNFSAKWR YLYI PL+   N E +  + EN
Sbjct: 212 PWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLS---NQEIEKQSCEN 271

Query: 262 VENREEENFVKIEASNGEK--CVDGIH----DNLVLSPNDQELVSADKPQTFSITRVNQL 321
              +E ENF+     N ++   ++ I     +NL++S N   L +A+KP  FS+ RVNQL
Sbjct: 272 --KKEVENFISDGNYNEQRNGYLENIRWENVENLIISDN-MGLEAANKPTRFSVCRVNQL 331

Query: 322 LRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGRSVMCVELVA 381
           L++LE KLLSYKMFARDTKASRN GPPTECF+YHARAAE R+PC + G GR VMCVELVA
Sbjct: 332 LQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCSDHGEGREVMCVELVA 391

Query: 382 NRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFD 441
           NRFLRKMVRVLVAT+IREAAAGA EDALL+LM ATCRRATAPPAPPDGL LVDVGYT+FD
Sbjct: 392 NRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFD 443

[Close]

BLAST of Csa1G025830 vs. TAIR10
Match: AT5G35400.2 (AT5G35400.2 Pseudouridine synthase family protein)

HSP 1 Score: 385.2 bits (988), Expect = 5.5e-107
Identity = 200/362 (55.25%), Postives = 246/362 (67.96%), Query Frame = 1


Query: 32  YLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGTEICRDHDD 91
           Y+HY+H D C  ARW ARE+++FMY RPWQ VLDFYS+AV G  S+ SL   +    HDD
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65

Query: 92  AETPLIYNSAELNRAAVKD-KTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQGLVERS 151
             T  +   +E   +  KD ++GRW R  FKIVLSY+G SFDGWQKQP L+TVQG+VE+S
Sbjct: 66  GITEEMLLESEPETSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKS 125

Query: 152 LGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSIN 211
           LG FVDE+KAQ+LK KC PLEG  LVAGRTDKGV+AL QVCSFYTWR D++P  IED+IN
Sbjct: 126 LGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIEDAIN 185

Query: 212 SAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEPDSTTWENV---ENREE 271
             A GKLR  S+S+VSR FHPNFSAKWRRYLYI PL+D E +       EN    EN+++
Sbjct: 186 KDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDENKKK 245

Query: 272 ENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSADKPQTFSITRVNQLLRKLEGKLLSYK 331
           +    +     E+ +    D L +      L   +KP  FS+++V+QLL+ L+GK+LSYK
Sbjct: 246 QRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVLSYK 305

Query: 332 MFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLV 390
           MFARDTKA+RNEGPPTECF+YHARAAE RL         S   V  VA  F   +V V++
Sbjct: 306 MFARDTKAARNEGPPTECFMYHARAAEIRL---------SSSVVHFVAWVFGGSIVLVIL 358

HSP 2 Score: 122.9 bits (307), Expect = 5.1e-28
Identity = 63/83 (75.90%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 359 CLEQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPP 418
           C+E   GR VMCVELVANRFLRKMVRVLVAT+IREAAAGA +DALL+L++A+CRRATAPP
Sbjct: 391 CVE---GRRVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLLEASCRRATAPP 450

Query: 419 APPDGLSLVDVGYTDFDSQICFI 442
           AP +GL L DVGYTDFD Q   I
Sbjct: 451 APSEGLCLFDVGYTDFDPQTSLI 470

[Close]

BLAST of Csa1G025830 vs. TAIR10
Match: AT1G20370.1 (AT1G20370.1 Pseudouridine synthase family protein)

HSP 1 Score: 55.8 bits (133), Expect = 7.7e-08
Identity = 41/136 (30.15%), Postives = 62/136 (45.59%), Query Frame = 1


Query: 114 RWARATFKIVLSYDGNSFDGWQKQPGLNTVQGLVERSL---GKFVDEKKAQMLKDKCLPL 173
           ++ R    IV ++ G  + G QK PG  T++G +E +L   G   D        D+  P 
Sbjct: 54  KYRRRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPD-------ADRNKPR 113

Query: 174 EGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFH 233
                 + RTDKGV+A+ QV S    R  V P    + +NS  P ++R     +V+  F 
Sbjct: 114 NYEWARSARTDKGVSAVGQVVS---GRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFS 173

Query: 234 PNFSAKWRRYLYILPL 247
                  RRY+Y++P+
Sbjct: 174 SKKFCDRRRYVYLIPV 179

[Close]

