Cla97C02G028930 (gene) Watermelon (97103) v2

Overview
NameCla97C02G028930
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionGlycine-rich protein
LocationCla97Chr02 : 2327638 .. 2328166 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCAGTGAGTTTCATTTCTTCACACTTTTATTGGCACAAAAATACATAAGTTTCGTCAAATATGTGAATTCCTAGTTTTTCAATAAGTTGACAGGCAATAAACATCGACAAAACTATTCGTTGATAATTTCTTTGGCTGTTAACAAATGTCTTTATTGACATTTTTTGGCCTTCAACAAAATCAAAATTTGTAGTGGTGTATGTTAATTATATTATTGATGAACCTTTCGTAGATGAAGCTATGATGGAAAATGGAGAAGTTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCGTCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA

mRNA sequence

ATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCAATGAAGCTATGATGGAAAATGGAGAAGTTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCGTCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA

Coding sequence (CDS)

ATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCAATGAAGCTATGATGGAAAATGGAGAAGTTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCGTCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA

Protein sequence

MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN
Homology
[Close]
BLAST of Cla97C02G028930 vs. NCBI nr
Match: XP_004144531.1 (PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_7G037560 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-30
Identity = 74/101 (73.27%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLA 60
           MSS++FI LGLLFA VVLFSSE +TVTARD K  EA ME GEVD+VERH  GG H+RNLA
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60

Query: 61  ECLHGCARGCCGXXXGRCIRCCSSADEA--VDGEPQVKPNN 100
           ECLHGC RGCC    GRCIRCCS A EA  VDG+PQ KPNN
Sbjct: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]
BLAST of Cla97C02G028930 vs. NCBI nr
Match: XP_016510343.1 (PREDICTED: glycine-rich protein-like [Nicotiana tabacum])

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 0 

Query: 1   MSSRAFIFLGLLFAIVVLFSSE----EVTVTARDVKFNEAMMENGEVDDVERHVIGGGHA 60
           M S+AF+FLGL  AI  L SSE    E+  T++ +K +    ENG   D      GGG+ 
Sbjct: 1   MGSKAFLFLGLCLAIFFLISSEVVAAELAETSKSMKLDN---ENGVSIDGRSGYYGGGYK 60

Query: 61  RNLAECLHGCARGCCGXXXGRCIRCCSSADEAVDGEPQVKPNN 100
           R       GC  GCC      C RCCS A EA+D   + +P+N
Sbjct: 61  R------RGCRYGCCRKGYKGCKRCCSYAGEAMDKVTEAQPHN 94

[Close]
BLAST of Cla97C02G028930 vs. NCBI nr
Match: XP_022989495.1 (glycine-rich protein DC7.1-like [Cucurbita maxima])

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-04
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0 

Query: 1  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME-NGEVDDVERHVIGGGH 56
          M+S+AFI LGLLFA+V+L SSEE T TAR +K   EA+ME NG+  + ++   GGGH
Sbjct: 1  MNSKAFIILGLLFAVVILLSSEEATATARGLKSVEEAVMETNGDGIEDDKRRFGGGH 57

[Close]
BLAST of Cla97C02G028930 vs. TrEMBL
Match: tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-30
Identity = 74/101 (73.27%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 1   MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLA 60
           MSS++FI LGLLFA VVLFSSE +TVTARD K  EA ME GEVD+VERH  GG H+RNLA
Sbjct: 1   MSSKSFILLGLLFA-VVLFSSEAITVTARDAKLKEATMETGEVDNVERHSYGGAHSRNLA 60

Query: 61  ECLHGCARGCCGXXXGRCIRCCSSADEA--VDGEPQVKPNN 100
           ECLHGC RGCC    GRCIRCCS A EA  VDG+PQ KPNN
Sbjct: 61  ECLHGCNRGCCECFRGRCIRCCSFAGEAGIVDGKPQAKPNN 100

[Close]
BLAST of Cla97C02G028930 vs. TrEMBL
Match: tr|A0A1S4DAE5|A0A1S4DAE5_TOBAC (glycine-rich protein-like OS=Nicotiana tabacum OX=4097 GN=LOC107827673 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-05
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 0 

