CsGy7G001950 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G001950
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pectin lyase-like superfamily protein
Location	Chr7 : 1644994 .. 1648810 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACTTCCATTTTGCATGATTCAACAAGCATGACATTCATGACGCTCAACCCACACGATCTCTCACCATTTTTTCTTACAACTAATGCTCTCTCAACCTCCGCCCTTCTCCGGTCCGGCGGCCCGTCGAGATTCTGTTCAACGGGCAGTGGCTCTAGGTGTATTTCTCTTTTTCATGTGTGCGACGGTTAACAATCAGAGACTTAGTGGGGGGAAAAGAAGTTAACGACGGTTAACTTTGGCGAATTCGAAATCCCCCTCTCCCATTTTATCAGCATCTCCGGTTGGAAATTTAAAACTCAAATACCGTTCCATTCATGAACCGGTAAGCTAAAAAAATCTCTTCCGATTTCAGTTTCTCTGAGCAGAAGCAAAGCTCTTGTTAAGCTATTAGCATGAATTTCACCTTTTACACTACACTTTTTTTGGTGCTCTCGTCTTCCTGTTCTAGCTCAGTTATTAGTAGAGGAATATTGGAATCAGACGTTTCAGGAAGCTTATTGCGTTACAGAACTAAGAGTTCTTCTCATGTTTTCAGTGTTAGAAGCTTTGGTGCCCGAGCAAATGGCTTGACTGATGATAGCAACGTCTGTTCTGCGTTTGTTTTTTGTTGCTTTTTTTTCTTTTTTTGTGGAAATTGTTTGAGATTTTACTTGATGAATTGTATTCCTTGAGCTCTGTTGCTCCCTTCAACTGTTGAGATTCTCTTCTCTGCTGCAATTTCCTGTACTTTTTATCCGTTTTTTGTTCCATTTCTTCAGCTCTCTAGAAACGACAACTTTGTTATTATATGCATTGTTCCTAAGGATTTCCATGAATCTCTCTTGTTGTGTTTTCTACTTGTCTACTCAAATTTAGAATCGTTCAATCAGATGTTTTCTGTTCTTAGTCCAATTTCTTGCTTGGTGGAAATGAAAATCCAGTTTCCTTCCAAATGGCGAGGATACATGATTAGGAATAGTAAAAAGTGTTTATTGACAAATTACATTGTGTTTGATTCTACATTCTTGAAGGGGTTTTAGGTGGTTCTCTAACAATCACAAGGTTTAATAGTACTATATGTGTGTGTGTGTGTGCTTTCTCATAAAACAATCAGTCTTTTTTTTTTTCAAATTGACAATATATTGTTTTCAAACGTGATGTTTCTGAGTAGGAAGTGGTTTTGCTTCAAAAAGATTAAGATCAGTTTTCAAAAGTTTTGATTTGCTTGTGATTCAGGCCTTCTTAGCAGCATGGAGGATGGCCTGTGACTCAGCTGGAGTTGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTATATTTTCTGGCCCTTGCAAAAACGTGTCATCTCTAACAGTTAAAATGGAGGCAAGGGTCTAGTCGTCTTCTTCTTTAGGCTTTCTTCGTCAAATTTGTTTGGTTTGAGACATTGCGCTCGAATGCAGGGCTATTTGAAGGCATCAACAAACCTTTCGAAATATGGTTCTGGTGCAGGCTGGATTGAGTTCAGATGGATGGAGGGGCTAACCTTGAATGGAGGTGGAACCTTTGATGGTCGAGGCGCTGAGGCATGGCCATTCAACAACTGCCGCGATGACTACAATTGCAAACTCCTTCCTACTGTAAATTCCATACCACATTTTGTTCTGTTTGAATTTTAATAAATTTCATGTCTTGAAAAACTAGAAATCGCAAGGATTGTTCTATTGCTGTCACTTGAAAACTGGTGAAATTATTTCAACGAACCATTTCGATCTCATGCCTTGAAACTTTAGGAATTGCAAGAAATGTTCCACTACAAACATATATTAGTAAGTTTAATAATGCATATCATTTCAAACTCATGTCTTGAAAGTTAAAACATTAGGACTTGGAAGAAACGTTATATTGCTGCCATTCGAAACATCAGTAAGATTCTTACAATATACCGTTTCAAACTCATGTCTTGAAGCATTGGTATTTCAAAAAATGTTTTATTCCTGCCGTTTGAAACATCAATTTAAATCTTAAAATGAGCGATTACAATTTGAAATATTATGAATTGCCATTCGAAAAATCAGTAAGATTCTTACAATGTCTTGGTTCTTTTTCAGAACTTGAAATTTGTGGCTTTGAATAATACGGTTGTTCAACACATAACTTCGCTGAACAGCAAGTTCTTTCACCTGGCTTTAGTTCAATGCAAGAGGTTCGTAGGTAGCGAACTCAAGATTTCTGCTCCAGAAAATAGTCCCAACACCGATGGCATCCACATTGACCGAAGTTCTAATATCCATTTTTCTTTATCACATATTCAAACGGGTGACGACTGCATATCCATCGGACAAGGGAACTCTCAAGTCACAATCTCTAGCGTCAACTGTGGACCTGGCCATGGGATCAGGTACATAGATTGCTACCAAAAGGTTTTATGCTTCTGTCATCTTTTATCCTATATTCAGCTACTAGAAGTAGTTTTTAGGATAACTGACTTTTGTTCACTGTAGTGTTGGAAGCTTGGGAAGATATCGAAATGAAGGAGACGTAAGCGGATTAGTAGTTAAAAATTGCAGCCTCACAGGTACCGCCAATGGGATCAGAATCAAGACATGGCCAAACTCTCCTGGTAGCAGCTCAGCCACAAACATGACATTTGAGAACATTACCATGAACAATGTGTCCAATCCAATTATCATTGATCAATCATACTGTCCATTCGGATTTTGTTCTTTCAAGGTAAGCCAGTGCTCTCTCAACTCAATCTTTTTACAAAAAGGGACCGTAAACACGTGAGCAAACTATAGTATTTTCAGATATAAATTTCATTGTAGTCTTTGGACTTTCAAGTCCATTTTGTCGTAGCTTTTTCTAGTTCTTGAACTTTCAAAAGATTAACCGATACTAGCTTAGAGAGACCCAACTAGTTATCATCAAAACTTACGTACTAAAAATGGATATTTTGAAAGCTTAGATACCAAAAGGAAATATCGTATCTATAAATACTTTTTAGACGTTTAGTTCAAAAAATATCCTTTCTTAAACAAATTTCAAAACTATGGCAAAAAGTTATTGAATGGCAAATGCATTTCGGAGATGAGAAGCTGATTTATTTGGACAGGAACCATCTCTTGTGAAGCTGAGTGATATTTATTTCAAGAACATTAGAGGAACATCTTCCTCTAAAGTGGCTGTGGCATTAGAATGCAGCAAGGGATTCCCATGTCAGAATGTGAACCTTGAAAATGTTCACTTGGATCTTTCATCAGGAGAAAATCATCCATCTTCTACTTGCAAATATGTTAGAGCCAGGTATATTGGCACCCAAATCCCACCCCCTTGTGCTTAGATTTACAAATCATATGTTTCTAGTTTTCTCTTATGTTTTTAAACATTTATAGGATGTGGAATTAGAGATTATTCTATCTGGTTAATTATTATACTATCTTTGATATAATTTCTATGTTGTGTTATTTTTGAGGATTCGATTAGGGTATCACCTAATAAGAACTCCCAAAGGCACGAAAAACAGACAAGAACATTTAAAGATAGATTTAAATTTCAATATCAATGAAGAAACTACAATATAACATAGCCTTTGGAGAGGGCTATACTCTTTTCCACTGTTTCCCACAGGAACTCGCTACCAAAATCTTCACTACTTCCTCTCAGTTCACTCCCACTATTTAAAACTAAAAGCCCCAACAAGTTACTGTCTAATTACTAATATGCTCCTCCTACCTACCATCTCCATAACTATCGGTTGTACATATTCCACACACACACACTGTATAGGAATACTTTAAACTGTTTCTAAGATGAATGTATGAAAGTATTATTTGAAAAAT