BLAST of Csa1G025830 vs. TAIR10
Match: AT1G76120.1 (AT1G76120.1 Pseudouridine synthase family protein)

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-07
Identity = 39/125 (31.20%), Postives = 57/125 (45.60%), Query Frame = 1


Query: 122 IVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTD 181
           I+ ++ G  + G QK PG  T++G +E +L       ++   K K       A    RTD
Sbjct: 26  IIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSA----RTD 85

Query: 182 KGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYL 241
           KGV+A+ QV S    R  V P    + +NS  P ++R      V+  F        RRY+
Sbjct: 86  KGVSAVGQVVS---GRFIVDPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYV 143

Query: 242 YILPL 247
           Y+LP+
Sbjct: 146 YLLPV 143

[Close]

BLAST of Csa1G025830 vs. NCBI nr
Match: gi|449439176|ref|XP_004137363.1| (PREDICTED: uncharacterized protein LOC101205562 [Cucumis sativus])

HSP 1 Score: 903.3 bits (2333), Expect = 1.7e-259
Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 1


Query: 1   MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPW 60
           MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPW
Sbjct: 1   MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPW 60

Query: 61  QEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATF 120
           QEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATF
Sbjct: 61  QEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATF 120

Query: 121 KIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRT 180
           KIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRT
Sbjct: 121 KIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRT 180

Query: 181 DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRY 240
           DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRY
Sbjct: 181 DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRY 240

Query: 241 LYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVS 300
           LYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVS
Sbjct: 241 LYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVS 300

Query: 301 ADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL 360
           ADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL
Sbjct: 301 ADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL 360

Query: 361 EQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAP 420
           EQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAP
Sbjct: 361 EQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAP 420

Query: 421 PDGLSLVDVGYTDFDSQICFILND 445
           PDGLSLVDVGYTDFDSQICFILND
Sbjct: 421 PDGLSLVDVGYTDFDSQICFILND 444

[Close]

BLAST of Csa1G025830 vs. NCBI nr
Match: gi|659107096|ref|XP_008453520.1| (PREDICTED: uncharacterized protein LOC103494203 [Cucumis melo])

HSP 1 Score: 867.8 bits (2241), Expect = 8.0e-249
Identity = 427/444 (96.17%), Postives = 433/444 (97.52%), Query Frame = 1


Query: 1   MIPNPRARLVSPSSAGFGLKILMENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPW 60
           MIPNPRARLVSPSSAGFGLKILMENRAQ+KDYLHYNHTDRCR+ARWTARES+QFMYGRPW
Sbjct: 1   MIPNPRARLVSPSSAGFGLKILMENRAQQKDYLHYNHTDRCRNARWTARESFQFMYGRPW 60

Query: 61  QEVLDFYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATF 120
           QEVLDFYSHAVNGR SLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARA F
Sbjct: 61  QEVLDFYSHAVNGRLSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARANF 120

Query: 121 KIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRT 180
           KIVLSY GNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCA+VAGRT
Sbjct: 121 KIVLSYHGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCAVVAGRT 180

Query: 181 DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRY 240
           DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRT SVSQVSRIFHPNFSAKWRRY
Sbjct: 181 DKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTLSVSQVSRIFHPNFSAKWRRY 240

Query: 241 LYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVS 300
           LYILPLNDGENMEPDS  WE+VENREEEN VKIEA NGEKCVDGIHDNLVLSPND ELVS
Sbjct: 241 LYILPLNDGENMEPDSAIWEDVENREEENCVKIEALNGEKCVDGIHDNLVLSPNDDELVS 300

Query: 301 ADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL 360
           ADKPQTFSI RVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL
Sbjct: 301 ADKPQTFSIRRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCL 360

Query: 361 EQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAP 420
           EQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELM ATCRRATAPPAP
Sbjct: 361 EQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMVATCRRATAPPAP 420

Query: 421 PDGLSLVDVGYTDFDSQICFILND 445
           PDGLSLVDVGYT+FDSQICFILND
Sbjct: 421 PDGLSLVDVGYTEFDSQICFILND 444

[Close]

BLAST of Csa1G025830 vs. NCBI nr
Match: gi|1009129371|ref|XP_015881730.1| (PREDICTED: tRNA pseudouridine synthase A [Ziziphus jujuba])

HSP 1 Score: 584.3 bits (1505), Expect = 1.8e-163
Identity = 298/439 (67.88%), Postives = 347/439 (79.04%), Query Frame = 1


