ClCG02G002480 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G002480
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 2516313 .. 2517126 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAAATATCTTGATTCCAACCCTATACTCTGTGTGATATCCTTCTATAAATACATTTGAAATCCTGCAAAATTATTTCTCATCCAATCTCCAAATATATATTTTTTTTTCTAATCTACAAGAAAATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCATCGTCGTCGTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCAGTGAGTTTCATTTCCACACCTTTATATTAGATGATACATTGCAATTCTTTAATTTTACACTCATTTAATTACTGTTATACATACGTTGATTCTTTTGATAACATAGTGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAAAGTACATGTTGTTGCTTCAAATAAAGGGCTTTAATTTCTGTAGTTGATGCTTTGCTACAGTTTGAATGTTTTTAAGTTGATAAATGCATATGTTTTGAGATTAATTAGTATAAGTTAATCTCAGTACCATGACAAGTACATTTCTCCAATGGCTTTTGTGTCAATTGGTTATGTCATTAATCTATCAAAATCTCCTTACAAGTACTATTTTGTTTGTTTGATTGGAGCTACCCAGTTAAATCTATGTTGATTGAATAAAACAATGTTTTTGGAGTGATCAATGCAACAA

mRNA sequence

TTTAAATATCTTGATTCCAACCCTATACTCTGTGTGATATCCTTCTATAAATACATTTGAAATCCTGCAAAATTATTTCTCATCCAATCTCCAAATATATATTTTTTTTTCTAATCTACAAGAAAATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCATCGTCGTCGTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCATGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAAAGTACATGTTGTTGCTTCAAATAAAGGGCTTTAATTTCTGTAGTTGATGCTTTGCTACAGTTTGAATGTTTTTAAGTTGATAAATGCATATGTTTTGAGATTAATTAGTATAAGTTAATCTCAGTACCATGACAAGTACATTTCTCCAATGGCTTTTGTGTCAATTGGTTATGTCATTAATCTATCAAAATCTCCTTACAAGTACTATTTTGTTTGTTTGATTGGAGCTACCCAGTTAAATCTATGTTGATTGAATAAAACAATGTTTTTGGAGTGATCAATGCAACAA

Coding sequence (CDS)

ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCATCGTCGTCGTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCATGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAA

Protein sequence

MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAISVANNVCLNRCAHGCCSCVRGRCIRCCIDEEPQAMPSN
Homology
[Close]
BLAST of ClCG02G002480 vs. TrEMBL
Match: A0A0A0K5A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-20
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1 

Query: 1   MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           MSSK+FI LGLLF  VV+ SSE +T +TARD K +KEA MET EVD+V+RH +GG  + +
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAIT-VTARDAK-LKEATMETGEVDNVERHSYGGAHSRN 60

Query: 61  VANNVCLNRCAHGCCSCVRGRCIRCC--------IDEEPQAMPSN 98
           +A   CL+ C  GCC C RGRCIRCC        +D +PQA P+N
Sbjct: 61  LAE--CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]
BLAST of ClCG02G002480 vs. NCBI nr
Match: gi|449453573|ref|XP_004144531.1| (PREDICTED: glycine-rich protein-like [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-20
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1 

Query: 1   MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           MSSK+FI LGLLF  VV+ SSE +T +TARD K +KEA MET EVD+V+RH +GG  + +
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAIT-VTARDAK-LKEATMETGEVDNVERHSYGGAHSRN 60

Query: 61  VANNVCLNRCAHGCCSCVRGRCIRCC--------IDEEPQAMPSN 98
           +A   CL+ C  GCC C RGRCIRCC        +D +PQA P+N
Sbjct: 61  LAE--CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

The following BLAST results are available for this feature:
BLAST of ClCG02G002480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5A1_CUCSA2.1e-2055.24Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037560 PE=4 SV=1[more]
BLAST of ClCG02G002480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453573|ref|XP_004144531.1|3.1e-2055.24PREDICTED: glycine-rich protein-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G002480.1ClCG02G002480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G002480CsaV3_7G002900Cucumber (Chinese Long) v3cucwcgB571
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G002480Silver-seed gourdcarwcgB0194
ClCG02G002480Silver-seed gourdcarwcgB0336
ClCG02G002480Silver-seed gourdcarwcgB1037
ClCG02G002480Cucumber (Chinese Long) v3cucwcgB141
ClCG02G002480Cucumber (Chinese Long) v3cucwcgB219
ClCG02G002480Cucumber (Chinese Long) v3cucwcgB570
ClCG02G002480Watermelon (97103) v2wcgwmbB135
ClCG02G002480Watermelon (97103) v2wcgwmbB138
ClCG02G002480Watermelon (97103) v2wcgwmbB148
ClCG02G002480Watermelon (97103) v2wcgwmbB150
ClCG02G002480Wax gourdwcgwgoB266
ClCG02G002480Wax gourdwcgwgoB305
ClCG02G002480Watermelon (Charleston Gray)wcgwcgB047
ClCG02G002480Watermelon (Charleston Gray)wcgwcgB120
ClCG02G002480Cucumber (Gy14) v1cgywcgB322
ClCG02G002480Cucurbita maxima (Rimu)cmawcgB460
ClCG02G002480Cucurbita moschata (Rifu)cmowcgB094
ClCG02G002480Cucurbita moschata (Rifu)cmowcgB459
ClCG02G002480Wild cucumber (PI 183967)cpiwcgB134
ClCG02G002480Wild cucumber (PI 183967)cpiwcgB218
ClCG02G002480Wild cucumber (PI 183967)cpiwcgB574
ClCG02G002480Cucumber (Chinese Long) v2cuwcgB128
ClCG02G002480Cucumber (Chinese Long) v2cuwcgB546
ClCG02G002480Melon (DHL92) v3.5.1mewcgB092
ClCG02G002480Melon (DHL92) v3.5.1mewcgB195
ClCG02G002480Watermelon (97103) v1wcgwmB178
ClCG02G002480Watermelon (97103) v1wcgwmB198
ClCG02G002480Cucurbita pepo (Zucchini)cpewcgB233
ClCG02G002480Cucurbita pepo (Zucchini)cpewcgB267
ClCG02G002480Cucurbita pepo (Zucchini)cpewcgB596
ClCG02G002480Bottle gourd (USVL1VR-Ls)lsiwcgB058
ClCG02G002480Bottle gourd (USVL1VR-Ls)lsiwcgB095
ClCG02G002480Bottle gourd (USVL1VR-Ls)lsiwcgB097
ClCG02G002480Cucumber (Gy14) v2cgybwcgB123
ClCG02G002480Cucumber (Gy14) v2cgybwcgB198
ClCG02G002480Cucumber (Gy14) v2cgybwcgB504
ClCG02G002480Cucumber (Gy14) v2cgybwcgB506
ClCG02G002480Melon (DHL92) v3.6.1medwcgB094
ClCG02G002480Melon (DHL92) v3.6.1medwcgB190