mRNA sequence

GAAAAACTTCCATTTTGCATGATTCAACAAGCATGACATTCATGACGCTCAACCCACACGATCTCTCACCATTTTTTCTTACAACTAATGCTCTCTCAACCTCCGCCCTTCTCCGGTCCGGCGGCCCGTCGAGATTCTGTTCAACGGGCAGTGGCTCTAGGTGTATTTCTCTTTTTCATGTGTGCGACGGTTAACAATCAGAGACTTAGTGGGGGGAAAAGAAGTTAACGACGGTTAACTTTGGCGAATTCGAAATCCCCCTCTCCCATTTTATCAGCATCTCCGGTTGGAAATTTAAAACTCAAATACCGTTCCATTCATGAACCGGTAAGCTAAAAAAATCTCTTCCGATTTCAGTTTCTCTGAGCAGAAGCAAAGCTCTTGTTAAGCTATTAGCATGAATTTCACCTTTTACACTACACTTTTTTTGGTGCTCTCGTCTTCCTGTTCTAGCTCAGTTATTAGTAGAGGAATATTGGAATCAGACGTTTCAGGAAGCTTATTGCGTTACAGAACTAAGAGTTCTTCTCATGTTTTCAGTGTTAGAAGCTTTGGTGCCCGAGCAAATGGCTTGACTGATGATAGCAACGCCTTCTTAGCAGCATGGAGGATGGCCTGTGACTCAGCTGGAGTTGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTATATTTTCTGGCCCTTGCAAAAACGTGTCATCTCTAACAGTTAAAATGGAGGCAAGGGTCTAGTCGTCTTCTTCTTTAGGCTTTCTTCGTCAAATTTGTTTGGTTTGAGACATTGCGCTCGAATGCAGGGCTATTTGAAGGCATCAACAAACCTTTCGAAATATGGTTCTGGTGCAGGCTGGATTGAGTTCAGATGGATGGAGGGGCTAACCTTGAATGGAGGTGGAACCTTTGATGGTCGAGGCGCTGAGGCATGGCCATTCAACAACTGCCGCGATGACTACAATTGCAAACTCCTTCCTACTAACTTGAAATTTGTGGCTTTGAATAATACGGTTGTTCAACACATAACTTCGCTGAACAGCAAGTTCTTTCACCTGGCTTTAGTTCAATGCAAGAGGTTCGTAGGTAGCGAACTCAAGATTTCTGCTCCAGAAAATAGTCCCAACACCGATGGCATCCACATTGACCGAAGTTCTAATATCCATTTTTCTTTATCACATATTCAAACGGGTGACGACTGCATATCCATCGGACAAGGGAACTCTCAAGTCACAATCTCTAGCGTCAACTGTGGACCTGGCCATGGGATCAGTGTTGGAAGCTTGGGAAGATATCGAAATGAAGGAGACGTAAGCGGATTAGTAGTTAAAAATTGCAGCCTCACAGGTACCGCCAATGGGATCAGAATCAAGACATGGCCAAACTCTCCTGGTAGCAGCTCAGCCACAAACATGACATTTGAGAACATTACCATGAACAATGTGTCCAATCCAATTATCATTGATCAATCATACTGTCCATTCGGATTTTGTTCTTTCAAGGAACCATCTCTTGTGAAGCTGAGTGATATTTATTTCAAGAACATTAGAGGAACATCTTCCTCTAAAGTGGCTGTGGCATTAGAATGCAGCAAGGGATTCCCATGTCAGAATGTGAACCTTGAAAATGTTCACTTGGATCTTTCATCAGGAGAAAATCATCCATCTTCTACTTGCAAATATGTTAGAGCCAGGTATATTGGCACCCAAATCCCACCCCCTTGTGCTTAGATTTACAAATCATATGTTTCTAGTTTTCTCTTATGTTTTTAAACATTTATAGGATGTGGAATTAGAGATTATTCTATCTGGTTAATTATTATACTATCTTTGATATAATTTCTATGTTGTGTTATTTTTGAGGATTCGATTAGGGTATCACCTAATAAGAACTCCCAAAGGCACGAAAAACAGACAAGAACATTTAAAGATAGATTTAAATTTCAATATCAATGAAGAAACTACAATATAACATAGCCTTTGGAGAGGGCTATACTCTTTTCCACTGTTTCCCACAGGAACTCGCTACCAAAATCTTCACTACTTCCTCTCAGTTCACTCCCACTATTTAAAACTAAAAGCCCCAACAAGTTACTGTCTAATTACTAATATGCTCCTCCTACCTACCATCTCCATAACTATCGGTTGTACATATTCCACACACACACACTGTATAGGAATACTTTAAACTGTTTCTAAGATGAATGTATGAAAGTATTATTTGAAAAAT

