ClCG02G002470 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G002470
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 2506671 .. 2507364 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTATTCTTCAAAACCTTATCTTCACAGGGAAAATTAGGACCAAGTATACCCCCACCTTGACACTGAATTCTACTCATCCTACTATAAATACAATTGAAATCCTACAAATCTAATTTCACCCCCATCAGCTCCAGATAGTTTATACTTCTCATCTACAAAGAAAATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCAGTGAGTTTCATTTCTTCACACTTTTATTGGCACAAAAATACATAAGTTTCGTCAAATATGTGAATTCCTAGTTTTTCAATAAGTTGACAGGCAATAAACATCGACAAAACTATTCGTTGATAATTTCTTTGGCTGTTAACAAATGTCTTTATTGACATTTTTTGGCCTTCAACAAAATCAAAATTTGTAGTGGTGTATGTTAATTATATTATTGATGAACCTTTCGTAGATGAAGCTATGATGGAAAATGGAGAAGTTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCGTCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA

mRNA sequence

GCTTATTCTTCAAAACCTTATCTTCACAGGGAAAATTAGGACCAAGTATACCCCCACCTTGACACTGAATTCTACTCATCCTACTATAAATACAATTGAAATCCTACAAATCTAATTTCACCCCCATCAGCTCCAGATAGTTTATACTTCTCATCTACAAAGAAAATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCATTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCGTCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA

Coding sequence (CDS)

ATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCATTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCGTCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA

Protein sequence

MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFIDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN

Homology

[Close]

BLAST of ClCG02G002470 vs. TrEMBL
Match: A0A0A0K5A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.2e-29
Identity = 69/101 (68.32%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKF---------IDDVERHVIGGGHARNLA 60
           MSS++FI LGLLFA VVLFSSE +TVTARD K          +D+VERH  GG H+RNLA
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60

Query: 61  ECLHGCARGCCGCVRGRCIRCCSSADEA--VDGEPQVKPNN 91
           ECLHGC RGCC C RGRCIRCCS A EA  VDG+PQ KPNN
Sbjct: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of ClCG02G002470 vs. NCBI nr
Match: gi|449453573|ref|XP_004144531.1| (PREDICTED: glycine-rich protein-like [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 7.4e-29
Identity = 69/101 (68.32%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKF---------IDDVERHVIGGGHARNLA 60
           MSS++FI LGLLFA VVLFSSE +TVTARD K          +D+VERH  GG H+RNLA
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60

Query: 61  ECLHGCARGCCGCVRGRCIRCCSSADEA--VDGEPQVKPNN 91
           ECLHGC RGCC C RGRCIRCCS A EA  VDG+PQ KPNN
Sbjct: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]

BLAST of ClCG02G002470 vs. NCBI nr
Match: gi|698533647|ref|XP_009763618.1| (PREDICTED: glycine-rich protein-like isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-06
Identity = 40/108 (37.04%), Postives = 51/108 (47.22%), Query Frame = 1


Query: 1   MSSRAFIFLGLLFAIVVLFSSE----EVTVTARDVKFIDDVERH--------------VI 60
           M S+AF+FLGL  AI  L SSE    E+  T+  +K  ++ E H                
Sbjct: 1   MGSKAFLFLGLCLAIFFLISSEVVAAELAETSNSMKSDNENEVHFDGRSGYNGIGNDGYY 60

Query: 61  GGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN 91
           GGGH         GC  GCC      C RCCS A EA+D   +V+P+N
Sbjct: 61  GGGHGGGYKR--RGCRYGCCRKGYNGCKRCCSYAGEAMDKVTEVQPHN 106

The following BLAST results are available for this feature:

BLAST of ClCG02G002470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5A1_CUCSA	5.2e-29	68.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037560 PE=4 SV=1	[more]

BLAST of ClCG02G002470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453573\|ref\|XP_004144531.1\|	7.4e-29	68.32	PREDICTED: glycine-rich protein-like [Cucumis sativus]	[more]
gi\|698533647\|ref\|XP_009763618.1\|	3.0e-06	37.04	PREDICTED: glycine-rich protein-like isoform X2 [Nicotiana sylvestris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G002470.1	ClCG02G002470.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G002470	Csa7G037560	Cucumber (Chinese Long) v2	cuwcgB546
ClCG02G002470	Cla015652	Watermelon (97103) v1	wcgwmB198
ClCG02G002470	Cla97C02G028930	Watermelon (97103) v2	wcgwmbB138
ClCG02G002470	Bhi05G001252	Wax gourd	wcgwgoB266
ClCG02G002470	CSPI07G03040	Wild cucumber (PI 183967)	cpiwcgB574
ClCG02G002470	Lsi11G013820	Bottle gourd (USVL1VR-Ls)	lsiwcgB097
ClCG02G002470	CsGy7G002720	Cucumber (Gy14) v2	cgybwcgB506
ClCG02G002470	Carg18056	Silver-seed gourd	carwcgB1037
ClCG02G002470	CsaV3_7G002940	Cucumber (Chinese Long) v3	cucwcgB571

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G002470	Cucumber (Chinese Long) v3	cucwcgB141
ClCG02G002470	Cucumber (Chinese Long) v3	cucwcgB219
ClCG02G002470	Cucumber (Chinese Long) v3	cucwcgB570
ClCG02G002470	Watermelon (97103) v2	wcgwmbB135
ClCG02G002470	Watermelon (97103) v2	wcgwmbB148
ClCG02G002470	Watermelon (97103) v2	wcgwmbB150
ClCG02G002470	Wax gourd	wcgwgoB305
ClCG02G002470	Watermelon (Charleston Gray)	wcgwcgB047
ClCG02G002470	Watermelon (Charleston Gray)	wcgwcgB120
ClCG02G002470	Cucumber (Gy14) v1	cgywcgB322
ClCG02G002470	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G002470	Cucurbita moschata (Rifu)	cmowcgB094
ClCG02G002470	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G002470	Wild cucumber (PI 183967)	cpiwcgB134
ClCG02G002470	Wild cucumber (PI 183967)	cpiwcgB218
ClCG02G002470	Cucumber (Chinese Long) v2	cuwcgB128
ClCG02G002470	Melon (DHL92) v3.5.1	mewcgB092
ClCG02G002470	Melon (DHL92) v3.5.1	mewcgB195
ClCG02G002470	Watermelon (97103) v1	wcgwmB178
ClCG02G002470	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G002470	Cucurbita pepo (Zucchini)	cpewcgB267
ClCG02G002470	Cucurbita pepo (Zucchini)	cpewcgB596
ClCG02G002470	Bottle gourd (USVL1VR-Ls)	lsiwcgB058
ClCG02G002470	Bottle gourd (USVL1VR-Ls)	lsiwcgB095
ClCG02G002470	Cucumber (Gy14) v2	cgybwcgB123
ClCG02G002470	Cucumber (Gy14) v2	cgybwcgB198
ClCG02G002470	Cucumber (Gy14) v2	cgybwcgB504
ClCG02G002470	Melon (DHL92) v3.6.1	medwcgB094
ClCG02G002470	Melon (DHL92) v3.6.1	medwcgB190
ClCG02G002470	Silver-seed gourd	carwcgB0194
ClCG02G002470	Silver-seed gourd	carwcgB0336