CsaV3_7G002900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G002900
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 2202912 .. 2203961 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAATTCTCATCCCATCTCCAAATACATTTTATATATCATTCTAAATCTACAAGAAAAAGAAAATGAATTCTAAGGCTTTCATCCTCCTCGGTCTCCTTTTCGCAGCTGTCATCCTAGAGGTAACCGCAGTTACGGCCACGAACGACATAAAATCTAGTGAGTCTAATCATTTATTAGATGATACATTGCAACACACTCTTTACTTATACTCATTTCATTAGTGTTATATGTGTGTGTTGATTCTCATGAGATATTCATTAACATTGTAGATGAAGCTTTTAAGCAAACAGATGAAATCAATGATGTCAAGCACCACGATTTGGGAGGAGAAGATGCTTCACTTGCCCAATGCCACCACCATTGCCACAAAGGTTGCTGCAAGTGTTCCCATGGTCATTGCGTCAAGTGCTGCCACTAATCTGCTGATGATCAGGCCCTGGTTGATGTACAATCTCAAGCCAAAAGTTTAACAACAAATCCTACTTTGTTGCTTTGTTTTTTGATTTCTCAAGTTCATATATTATATAATAATGTCTGCAGTCCAGTGTGTTTGCTTTTAAGTACTGAATAAATGCTTTGTTATGAAAAAAAAAAAGTAATGAATAAATGGAATGGCTTGAGATTGACTGTGTTTATTTAAAGATCTCATCGTATAAGTTAACCACTTACGACCATGACAAGTACAGCATGTTTGGGCAGTGATTTTAACAAAAAAAACTGATTTATTAATAAGTGATTTGGATGGCATATTTGGTTGTGCTCCCTACACTTTTGAAAGTGTATTTTGTAAAATCAAAACTAAAAATGATATATTTTGAATGGAGCATTATTTAGGGCAAGAAATAAGAACTACTAAAAATGAAATCGTATGCTTTTTAAAATGTAAGAAAAACAATACAGATCTAACAAAAATTGCCAAAGGCATAGGAAAAAATTAATAAACTTTGGGGGGAATGACAAGCTAACTTTAAAGATTAAAAAAAAATTAAGAGCGACGAATTGAGATTTTAAGAGTAAATAGTCAGATGAAGAGGTAAAAATTAGAGAGG

mRNA sequence

ATGAATTCTAAGGCTTTCATCCTCCTCGGTCTCCTTTTCGCAGCTGTCATCCTAGAGGTAACCGCAGTTACGGCCACGAACGACATAAAATCTAATGAAGCTTTTAAGCAAACAGATGAAATCAATGATGTCAAGCACCACGATTTGGGAGGAGAAGATGCTTCACTTGCCCAATGCCACCACCATTGCCACAAAGGTTGCTGCAAGTGTTCCCATGGTCATTGCGTCAAGTGCTGCCACTAA

Coding sequence (CDS)

ATGAATTCTAAGGCTTTCATCCTCCTCGGTCTCCTTTTCGCAGCTGTCATCCTAGAGGTAACCGCAGTTACGGCCACGAACGACATAAAATCTAATGAAGCTTTTAAGCAAACAGATGAAATCAATGATGTCAAGCACCACGATTTGGGAGGAGAAGATGCTTCACTTGCCCAATGCCACCACCATTGCCACAAAGGTTGCTGCAAGTGTTCCCATGGTCATTGCGTCAAGTGCTGCCACTAA

Protein sequence

MNSKAFILLGLLFAAVILEVTAVTATNDIKSNEAFKQTDEINDVKHHDLGGEDASLAQCHHHCHKGCCKCSHGHCVKCCH
Homology
[Close]
BLAST of CsaV3_7G002900 vs. NCBI nr
Match: XP_004144531.1 (PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_7G037560 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 1  MNSKAFILLGLLFAAVILEVTAVTAT-NDIKSNEAFKQTDEINDVKHHDLGG-EDASLAQ 60
          M+SK+FILLGLLFA V+    A+T T  D K  EA  +T E+++V+ H  GG    +LA+
Sbjct: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61 CHHHCHKGCCKCSHGHCVKCC 80
          C H C++GCC+C  G C++CC
Sbjct: 61 CLHGCNRGCCECFRGRCIRCC 81

[Close]
BLAST of CsaV3_7G002900 vs. TrEMBL
Match: tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.1e-11
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 1  MNSKAFILLGLLFAAVILEVTAVTAT-NDIKSNEAFKQTDEINDVKHHDLGG-EDASLAQ 60
          M+SK+FILLGLLFA V+    A+T T  D K  EA  +T E+++V+ H  GG    +LA+
Sbjct: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61 CHHHCHKGCCKCSHGHCVKCC 80
          C H C++GCC+C  G C++CC
Sbjct: 61 CLHGCNRGCCECFRGRCIRCC 81

The following BLAST results are available for this feature:
BLAST of CsaV3_7G002900 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144531.11.2e-1048.15PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical ... [more]
BLAST of CsaV3_7G002900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G002900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G002900 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA8.1e-1148.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010800GRP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G002900.1CsaV3_7G002900.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 1..60
e-value: 5.0E-7
score: 30.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G002900CSPI07G03040Wild cucumber (PI 183967)cpicucB419
CsaV3_7G002900CsGy7G002720Cucumber (Gy14) v2cgybcucB349
CsaV3_7G002900Cla015652Watermelon (97103) v1cucwmB634
CsaV3_7G002900ClCG02G002480Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G002900Lsi11G013820Bottle gourd (USVL1VR-Ls)cuclsiB529
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G002900Cucumber (Chinese Long) v3cuccucB099
CsaV3_7G002900Silver-seed gourdcarcucB0232
CsaV3_7G002900Silver-seed gourdcarcucB1114
CsaV3_7G002900Cucumber (Gy14) v2cgybcucB094
CsaV3_7G002900Cucumber (Gy14) v2cgybcucB348
CsaV3_7G002900Cucumber (Gy14) v1cgycucB292
CsaV3_7G002900Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G002900Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G002900Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G002900Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G002900Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G002900Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G002900Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G002900Wild cucumber (PI 183967)cpicucB116
CsaV3_7G002900Wild cucumber (PI 183967)cpicucB415
CsaV3_7G002900Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G002900Melon (DHL92) v3.5.1cucmeB547
CsaV3_7G002900Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G002900Melon (DHL92) v3.6.1cucmedB535
CsaV3_7G002900Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G002900Watermelon (Charleston Gray)cucwcgB570
CsaV3_7G002900Watermelon (97103) v1cucwmB633
CsaV3_7G002900Watermelon (97103) v2cucwmbB548
CsaV3_7G002900Watermelon (97103) v2cucwmbB549
CsaV3_7G002900Wax gourdcucwgoB694
CsaV3_7G002900Wax gourdcucwgoB695
CsaV3_7G002900Wax gourdcucwgoB703