Coding sequence (CDS)

ATGAATTTCACCTTTTACACTACACTTTTTTTGGTGCTCTCGTCTTCCTGTTCTAGCTCAGTTATTAGTAGAGGAATATTGGAATCAGACGTTTCAGGAAGCTTATTGCGTTACAGAACTAAGAGTTCTTCTCATGTTTTCAGTGTTAGAAGCTTTGGTGCCCGAGCAAATGGCTTGACTGATGATAGCAACGCCTTCTTAGCAGCATGGAGGATGGCCTGTGACTCAGCTGGAGTTGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTATATTTTCTGGCCCTTGCAAAAACGTGTCATCTCTAACAGTTAAAATGGAGGCAAGGGTCTAG

Protein sequence

MNFTFYTTLFLVLSSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKMEARV

Homology

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BLAST of CsGy7G001950 vs. NCBI nr
Match: KGN43365.1 (hypothetical protein Csa_7G027810 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.6e-43
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 14  SSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA 73
           + S SSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA
Sbjct: 35  TGSGSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA 94

Query: 74  CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME
Sbjct: 95  CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 132

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BLAST of CsGy7G001950 vs. NCBI nr
Match: XP_022952676.1 (exopolygalacturonase isoform X2 [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-42
Identity = 96/111 (86.49%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MNFTFYTTLFLVLSSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLT 60
           MNF F TTLFLVLSSSC SSV+SRGILE+D+SGSLLRYR K SS VFSVRSFGARANGLT
Sbjct: 1   MNFPFRTTLFLVLSSSCFSSVLSRGILEADISGSLLRYRAK-SSRVFSVRSFGARANGLT 60

Query: 61  DDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           DDSNAF   WRMAC SAGVVTFLIPKGTYLVGPV FSGPCKNVSSLTVKM+
Sbjct: 61  DDSNAFSQTWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK 110

[Close]

BLAST of CsGy7G001950 vs. NCBI nr
Match: XP_023554538.1 (exopolygalacturonase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-42
Identity = 96/111 (86.49%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MNFTFYTTLFLVLSSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLT 60
           MNF F TTLFLVLSSSC SSV+SRGILE+D+SGSLLRYR K SS VFSVRSFGARANGLT
Sbjct: 1   MNFPFRTTLFLVLSSSCFSSVLSRGILEADISGSLLRYRAK-SSRVFSVRSFGARANGLT 60

Query: 61  DDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           DDSNAF   WRMAC SAGVVTFLIPKGTYLVGPV FSGPCKNVSSLTVKM+
Sbjct: 61  DDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK 110

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BLAST of CsGy7G001950 vs. NCBI nr
Match: XP_022969159.1 (exopolygalacturonase isoform X2 [Cucurbita maxima])

HSP 1 Score: 176.8 bits (447), Expect = 4.2e-41
Identity = 94/111 (84.68%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MNFTFYTTLFLVLSSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLT 60
           MNF F TTLFLVLSSSC SSV+SRGILE+D+SGSLLRY  K SSHVFSVRSFGARANGLT
Sbjct: 1   MNFPFRTTLFLVLSSSCFSSVLSRGILEADISGSLLRYGAK-SSHVFSVRSFGARANGLT 60

Query: 61  DDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           DDS+AF   WRMAC SAGVVTFLIPKGTYLVGPV FSGPCKNVSSL VKM+
Sbjct: 61  DDSDAFTETWRMACASAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLMVKMK 110

[Close]

BLAST of CsGy7G001950 vs. NCBI nr
Match: XP_008451195.1 (PREDICTED: exopolygalacturonase isoform X1 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 20  SVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGV 79
           S +SRGILESDVSGSLLRYRTK SSHV+SVRSFGARANGLTDDSNAFLAAWR ACDSAGV
Sbjct: 4   SFLSRGILESDVSGSLLRYRTK-SSHVYSVRSFGARANGLTDDSNAFLAAWRTACDSAGV 63

Query: 80  VTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           VTFLIPKGTYLVGPV FSGPCKNVSSLTVKM+
Sbjct: 64  VTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK 94

[Close]

BLAST of CsGy7G001950 vs. TAIR10
Match: AT4G18180.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-14
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 26  ILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMAC-DSAGVVTFLI 85
           IL    +G+++    KSS  +  VRSFGARAN   D + AF+AAW  AC  S+  V  +I
Sbjct: 17  ILSPSEAGNIV---DKSSVFLVDVRSFGARANDHRDHTKAFVAAWDKACKSSSSSVNLII 76

