CU117607 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU117607
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptiontRNA pseudouridine synthase
LocationChr1 : 2882538 .. 2883852 (+)
Sequence length215
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGAGTGTTTTGTTTATCATGCACGAGCAGCGGAAACTAGATTGCCATGCTTGGAGCAAGGAGTAGGAAGAAGTGTTATGTGCGTTGAGCTGGTTGCTAATCGCTTCCTGCGGAAGATGGTACGTGTACTTGTTGCAACAGCAATTAGAGAAGCAGCTGCTGGTGCAGGAGAGGATGCGTTACTAGAGCTGATGGATGCCACATGTCG
Homology
[Close]
BLAST of CU117607 vs. TrEMBL
Match: A0A0A0LV59_CUCSA (tRNA pseudouridine synthase OS=Cucumis sativus GN=Csa_1G025830 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-21
Identity = 55/70 (78.57%), Postives = 55/70 (78.57%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIR         
Sbjct: 342 PTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGED 401

Query: 64  XXXXXMDATC 123
                MDATC
Sbjct: 402 ALLELMDATC 411

Query: 124  183
           
Sbjct: 462  411

Query: 184  214
           
Sbjct: 522  411

[Close]
BLAST of CU117607 vs. TrEMBL
Match: B9SDU2_RICCO (tRNA pseudouridine synthase OS=Ricinus communis GN=RCOM_1712560 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-16
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECF+YHARA E RLPC + G GR VMCVELVANRFLRKMVRVLVAT+IR         
Sbjct: 343 PTECFIYHARATEARLPCPDHGEGRKVMCVELVANRFLRKMVRVLVATSIREAAAGAEDD 402

Query: 64  XXXXXMDATC 123
                MDA+C
Sbjct: 403 ALLKLMDASC 412

Query: 124  183
           
Sbjct: 463  412

Query: 184  214
           
Sbjct: 523  412

[Close]
BLAST of CU117607 vs. TrEMBL
Match: A0A061GS38_THECC (tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_039779 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.8e-16
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECF+YHARAAE R+PC + G GR VMCVELVANRFLRKMVRVLVAT+IR         
Sbjct: 203 PTECFMYHARAAEARIPCSDHGEGREVMCVELVANRFLRKMVRVLVATSIREAAAGAEED 262

Query: 64  XXXXXMDATC 123
                M ATC
Sbjct: 263 ALLKLMGATC 272

Query: 124  183
           
Sbjct: 323  272

Query: 184  214
           
Sbjct: 383  272

[Close]
BLAST of CU117607 vs. TrEMBL
Match: A0A061GRT3_THECC (tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_039779 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.8e-16
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECF+YHARAAE R+PC + G GR VMCVELVANRFLRKMVRVLVAT+IR         
Sbjct: 344 PTECFMYHARAAEARIPCSDHGEGREVMCVELVANRFLRKMVRVLVATSIREAAAGAEED 403

Query: 64  XXXXXMDATC 123
                M ATC
Sbjct: 404 ALLKLMGATC 413

Query: 124  183
           
Sbjct: 464  413

Query: 184  214
           
Sbjct: 524  413

[Close]
BLAST of CU117607 vs. TrEMBL
Match: A0A0D2TLS5_GOSRA (tRNA pseudouridine synthase OS=Gossypium raimondii GN=B456_012G097600 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-15
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECF+YHARAAE R+PCL    GR VMCVELVANRFLRKMVRVLVAT+IR         
Sbjct: 350 PTECFMYHARAAEARIPCLVHEEGRKVMCVELVANRFLRKMVRVLVATSIREAAAGAEED 409

Query: 64  XXXXXMDATC 123
                M+ATC
Sbjct: 410 ALLKLMEATC 419

Query: 124  183
           
Sbjct: 470  419

Query: 184  214
           
Sbjct: 530  419

[Close]
BLAST of CU117607 vs. NCBI nr
Match: gi|449439176|ref|XP_004137363.1| (PREDICTED: uncharacterized protein LOC101205562 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 7.7e-21
Identity = 55/70 (78.57%), Postives = 55/70 (78.57%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIR         
Sbjct: 342 PTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGED 401

Query: 64  XXXXXMDATC 123
                MDATC
Sbjct: 402 ALLELMDATC 411

Query: 124  183
           
Sbjct: 462  411

Query: 184  214
           
Sbjct: 522  411

[Close]
BLAST of CU117607 vs. NCBI nr
Match: gi|659107096|ref|XP_008453520.1| (PREDICTED: uncharacterized protein LOC103494203 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 8.5e-20
Identity = 54/70 (77.14%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIR         
Sbjct: 342 PTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGED 401

