CsaV3_7G002940 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G002940
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionBnaA09g54870D protein
Locationchr7 : 2229308 .. 2230381 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCCATCACCTCCAAATTAAATTGATCATATCTCTAATCAATAGAGAGAGAATGAGTTCCAAGTCCTTCATCTTGCTCGGTCTTCTTTTTGCCGTCGTCCTCTTTTCCTCGGAGGCGATAACTGTTACAGCAAGGGATGCGAAATTGAGTGAGTTTCATTTTTTAAACCTGCAATGCGATGTATACTCGCTACTTTTAATTCCTTCAATTAGTGTTATGTACTATACCACAGCTTGGGCTTATGACAAATAATTTTTTTATTTAGTTGAGGTTTATGACAAACAAACCGCCAATGAAATTTTTAATTACAGCTTAAAATCAATGTAGGTTTTTTAATTAGTTGATGGACAATAAACATCAACAGAAACTATTTGTATTTGACGTTGATTTTTGCCGATAACAAAATTATTTTTGTTGATGTCAAAAGTTTTGTTGACACTGCTTCATTGATAATATTTTTAGTTATCAATAAAGGTCAAATTTGTGGTAGTATATAATGATTATATCAATGATTTACTTTGCAGAAGAAGCTACGATGGAAACTGGTGAAGTTGACAATGTGGAGCGCCACAGTTATGGAGGAGCTCATTCTCGGAACCTTGCGGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTTCGCGGCCGTTGCATCAGGTGCTGCAGCTTTGCTGGTGAGGCTGGTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAAGCACATGTTATTGTGTAACATTAAATAAAATGGCTTTATTTTCTGAAGTTGGTGTTTGTAAGTTATGAATAAATGCATATATGCTCGTGAGATTAATTATTATATATGTTAATCGTATTACAATGAACAACGTATAATATGGTTCTGATCAAAGAAATGTGGCTGCTTTATTATTAATTATTTATATAAACTATCCAATGCCGTGTCTAATTAATTAATTATTACGTTTCACTTATATAATAAATTTGGGGAATTTGAAGTCTCTATTGAGATAAATTTAAACAATCACATAAAGCAGTTCTCTCCCTGACCCAATTACAAAAGAATAATCTCTCAAAACTTT

mRNA sequence

ATGAGTTCCAAGTCCTTCATCTTGCTCGGTCTTCTTTTTGCCGTCGTCCTCTTTTCCTCGGAGGCGATAACTGTTACAGCAAGGGATGCGAAATTGAAAGAAGCTACGATGGAAACTGGTGAAGTTGACAATGTGGAGCGCCACAGTTATGGAGGAGCTCATTCTCGGAACCTTGCGGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTTCGCGGCCGTTGCATCAGGTGCTGCAGCTTTGCTGGTGAGGCTGGTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAA

Coding sequence (CDS)

ATGAGTTCCAAGTCCTTCATCTTGCTCGGTCTTCTTTTTGCCGTCGTCCTCTTTTCCTCGGAGGCGATAACTGTTACAGCAAGGGATGCGAAATTGAAAGAAGCTACGATGGAAACTGGTGAAGTTGACAATGTGGAGCGCCACAGTTATGGAGGAGCTCATTCTCGGAACCTTGCGGAATGCCTCCACGGTTGCAACCGAGGTTGTTGCGAATGCTTTCGCGGCCGTTGCATCAGGTGCTGCAGCTTTGCTGGTGAGGCTGGTATTGTTGATGGAAAGCCTCAAGCTAAGCCTAACAATTAA

Protein sequence

MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN
Homology
[Close]
BLAST of CsaV3_7G002940 vs. NCBI nr
Match: XP_004144531.1 (PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_7G037560 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 2.8e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
           MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE
Sbjct: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 101
           CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN
Sbjct: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]
BLAST of CsaV3_7G002940 vs. TrEMBL
Match: tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
           MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE
Sbjct: 1   MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60