Query: 86  PKGTYLVGPVIFSGPCKNVSSLTVKMEA 113
           P+G + VG + FSGPC NVS+LTV+++A
Sbjct: 77  PRGEFSVGSLRFSGPCTNVSNLTVRVKA 101

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BLAST of CsGy7G001950 vs. TAIR10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 42  SSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCK 101
           S+S+VF+V SFGA+ +G+TD + AFL AW+ AC SA   T ++PKGT+L+  + F GPCK
Sbjct: 23  SASNVFNVVSFGAKPDGVTDSTGAFLKAWQGACVSASSATVVVPKGTFLLKVITFGGPCK 82

Query: 102 N 103
           +
Sbjct: 83  S 83

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BLAST of CsGy7G001950 vs. TAIR10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-12
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 40  TKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGP 99
           + S+S VF+V SFGA+ +G+TD + AFL AW+ AC SA   T ++P GT+L+  + F GP
Sbjct: 21  SSSASIVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAASATVVVPTGTFLLKVITFGGP 80

Query: 100 CKN 103
           CK+
Sbjct: 81  CKS 83

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BLAST of CsGy7G001950 vs. TAIR10
Match: AT3G57510.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 5.0e-12
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 30  DVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKG-T 89
           DV   +    T   +   SV +FGA+ +G TDD+ AF  AW+ AC + GV TFL+PKG T
Sbjct: 51  DVLSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKT 110

Query: 90  YLVGPVIFSGPCKNVSSLTV 109
           YL+    F GPCK++ +  +
Sbjct: 111 YLLKSTRFRGPCKSLRNFQI 130

[Close]

BLAST of CsGy7G001950 vs. TAIR10
Match: AT1G02790.1 (polygalacturonase 4)

HSP 1 Score: 67.0 bits (162), Expect = 8.5e-12
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 46  VFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSS 105
           V+ +  FGA  +G T+   AFL  W   CDS    T L+PKGT+L GPVIF+GPCK+  +
Sbjct: 51  VYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVT 110

Query: 106 LTV 109
           + V
Sbjct: 111 VNV 113

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BLAST of CsGy7G001950 vs. Swiss-Prot
Match: sp|O23147|ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.0e-11
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 30  DVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKG-T 89
           DV   +    T   +   SV +FGA+ +G TDD+ AF  AW+ AC + GV TFL+PKG T
Sbjct: 51  DVLSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKT 110

Query: 90  YLVGPVIFSGPCKNVSSLTV 109
           YL+    F GPCK++ +  +
Sbjct: 111 YLLKSTRFRGPCKSLRNFQI 130

[Close]

BLAST of CsGy7G001950 vs. Swiss-Prot
Match: sp|P49062|PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 46  VFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSS 105
           V+ +  FGA  +G T+   AFL  W   CDS    T L+PKGT+L GPVIF+GPCK+  +
Sbjct: 51  VYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVT 110

Query: 106 LTV 109
           + V
Sbjct: 111 VNV 113

[Close]

BLAST of CsGy7G001950 vs. Swiss-Prot
Match: sp|Q9SFB7|QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 38  YRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKG-TYLVGPVIF 97
           Y  +SS   F+V +FGA+ANG  DDS AF+ AW  AC S G+V  + PK   Y++  V F
Sbjct: 62  YAPRSSPRSFNVNTFGAKANG-NDDSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTF 121

Query: 98  SGPCKNVSSLTVKMEARV 115
           SGPCK+ S +  K+  R+
Sbjct: 122 SGPCKS-SLIIFKIYGRI 137

[Close]

BLAST of CsGy7G001950 vs. Swiss-Prot
Match: sp|P48978|PGLR_MALDO (Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-10
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 40  TKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGP 99
           + + +   SV  FGA+ NG  DD+ AF+ AW+ AC S+G +  ++P+  YLV P+ FSGP
Sbjct: 92  SSAPAKTISVDDFGAKGNG-ADDTQAFVKAWKAACSSSGAMVLVVPQKNYLVRPIEFSGP 151

Query: 100 CKNVSSLTV 109
           CK+  +L +
Sbjct: 152 CKSQLTLQI 159

[Close]