Query: 9   LVSPSSAGFGLKILMENRAQR---KDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLD 68
           L+S S+     KI MEN  Q    K Y HYNHTD CR +RWTARESYQFMY RPW +VLD
Sbjct: 16  LLSNSNGNSITKIHMENFCQPPPDKVYFHYNHTDPCRFSRWTARESYQFMYARPWNQVLD 75

Query: 69  FYSHAVNGRFSLSSLLGTEICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLS 128
           FYS+ +N   SLS+L G E    H+ AE P I  +AEL   + ++++GRWAR TFKIVLS
Sbjct: 76  FYSNLINANLSLSALFGPETYHVHNAAEIPNISETAELKSVSPENRSGRWARLTFKIVLS 135

Query: 129 YDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVT 188
           Y G SFDGWQKQPGLNTVQGLVE+SLGKFVDEKKAQ+LKDKCLPLEGCA+VAGRTDKGVT
Sbjct: 136 YHGGSFDGWQKQPGLNTVQGLVEKSLGKFVDEKKAQVLKDKCLPLEGCAVVAGRTDKGVT 195

Query: 189 ALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILP 248
           AL+QVCSFYTWR D+K +DIE +INSAAPG LR  SVS+VSR+FHPNFSAKWRRYLYI P
Sbjct: 196 ALQQVCSFYTWRKDIKSEDIEVAINSAAPGTLRVKSVSEVSRVFHPNFSAKWRRYLYIFP 255

Query: 249 LNDGENMEPDSTTWENVEN-REEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSADKP 308
            NDGE+ +  S + E++E  R  E+  ++    GE   + +  NL+++ N +E+ S +KP
Sbjct: 256 FNDGEDGQQSSPSGEDIEQFRSNESGDELNNGCGESHYESV-QNLIINDN-EEIDSGNKP 315

Query: 309 QTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGV 368
           +TFS+ RVNQLL++LEGKLLSYKMFARDTKASRN GPPTECF+YHARA E RLPC +   
Sbjct: 316 KTFSVRRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFMYHARATEARLPCPDSIE 375

Query: 369 GRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGL 428
           GR VMCVELVANRFLRKMVRVLVAT+IREAAAGA EDALL+LMDATCRRATAPPAP DGL
Sbjct: 376 GRRVMCVELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMDATCRRATAPPAPADGL 435

Query: 429 SLVDVGYTDFDSQICFILN 444
            LVDVGY +F+ Q   I N
Sbjct: 436 CLVDVGYAEFNPQNRLICN 452

[Close]

BLAST of Csa1G025830 vs. NCBI nr
Match: gi|802707316|ref|XP_012084292.1| (PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas])

HSP 1 Score: 572.4 bits (1474), Expect = 6.9e-160
Identity = 282/416 (67.79%), Postives = 336/416 (80.77%), Query Frame = 1


Query: 26  RAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGTEI 85
           +AQ K Y+HYNHTD C+  RWTARES+QFMY RPW+EV++FYS+ VNG  SLS L GT+I
Sbjct: 38  QAQNKVYVHYNHTDSCKFLRWTARESFQFMYARPWEEVVEFYSNVVNGHLSLSELFGTQI 97

Query: 86  CRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQG 145
              HD+A+    +  ++L   + KDK GRWAR TFKIVLSY G SFDGWQKQPGLNTVQG
Sbjct: 98  HFAHDNAKIQDSFVESKLEDFSDKDKFGRWARVTFKIVLSYHGASFDGWQKQPGLNTVQG 157

Query: 146 LVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDI 205
           LVERSLG FVDEKK+Q LKDKC PLEGCA+VAGRTDKGV+A +Q+CSFYTWR DV+P +I
Sbjct: 158 LVERSLGTFVDEKKSQQLKDKCKPLEGCAVVAGRTDKGVSAFQQICSFYTWRKDVRPHEI 217

Query: 206 EDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEPDSTTWENVENR 265
           ED+INS+APGKLR  SVS+VSR FHPNFSAKWRRYLYI PLNDGEN E D   + + +  
Sbjct: 218 EDAINSSAPGKLRVVSVSEVSRAFHPNFSAKWRRYLYIFPLNDGENGE-DVENFSSHDKY 277

Query: 266 EEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSADKPQTFSITRVNQLLRKLEGKLLS 325
           +E+     E ++ EK    + ++ ++  ++ E     KP+TFS+ RVNQLL++LEGKLLS
Sbjct: 278 DEQRPGSGELTSKEK----LDESFIIDKDEPE--GTIKPRTFSVCRVNQLLQQLEGKLLS 337

