CsGy7G002720 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G002720
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr7 : 2188655 .. 2189513 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACTTTCTCACCCCATCACCTCCAAATTAAATTGATCATATCTCTAATCAATAGAGAGAGAATGAGTTCCAAGTCCTTCATCTTGCTCGGTCTTCTTTTTGCCGTCGTCCTCTTTTCCTCGGAGGCGATAACGGTTACAGCAAGGGATGCGAAATTGAGTGAGTTTCATTTTTTAAACCTGCAATGCGATGTATACTCGCTACTTTTAACTCCTTCAATTAGTGTTATGTACTATACCACAGCTTGGGCTTATGACAAATAATTTTTTTATTTAGTTGAGGTTTATGACAAACAAACCGCCAATGAAATTTTTAATTACAGCTTAAAATCAATGTAGGTTTTTGAATTAGTTGATGGACAATAAACATCAACAGAAACTATTTGTATTTGACGTTGATTTTTGCCGATAACAAAATTATTTTTGTTGATGTCAAAAGTTTTGTTGACACTGCTTCATTGATAATATTTTTAGTTATCAATAAAGGTCAAATTTGTGGTAGTATATAATGATTATATCAATGATTTACTTTGCAGAAGAAGCTACGATGGAAACTGGTGAAGTTGACAATGTGGAGCGCCACAGTTATGGAGGAGCTCATTCTCGGAACCTTGCGGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTTCGCGGCCGTTGCATCAGGTGCTGCAGCTTTGCTGGTGAGGCTGGTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAAGCACATGTTATTGTGTAACATTAAATAAAATGGCTTTATTTTCTGAAGTTGGTGTTTGTAAGTTATGAATAAATGCATATTAATTATTAATCGTATTACAATGAACAACGTATAATA

mRNA sequence

AATACTTTCTCACCCCATCACCTCCAAATTAAATTGATCATATCTCTAATCAATAGAGAGAGAATGAGTTCCAAGTCCTTCATCTTGCTCGGTCTTCTTTTTGCCGTCGTCCTCTTTTCCTCGGAGGCGATAACGGTTACAGCAAGGGATGCGAAATTGAAAGAAGCTACGATGGAAACTGGTGAAGTTGACAATGTGGAGCGCCACAGTTATGGAGGAGCTCATTCTCGGAACCTTGCGGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTTCGCGGCCGTTGCATCAGGTGCTGCAGCTTTGCTGGTGAGGCTGGTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAAGCACATGTTATTGTGTAACATTAAATAAAATGGCTTTATTTTCTGAAGTTGGTGTTTGTAAGTTATGAATAAATGCATATTAATTATTAATCGTATTACAATGAACAACGTATAATA

Coding sequence (CDS)

ATGAGTTCCAAGTCCTTCATCTTGCTCGGTCTTCTTTTTGCCGTCGTCCTCTTTTCCTCGGAGGCGATAACGGTTACAGCAAGGGATGCGAAATTGAAAGAAGCTACGATGGAAACTGGTGAAGTTGACAATGTGGAGCGCCACAGTTATGGAGGAGCTCATTCTCGGAACCTTGCGGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTTCGCGGCCGTTGCATCAGGTGCTGCAGCTTTGCTGGTGAGGCTGGTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAA

Protein sequence

MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN

Homology

[Close]

BLAST of CsGy7G002720 vs. NCBI nr
Match: XP_004144531.1 (PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_7G037560 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 4.8e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
           MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE
Sbjct: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 101
           CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN
Sbjct: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of CsGy7G002720 vs. TrEMBL
Match: tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
           MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE
Sbjct: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 101
           CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN
Sbjct: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of CsGy7G002720 vs. TrEMBL
Match: tr|M4FI35|M4FI35_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.1e-04
Identity = 37/92 (40.22%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
          M+SKSF+LLG LFA++   SE  T +A    L+  T+  G  + VE   YGG H      
Sbjct: 1  MASKSFVLLG-LFALIFVVSEVATASA----LQSGTVNLGSEETVEPDQYGGGHXXXXXX 60