BLAST of CsGy7G001950 vs. Swiss-Prot
Match: sp|Q8RY29|ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 18  SSSVISRGILESDVSG--SLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACD 77
           S S+I R     D++G  S +R   ++ + V SV  FGA+ +G TDD+ AF+ AW+ AC 
Sbjct: 41  SDSLIKR---REDITGLRSFVRASLRTPTTV-SVSDFGAKGDGKTDDTQAFVNAWKKACS 100

Query: 78  SAGVVTFLIPKG-TYLVGPVIFSGPCKNVSSLTV 109
           S G V  L+PKG TYL+  +  +GPC ++ ++ +
Sbjct: 101 SNGAVNLLVPKGNTYLLKSIQLTGPCNSILTVQI 130

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BLAST of CsGy7G001950 vs. TrEMBL
Match: tr|A0A0A0K0Z1|A0A0A0K0Z1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027810 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 14  SSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA 73
           + S SSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA
Sbjct: 35  TGSGSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA 94

Query: 74  CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME
Sbjct: 95  CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 132

[Close]

BLAST of CsGy7G001950 vs. TrEMBL
Match: tr|A0A1S3BQX3|A0A1S3BQX3_CUCME (exopolygalacturonase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492566 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-37
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 20  SVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGV 79
           S +SRGILESDVSGSLLRYRTK SSHV+SVRSFGARANGLTDDSNAFLAAWR ACDSAGV
Sbjct: 4   SFLSRGILESDVSGSLLRYRTK-SSHVYSVRSFGARANGLTDDSNAFLAAWRTACDSAGV 63

Query: 80  VTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           VTFLIPKGTYLVGPV FSGPCKNVSSLTVKM+
Sbjct: 64  VTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK 94

[Close]

BLAST of CsGy7G001950 vs. TrEMBL
Match: tr|A0A1S3BRP5|A0A1S3BRP5_CUCME (exopolygalacturonase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492566 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 49  VRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTV 108
           VRSFGARANGLTDDSNAFLAAWR ACDSAGVVTFLIPKGTYLVGPV FSGPCKNVSSLTV
Sbjct: 4   VRSFGARANGLTDDSNAFLAAWRTACDSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTV 63

Query: 109 KME 112
           KM+
Sbjct: 64  KMK 66

[Close]

BLAST of CsGy7G001950 vs. TrEMBL
Match: tr|W9QTY1|W9QTY1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013735 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 35  LLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPV 94
           L+R     S + F+VRSFGA+A+G TDDS AF+ AW+ AC+S G V+ +IP+GTYL+GPV
Sbjct: 151 LMRGEAFGSFNAFNVRSFGAQADGRTDDSQAFIEAWKEACESTGRVSLVIPRGTYLIGPV 210

Query: 95  IFSGPCKNVSSLTVKMEAR 114
            F GPC+NVSSLTV+MEAR
Sbjct: 211 KFDGPCENVSSLTVQMEAR 229

[Close]

BLAST of CsGy7G001950 vs. TrEMBL
Match: tr|A0A1Q3CNI3|A0A1Q3CNI3_CEPFO (Glyco_hydro_28 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_25269 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.7e-19
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 9   LFLVLSSSCSSSVISR-------GILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTD 68
           L LVLSS C + V+ R       G+   +V G  L      +S +F+V+SFGARA+G+ D
Sbjct: 1   LLLVLSSLCFNGVVGRGGWATMGGVEGFEVRGRSLADDVGKNSVLFNVKSFGARADGIND 60

Query: 69  DSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKMEA 113
           DS AF+A W+ AC + G V  LIPKGTYL+GPV FSGPCKN SS+   ++A
Sbjct: 61  DSKAFIAVWKEACKATGKVNLLIPKGTYLIGPVKFSGPCKNASSIIFHLKA 111

The following BLAST results are available for this feature:

BLAST of CsGy7G001950 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43365.1	2.6e-43	96.94	hypothetical protein Csa_7G027810 [Cucumis sativus]	[more]
XP_022952676.1	2.9e-42	86.49	exopolygalacturonase isoform X2 [Cucurbita moschata]	[more]
XP_023554538.1	2.9e-42	86.49	exopolygalacturonase isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022969159.1	4.2e-41	84.68	exopolygalacturonase isoform X2 [Cucurbita maxima]	[more]
XP_008451195.1	1.7e-37	92.39	PREDICTED: exopolygalacturonase isoform X1 [Cucumis melo]	[more]