Query: 326 YKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRV 385
           YK+FARDTKASRNEGPPTECF+YHARA E RLPC + G GR V+C+ELVANRFLRKMVRV
Sbjct: 338 YKIFARDTKASRNEGPPTECFIYHARATEMRLPCSDHGQGRKVICIELVANRFLRKMVRV 397

Query: 386 LVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDSQICFI 442
           LVAT+IREAAAGA +DALL+LMDA+CRRA+APPAPPDGL LVDVGYT+FD Q C I
Sbjct: 398 LVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLVDVGYTEFDPQSCII 446

[Close]

BLAST of Csa1G025830 vs. NCBI nr
Match: gi|255566350|ref|XP_002524161.1| (PREDICTED: tRNA pseudouridine synthase A isoform X1 [Ricinus communis])

HSP 1 Score: 570.1 bits (1468), Expect = 3.4e-159
Identity = 284/421 (67.46%), Postives = 331/421 (78.62%), Query Frame = 1


Query: 24  ENRAQRKDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGT 83
           E + Q K Y HYNHTD C+S RWTARES+QFMY RPWQEV DFYS+ VNGR S   L  +
Sbjct: 26  ETKTQNKIYFHYNHTDSCKSFRWTARESFQFMYARPWQEVSDFYSNVVNGRLSFLELFRS 85

Query: 84  EICRDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTV 143
           ++    DDA+     N  EL   + +D+ GRWAR  FKI LSY G SFDGWQKQPGLNTV
Sbjct: 86  QMHFVRDDAKIQEDSNKTELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTV 145

Query: 144 QGLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQ 203
           QGLVE+SLGKFVDEKKAQ LK+ C PLEGCA+VAGRTDKGV+ALRQVCSFYTWR DV+P 
Sbjct: 146 QGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPH 205

Query: 204 DIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEP--DSTTWEN 263
           +IED+INS+APGK+R  SVS+VSR+FHPNFSAKWRRYLYI P+NDGE+ E   DS   EN
Sbjct: 206 EIEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDSEDLEN 265

Query: 264 VENREEENFVKIEASNG-EKCVDGIHDNLVLSPNDQELVSADKPQTFSITRVNQLLRKLE 323
           + + E+ +    E  NG  +     H   +++ +  EL  A KP+ FSI RVNQLL++LE
Sbjct: 266 LRSYEKYD----EQRNGCAELTSEEHVEELITSDKDELEGAKKPRIFSICRVNQLLQQLE 325

Query: 324 GKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLR 383
           GKLLSYK+FARDTKASRN GPPTECF+YHARA E RLPC + G GR VMCVELVANRFLR
Sbjct: 326 GKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLPCPDHGEGRKVMCVELVANRFLR 385

Query: 384 KMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDSQICF 442
           KMVRVLVAT+IREAAAGA +DALL+LMDA+CRRA+APPAPPDGL L DVGYT+FD+QIC 
Sbjct: 386 KMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFDAQICI 442

The following BLAST results are available for this feature:

BLAST of Csa1G025830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRUA_LEPBP	1.7e-12	29.61	tRNA pseudouridine synthase A OS=Leptospira biflexa serovar Patoc (strain Patoc ...	[more]
TRUA_LEPBA	1.7e-12	29.61	tRNA pseudouridine synthase A OS=Leptospira biflexa serovar Patoc (strain Patoc ...	[more]
TRUA_CHLTE	1.7e-12	37.69	tRNA pseudouridine synthase A OS=Chlorobium tepidum (strain ATCC 49652 / DSM 120...	[more]
TRUA_DICT6	3.7e-12	32.54	tRNA pseudouridine synthase A OS=Dictyoglomus thermophilum (strain ATCC 35947 / ...	[more]
TRUA_BORDL	6.3e-12	32.73	tRNA pseudouridine synthase A OS=Borrelia duttonii (strain Ly) GN=truA PE=3 SV=1	[more]

BLAST of Csa1G025830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV59_CUCSA	1.2e-259	100.00	tRNA pseudouridine synthase OS=Cucumis sativus GN=Csa_1G025830 PE=3 SV=1	[more]
A0A067JV59_JATCU	4.8e-160	67.79	tRNA pseudouridine synthase OS=Jatropha curcas GN=JCGZ_19781 PE=3 SV=1	[more]
B9SDU2_RICCO	2.4e-159	67.46	tRNA pseudouridine synthase OS=Ricinus communis GN=RCOM_1712560 PE=3 SV=1	[more]
W9S3H9_9ROSA	4.5e-158	67.52	tRNA pseudouridine synthase OS=Morus notabilis GN=L484_008208 PE=3 SV=1	[more]
A0A061GRT3_THECC	9.4e-156	66.67	tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_039779 PE=3 SV=1	[more]