Query: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 101
           CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN
Sbjct: 61  CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]
BLAST of CsaV3_7G002940 vs. TrEMBL
Match: tr|M4FI35|M4FI35_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.2e-04
Identity = 37/92 (40.22%), Postives = 47/92 (51.09%), Query Frame = 0 

Query: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
          M+SKSF+LLG LFA++   SE  T +A    L+  T+  G  + VE   YGG H      
Sbjct: 1  MASKSFVLLG-LFALIFVVSEVATASA----LQSGTVNLGSEETVEPDQYGGGHXXXXXX 60

Query: 61 CLHG-----CNRGCCECFRGR-CIRCCSFAGE 87
           +       C  GCC    G  C RCCS+AGE
Sbjct: 61 NIEXXXXXLCAHGCCSKRSGTVCYRCCSYAGE 87

[Close]
BLAST of CsaV3_7G002940 vs. TrEMBL
Match: tr|A0A078INC4|A0A078INC4_BRANA (BnaA09g54870D protein OS=Brassica napus OX=3708 GN=BnaA09g54870D PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.2e-04
Identity = 37/92 (40.22%), Postives = 47/92 (51.09%), Query Frame = 0 

Query: 1  MSSKSFILLGLLFAVVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLAE 60
          M+SKSF+LLG LFA++   SE  T +A    L+  T+  G  + VE   YGG H      
Sbjct: 1  MASKSFVLLG-LFALIFVVSEVATASA----LQSGTVNLGSEETVEPDQYGGGHXXXXXX 60

Query: 61 CLHG-----CNRGCCECFRGR-CIRCCSFAGE 87
           +       C  GCC    G  C RCCS+AGE
Sbjct: 61 NIEXXXXXLCAHGCCSKRSGTVCYRCCSYAGE 87

The following BLAST results are available for this feature:
BLAST of CsaV3_7G002940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144531.12.8e-49100.00PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical ... [more]
BLAST of CsaV3_7G002940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G002940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G002940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA1.9e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1[more]
tr|M4FI35|M4FI35_BRARP9.2e-0440.22Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1[more]
tr|A0A078INC4|A0A078INC4_BRANA9.2e-0440.22BnaA09g54870D protein OS=Brassica napus OX=3708 GN=BnaA09g54870D PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G002940.1CsaV3_7G002940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G002940CmaCh11G012670Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G002940CmoCh11G018550Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G002940Cp4.1LG04g03820Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G002940ClCG02G002470Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G002940Cla97C02G028930Watermelon (97103) v2cucwmbB549
CsaV3_7G002940Bhi05G001252Wax gourdcucwgoB695
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G002940Cucumber (Chinese Long) v3cuccucB099
CsaV3_7G002940Silver-seed gourdcarcucB0232
CsaV3_7G002940Silver-seed gourdcarcucB1114
CsaV3_7G002940Cucumber (Gy14) v2cgybcucB094
CsaV3_7G002940Cucumber (Gy14) v2cgybcucB348
CsaV3_7G002940Cucumber (Gy14) v2cgybcucB349
CsaV3_7G002940Cucumber (Gy14) v1cgycucB292
CsaV3_7G002940Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G002940Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G002940Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G002940Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G002940Wild cucumber (PI 183967)cpicucB116
CsaV3_7G002940Wild cucumber (PI 183967)cpicucB415
CsaV3_7G002940Wild cucumber (PI 183967)cpicucB419
CsaV3_7G002940Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G002940Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G002940Melon (DHL92) v3.5.1cucmeB547
CsaV3_7G002940Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G002940Melon (DHL92) v3.6.1cucmedB535
CsaV3_7G002940Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G002940Watermelon (Charleston Gray)cucwcgB570
CsaV3_7G002940Watermelon (97103) v1cucwmB633
CsaV3_7G002940Watermelon (97103) v1cucwmB634
CsaV3_7G002940Watermelon (97103) v2cucwmbB548
CsaV3_7G002940Wax gourdcucwgoB694
CsaV3_7G002940Wax gourdcucwgoB703