BLAST of CsGy7G001950 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18180.1	4.1e-14	47.73	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	3.5e-13	52.46	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	3.8e-12	49.21	Pectin lyase-like superfamily protein	[more]
AT3G57510.1	5.0e-12	42.50	Pectin lyase-like superfamily protein	[more]
AT1G02790.1	8.5e-12	47.62	polygalacturonase 4	[more]

BLAST of CsGy7G001950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23147\|ADPG1_ARATH	9.0e-11	42.50	Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1	[more]
sp\|P49062\|PGLR1_ARATH	1.5e-10	47.62	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
sp\|Q9SFB7\|QRT2_ARATH	1.5e-10	46.15	Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2	[more]
sp\|P48978\|PGLR_MALDO	5.8e-10	42.03	Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1	[more]
sp\|Q8RY29\|ADPG2_ARATH	1.3e-09	39.36	Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2	[more]

BLAST of CsGy7G001950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K0Z1\|A0A0A0K0Z1_CUCSA	1.7e-43	96.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027810 PE=3 SV=1	[more]
tr\|A0A1S3BQX3\|A0A1S3BQX3_CUCME	1.1e-37	92.39	exopolygalacturonase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492566 PE=3 SV=...	[more]
tr\|A0A1S3BRP5\|A0A1S3BRP5_CUCME	2.8e-25	95.24	exopolygalacturonase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492566 PE=3 SV=...	[more]
tr\|W9QTY1\|W9QTY1_9ROSA	1.3e-19	62.03	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013735 PE=4 SV=1	[more]
tr\|A0A1Q3CNI3\|A0A1Q3CNI3_CEPFO	6.7e-19	49.55	Glyco_hydro_28 domain-containing protein (Fragment) OS=Cephalotus follicularis O...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G001950.1	CsGy7G001950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 29..114 e-value: 9.8E-18 score: 66.2
None	No IPR available	PANTHER	PTHR31375:SF11	GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE PECTINASE FAMILY PROTEIN	coord: 9..111
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 9..111
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	SSF51126	Pectin lyase-like	coord: 35..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G001950	ClCG02G003280	Watermelon (Charleston Gray)	cgybwcgB506
CsGy7G001950	Cp4.1LG15g06600	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G001950	MELO3C015699.2	Melon (DHL92) v3.6.1	cgybmedB472
CsGy7G001950	CsaV3_7G002090	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G001950	Cla97C02G029830	Watermelon (97103) v2	cgybwmbB502
CsGy7G001950	Carg04109	Silver-seed gourd	carcgybB0217

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G001950	Cucumber (Gy14) v2	cgybcgybB136
CsGy7G001950	Cucumber (Gy14) v2	cgybcgybB154
CsGy7G001950	Cucurbita maxima (Rimu)	cgybcmaB899
CsGy7G001950	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G001950	Cucurbita maxima (Rimu)	cgybcmaB957
CsGy7G001950	Cucurbita maxima (Rimu)	cgybcmaB959
CsGy7G001950	Cucurbita moschata (Rifu)	cgybcmoB877
CsGy7G001950	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G001950	Cucurbita moschata (Rifu)	cgybcmoB938
CsGy7G001950	Cucurbita pepo (Zucchini)	cgybcpeB919
CsGy7G001950	Cucurbita pepo (Zucchini)	cgybcpeB964
CsGy7G001950	Cucumber (Chinese Long) v2	cgybcuB321
CsGy7G001950	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G001950	Bottle gourd (USVL1VR-Ls)	cgyblsiB455
CsGy7G001950	Bottle gourd (USVL1VR-Ls)	cgyblsiB462
CsGy7G001950	Melon (DHL92) v3.5.1	cgybmeB454
CsGy7G001950	Melon (DHL92) v3.5.1	cgybmeB476
CsGy7G001950	Melon (DHL92) v3.6.1	cgybmedB451
CsGy7G001950	Watermelon (97103) v1	cgybwmB566
CsGy7G001950	Wild cucumber (PI 183967)	cgybcpiB328
CsGy7G001950	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G001950	Silver-seed gourd	carcgybB0361
CsGy7G001950	Silver-seed gourd	carcgybB0846
CsGy7G001950	Silver-seed gourd	carcgybB1049
CsGy7G001950	Cucumber (Chinese Long) v3	cgybcucB344
CsGy7G001950	Wax gourd	cgybwgoB641