Query: 61 CLHG-----CNRGCCECFRGR-CIRCCSFAGE 87
           +       C  GCC    G  C RCCS+AGE
Sbjct: 61 NIEXXXXXLCAHGCCSKRSGTVCYRCCSYAGE 87

[Close]

BLAST of CsGy7G002720 vs. TrEMBL
Match: tr|A0A078INC4|A0A078INC4_BRANA (BnaA09g54870D protein OS=Brassica napus OX=3708 GN=BnaA09g54870D PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.1e-04
Identity = 37/92 (40.22%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
          M+SKSF+LLG LFA++   SE  T +A    L+  T+  G  + VE   YGG H      
Sbjct: 1  MASKSFVLLG-LFALIFVVSEVATASA----LQSGTVNLGSEETVEPDQYGGGHXXXXXX 60

Query: 61 CLHG-----CNRGCCECFRGR-CIRCCSFAGE 87
           +       C  GCC    G  C RCCS+AGE
Sbjct: 61 NIEXXXXXLCAHGCCSKRSGTVCYRCCSYAGE 87

The following BLAST results are available for this feature:

BLAST of CsGy7G002720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144531.1	4.8e-49	100.00	PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical ...	[more]

BLAST of CsGy7G002720 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G002720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G002720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5A1\|A0A0A0K5A1_CUCSA	3.2e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1	[more]
tr\|M4FI35\|M4FI35_BRARP	9.1e-04	40.22	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
tr\|A0A078INC4\|A0A078INC4_BRANA	9.1e-04	40.22	BnaA09g54870D protein OS=Brassica napus OX=3708 GN=BnaA09g54870D PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G002720.1	CsGy7G002720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G002720	Cla015652	Watermelon (97103) v1	cgybwmB566
CsGy7G002720	Csa7G037560	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G002720	ClCG02G002470	Watermelon (Charleston Gray)	cgybwcgB506
CsGy7G002720	CSPI07G03040	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G002720	Lsi11G013820	Bottle gourd (USVL1VR-Ls)	cgyblsiB462
CsGy7G002720	CsaV3_7G002900	Cucumber (Chinese Long) v3	cgybcucB349
CsGy7G002720	Cla97C02G028930	Watermelon (97103) v2	cgybwmbB502
CsGy7G002720	Bhi05G001252	Wax gourd	cgybwgoB641

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G002720	Cucumber (Gy14) v2	cgybcgybB072
CsGy7G002720	Cucurbita maxima (Rimu)	cgybcmaB899
CsGy7G002720	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G002720	Cucurbita moschata (Rifu)	cgybcmoB877
CsGy7G002720	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G002720	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G002720	Cucurbita pepo (Zucchini)	cgybcpeB919
CsGy7G002720	Cucurbita pepo (Zucchini)	cgybcpeB964
CsGy7G002720	Cucumber (Chinese Long) v2	cgybcuB296
CsGy7G002720	Cucumber (Chinese Long) v2	cgybcuB328
CsGy7G002720	Bottle gourd (USVL1VR-Ls)	cgyblsiB455
CsGy7G002720	Melon (DHL92) v3.5.1	cgybmeB467
CsGy7G002720	Melon (DHL92) v3.5.1	cgybmeB468
CsGy7G002720	Melon (DHL92) v3.6.1	cgybmedB464
CsGy7G002720	Melon (DHL92) v3.6.1	cgybmedB465
CsGy7G002720	Watermelon (Charleston Gray)	cgybwcgB504
CsGy7G002720	Watermelon (97103) v1	cgybwmB565
CsGy7G002720	Wild cucumber (PI 183967)	cgybcpiB304
CsGy7G002720	Silver-seed gourd	carcgybB0217
CsGy7G002720	Silver-seed gourd	carcgybB1049
CsGy7G002720	Cucumber (Chinese Long) v3	cgybcucB316
CsGy7G002720	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G002720	Watermelon (97103) v2	cgybwmbB500
CsGy7G002720	Wax gourd	cgybwgoB640
CsGy7G002720	Wax gourd	cgybwgoB650