Query: 1   MSSRAFIFLGLLFAIVVLFSSE----EVTVTARDVKFNEAMMENGEVDDVERHVIGGGHA 60
           M S+AF+FLGL  AI  L SSE    E+  T++ +K +    ENG   D      GGG+ 
Sbjct: 1   MGSKAFLFLGLCLAIFFLISSEVVAAELAETSKSMKLDN---ENGVSIDGRSGYYGGGYK 60

Query: 61  RNLAECLHGCARGCCGXXXGRCIRCCSSADEAVDGEPQVKPNN 100
           R       GC  GCC      C RCCS A EA+D   + +P+N
Sbjct: 61  R------RGCRYGCCRKGYKGCKRCCSYAGEAMDKVTEAQPHN 94

The following BLAST results are available for this feature:
BLAST of Cla97C02G028930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144531.12.9e-3073.27PREDICTED: glycine-rich protein-like [Cucumis sativus] >KGN43452.1 hypothetical ... [more]
XP_016510343.12.5e-0539.81PREDICTED: glycine-rich protein-like [Nicotiana tabacum][more]
XP_022989495.13.6e-0456.14glycine-rich protein DC7.1-like [Cucurbita maxima][more]
BLAST of Cla97C02G028930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K5A1|A0A0A0K5A1_CUCSA1.9e-3073.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1[more]
tr|A0A1S4DAE5|A0A1S4DAE5_TOBAC1.6e-0539.81glycine-rich protein-like OS=Nicotiana tabacum OX=4097 GN=LOC107827673 PE=4 SV=1[more]
BLAST of Cla97C02G028930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G028930 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G028930.1Cla97C02G028930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G028930Cla015652Watermelon (97103) v1wmwmbB317
Cla97C02G028930Csa7G037560Cucumber (Chinese Long) v2cuwmbB529
Cla97C02G028930ClCG02G002470Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G028930CSPI07G03040Wild cucumber (PI 183967)cpiwmbB553
Cla97C02G028930Lsi11G013820Bottle gourd (USVL1VR-Ls)lsiwmbB086
Cla97C02G028930CsGy7G002720Cucumber (Gy14) v2cgybwmbB502
Cla97C02G028930CsaV3_7G002940Cucumber (Chinese Long) v3cucwmbB549
Cla97C02G028930Bhi05G001252Wax gourdwgowmbB241
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G028930Melon (DHL92) v3.5.1mewmbB094
Cla97C02G028930Melon (DHL92) v3.5.1mewmbB178
Cla97C02G028930Watermelon (Charleston Gray)wcgwmbB150
Cla97C02G028930Wax gourdwgowmbB376
Cla97C02G028930Watermelon (97103) v2wmbwmbB091
Cla97C02G028930Silver-seed gourdcarwmbB0202
Cla97C02G028930Silver-seed gourdcarwmbB1124
Cla97C02G028930Cucumber (Gy14) v2cgybwmbB118
Cla97C02G028930Cucumber (Gy14) v2cgybwmbB500
Cla97C02G028930Cucumber (Gy14) v1cgywmbB326
Cla97C02G028930Cucurbita maxima (Rimu)cmawmbB101
Cla97C02G028930Cucurbita maxima (Rimu)cmawmbB531
Cla97C02G028930Cucurbita moschata (Rifu)cmowmbB094
Cla97C02G028930Cucurbita moschata (Rifu)cmowmbB512
Cla97C02G028930Wild cucumber (PI 183967)cpiwmbB126
Cla97C02G028930Wild cucumber (PI 183967)cpiwmbB552
Cla97C02G028930Cucumber (Chinese Long) v3cucwmbB127
Cla97C02G028930Cucumber (Chinese Long) v3cucwmbB548
Cla97C02G028930Cucumber (Chinese Long) v2cuwmbB124
Cla97C02G028930Cucumber (Chinese Long) v2cuwmbB527
Cla97C02G028930Bottle gourd (USVL1VR-Ls)lsiwmbB055
Cla97C02G028930Melon (DHL92) v3.6.1medwmbB090
Cla97C02G028930Melon (DHL92) v3.6.1medwmbB164