BLAST of Csa1G025830 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35400.2	5.5e-107	55.25	Pseudouridine synthase family protein	[more]
AT1G20370.1	7.7e-08	30.15	Pseudouridine synthase family protein	[more]
AT1G76120.1	3.8e-07	31.20	Pseudouridine synthase family protein	[more]

BLAST of Csa1G025830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439176\|ref\|XP_004137363.1\|	1.7e-259	100.00	PREDICTED: uncharacterized protein LOC101205562 [Cucumis sativus]	[more]
gi\|659107096\|ref\|XP_008453520.1\|	8.0e-249	96.17	PREDICTED: uncharacterized protein LOC103494203 [Cucumis melo]	[more]
gi\|1009129371\|ref\|XP_015881730.1\|	1.8e-163	67.88	PREDICTED: tRNA pseudouridine synthase A [Ziziphus jujuba]	[more]
gi\|802707316\|ref\|XP_012084292.1\|	6.9e-160	67.79	PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]	[more]
gi\|255566350\|ref\|XP_002524161.1\|	3.4e-159	67.46	PREDICTED: tRNA pseudouridine synthase A isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001406	PsdUridine_synth_TruA
IPR020094	Pseudouridine synthase I, TruA, N-terminal
IPR020095	PsdUridine_synth_TruA_C
IPR020097	PsdUridine_synth_TruA_a/b_dom
IPR020103	PsdUridine_synth_cat_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0009451	RNA modification

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0009982	pseudouridine synthase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0008033	tRNA processing
biological_process	GO:0009451	RNA modification
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU117607	cucumber EST collection version 3.0	transcribed_cluster
CU120115	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G025830.1	Csa1G025830.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU120115	CU120115	transcribed_cluster
CU117607	CU117607	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001406	Pseudouridine synthase I, TruA	HAMAP	MF_00171	TruA	coord: 118..431 score: 2
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 303..441 score: 3.3E-192coord: 70..265 score: 3.3E
IPR020094	Pseudouridine synthase I, TruA, N-terminal	GENE3D	G3DSA:3.30.70.580		coord: 119..235 score: 9.0
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	G3DSA:3.30.70.660		coord: 236..264 score: 9.5E-23coord: 307..433 score: 9.5
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 340..431 score: 8.
IPR020103	Pseudouridine synthase, catalytic domain	unknown	SSF55120	Pseudouridine synthase	coord: 119..259 score: 4.03E-46coord: 302..439 score: 4.03
None	No IPR available	PANTHER	PTHR11142:SF10	TRNA PSEUDOURIDINE SYNTHASE	coord: 70..265 score: 3.3E-192coord: 303..441 score: 3.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G025830	Cla018900	Watermelon (97103) v1	cuwmB095
Csa1G025830	MELO3C017384	Melon (DHL92) v3.5.1	cumeB055
Csa1G025830	ClCG06G014090	Watermelon (Charleston Gray)	cuwcgB082
Csa1G025830	Lsi06G012560	Bottle gourd (USVL1VR-Ls)	culsiB071
Csa1G025830	MELO3C017384.2	Melon (DHL92) v3.6.1	cumedB047
Csa1G025830	Cla97C06G123540	Watermelon (97103) v2	cuwmbB079
Csa1G025830	Bhi02G000128	Wax gourd	cuwgoB077
Csa1G025830	CSPI01G04590	Wild cucumber (PI 183967)	cpicuB000
Csa1G025830	Cucsa.111790	Cucumber (Gy14) v1	cgycuB137
Csa1G025830	CmaCh10G003430	Cucurbita maxima (Rimu)	cmacuB050
Csa1G025830	CmaCh11G003290	Cucurbita maxima (Rimu)	cmacuB087
Csa1G025830	CmoCh10G003720	Cucurbita moschata (Rifu)	cmocuB039
Csa1G025830	CmoCh11G003350	Cucurbita moschata (Rifu)	cmocuB076
Csa1G025830	Cp4.1LG18g06710	Cucurbita pepo (Zucchini)	cpecuB363
Csa1G025830	CsGy1G004490	Cucumber (Gy14) v2	cgybcuB001
Csa1G025830	Carg15191	Silver-seed gourd	carcuB0801
Csa1G025830	Carg09083	Silver-seed gourd	carcuB0622

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G025830	Cucurbita pepo (Zucchini)	cpecuB654