Query: 64  XXXXXMDATC 123
                M ATC
Sbjct: 402 ALLELMVATC 411

Query: 124  183
           
Sbjct: 462  411

Query: 184  214
           
Sbjct: 522  411

[Close]
BLAST of CU117607 vs. NCBI nr
Match: gi|255566350|ref|XP_002524161.1| (PREDICTED: tRNA pseudouridine synthase A isoform X1 [Ricinus communis])

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-16
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECF+YHARA E RLPC + G GR VMCVELVANRFLRKMVRVLVAT+IR         
Sbjct: 343 PTECFIYHARATEARLPCPDHGEGRKVMCVELVANRFLRKMVRVLVATSIREAAAGAEDD 402

Query: 64  XXXXXMDATC 123
                MDA+C
Sbjct: 403 ALLKLMDASC 412

Query: 124  183
           
Sbjct: 463  412

Query: 184  214
           
Sbjct: 523  412

[Close]
BLAST of CU117607 vs. NCBI nr
Match: gi|1000955470|ref|XP_015577862.1| (PREDICTED: tRNA pseudouridine synthase A isoform X2 [Ricinus communis])

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-16
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECF+YHARA E RLPC + G GR VMCVELVANRFLRKMVRVLVAT+IR         
Sbjct: 314 PTECFIYHARATEARLPCPDHGEGRKVMCVELVANRFLRKMVRVLVATSIREAAAGAEDD 373

Query: 64  XXXXXMDATC 123
                MDA+C
Sbjct: 374 ALLKLMDASC 383

Query: 124  183
           
Sbjct: 434  383

Query: 184  214
           
Sbjct: 494  383

[Close]
BLAST of CU117607 vs. NCBI nr
Match: gi|1000955472|ref|XP_015577863.1| (PREDICTED: tRNA pseudouridine synthase A isoform X3 [Ricinus communis])

HSP 1 Score: 91.7 bits (226), Expect = 5.7e-16
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 4   PGECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIRXXXXXXXXX 63
           P ECF+YHARA E RLPC + G GR VMCVELVANRFLRKMVRVLVAT+IR         
Sbjct: 275 PTECFIYHARATEARLPCPDHGEGRKVMCVELVANRFLRKMVRVLVATSIREAAAGAEDD 334

Query: 64  XXXXXMDATC 123
                MDA+C
Sbjct: 335 ALLKLMDASC 344

Query: 124  183
           
Sbjct: 395  344

Query: 184  214
           
Sbjct: 455  344

The following BLAST results are available for this feature:
BLAST of CU117607 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV59_CUCSA5.4e-2178.57tRNA pseudouridine synthase OS=Cucumis sativus GN=Csa_1G025830 PE=3 SV=1[more]
B9SDU2_RICCO4.0e-1664.29tRNA pseudouridine synthase OS=Ricinus communis GN=RCOM_1712560 PE=3 SV=1[more]
A0A061GS38_THECC6.8e-1664.29tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_039779 PE=3 SV=1[more]
A0A061GRT3_THECC6.8e-1664.29tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_039779 PE=3 SV=1[more]
A0A0D2TLS5_GOSRA1.5e-1564.29tRNA pseudouridine synthase OS=Gossypium raimondii GN=B456_012G097600 PE=3 SV=1[more]
BLAST of CU117607 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439176|ref|XP_004137363.1|7.7e-2178.57PREDICTED: uncharacterized protein LOC101205562 [Cucumis sativus][more]
gi|659107096|ref|XP_008453520.1|8.5e-2077.14PREDICTED: uncharacterized protein LOC103494203 [Cucumis melo][more]
gi|255566350|ref|XP_002524161.1|5.7e-1664.29PREDICTED: tRNA pseudouridine synthase A isoform X1 [Ricinus communis][more]
gi|1000955470|ref|XP_015577862.1|5.7e-1664.29PREDICTED: tRNA pseudouridine synthase A isoform X2 [Ricinus communis][more]
gi|1000955472|ref|XP_015577863.1|5.7e-1664.29PREDICTED: tRNA pseudouridine synthase A isoform X3 [Ricinus communis][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G025830Csa1G025830gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02L976HFKNP3UI02L976HEST
G0154587G0154587EST