CsGy7G001950.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G001950.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pectin lyase-like superfamily protein
Location	Chr7 : 1644994 .. 1648810 (-)
Sequence length	2230

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACTTCCATTTTGCATGATTCAACAAGCATGACATTCATGACGCTCAACCCACACGATCTCTCACCATTTTTTCTTACAACTAATGCTCTCTCAACCTCCGCCCTTCTCCGGTCCGGCGGCCCGTCGAGATTCTGTTCAACGGGCAGTGGCTCTAGGTGTATTTCTCTTTTTCATGTGTGCGACGGTTAACAATCAGAGACTTAGTGGGGGGAAAAGAAGTTAACGACGGTTAACTTTGGCGAATTCGAAATCCCCCTCTCCCATTTTATCAGCATCTCCGGTTGGAAATTTAAAACTCAAATACCGTTCCATTCATGAACCGGTAAGCTAAAAAAATCTCTTCCGATTTCAGTTTCTCTGAGCAGAAGCAAAGCTCTTGTTAAGCTATTAGCATGAATTTCACCTTTTACACTACACTTTTTTTGGTGCTCTCGTCTTCCTGTTCTAGCTCAGTTATTAGTAGAGGAATATTGGAATCAGACGTTTCAGGAAGCTTATTGCGTTACAGAACTAAGAGTTCTTCTCATGTTTTCAGTGTTAGAAGCTTTGGTGCCCGAGCAAATGGCTTGACTGATGATAGCAACGTCTGTTCTGCGTTTGTTTTTTGTTGCTTTTTTTTCTTTTTTTGTGGAAATTGTTTGAGATTTTACTTGATGAATTGTATTCCTTGAGCTCTGTTGCTCCCTTCAACTGTTGAGATTCTCTTCTCTGCTGCAATTTCCTGTACTTTTTATCCGTTTTTTGTTCCATTTCTTCAGCTCTCTAGAAACGACAACTTTGTTATTATATGCATTGTTCCTAAGGATTTCCATGAATCTCTCTTGTTGTGTTTTCTACTTGTCTACTCAAATTTAGAATCGTTCAATCAGATGTTTTCTGTTCTTAGTCCAATTTCTTGCTTGGTGGAAATGAAAATCCAGTTTCCTTCCAAATGGCGAGGATACATGATTAGGAATAGTAAAAAGTGTTTATTGACAAATTACATTGTGTTTGATTCTACATTCTTGAAGGGGTTTTAGGTGGTTCTCTAACAATCACAAGGTTTAATAGTACTATATGTGTGTGTGTGTGTGCTTTCTCATAAAACAATCAGTCTTTTTTTTTTTCAAATTGACAATATATTGTTTTCAAACGTGATGTTTCTGAGTAGGAAGTGGTTTTGCTTCAAAAAGATTAAGATCAGTTTTCAAAAGTTTTGATTTGCTTGTGATTCAGGCCTTCTTAGCAGCATGGAGGATGGCCTGTGACTCAGCTGGAGTTGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTATATTTTCTGGCCCTTGCAAAAACGTGTCATCTCTAACAGTTAAAATGGAGGCAAGGGTCTAGTCGTCTTCTTCTTTAGGCTTTCTTCGTCAAATTTGTTTGGTTTGAGACATTGCGCTCGAATGCAGGGCTATTTGAAGGCATCAACAAACCTTTCGAAATATGGTTCTGGTGCAGGCTGGATTGAGTTCAGATGGATGGAGGGGCTAACCTTGAATGGAGGTGGAACCTTTGATGGTCGAGGCGCTGAGGCATGGCCATTCAACAACTGCCGCGATGACTACAATTGCAAACTCCTTCCTACTGTAAATTCCATACCACATTTTGTTCTGTTTGAATTTTAATAAATTTCATGTCTTGAAAAACTAGAAATCGCAAGGATTGTTCTATTGCTGTCACTTGAAAACTGGTGAAATTATTTCAACGAACCATTTCGATCTCATGCCTTGAAACTTTAGGAATTGCAAGAAATGTTCCACTACAAACATATATTAGTAAGTTTAATAATGCATATCATTTCAAACTCATGTCTTGAAAGTTAAAACATTAGGACTTGGAAGAAACGTTATATTGCTGCCATTCGAAACATCAGTAAGATTCTTACAATATACCGTTTCAAACTCATGTCTTGAAGCATTGGTATTTCAAAAAATGTTTTATTCCTGCCGTTTGAAACATCAATTTAAATCTTAAAATGAGCGATTACAATTTGAAATATTATGAATTGCCATTCGAAAAATCAGTAAGATTCTTACAATGTCTTGGTTCTTTTTCAGAACTTGAAATTTGTGGCTTTGAATAATACGGTTGTTCAACACATAACTTCGCTGAACAGCAAGTTCTTTCACCTGGCTTTAGTTCAATGCAAGAGGTTCGTAGGTAGCGAACTCAAGATTTCTGCTCCAGAAAATAGTCCCAACACCGATGGCATCCACATTGACCGAAGTTCTAATATCCATTTTTCTTTATCACATATTCAAACGGGTGACGACTGCATATCCATCGGACAAGGGAACTCTCAAGTCACAATCTCTAGCGTCAACTGTGGACCTGGCCATGGGATCAGGTACATAGATTGCTACCAAAAGGTTTTATGCTTCTGTCATCTTTTATCCTATATTCAGCTACTAGAAGTAGTTTTTAGGATAACTGACTTTTGTTCACTGTAGTGTTGGAAGCTTGGGAAGATATCGAAATGAAGGAGACGTAAGCGGATTAGTAGTTAAAAATTGCAGCCTCACAGGTACCGCCAATGGGATCAGAATCAAGACATGGCCAAACTCTCCTGGTAGCAGCTCAGCCACAAACATGACATTTGAGAACATTACCATGAACAATGTGTCCAATCCAATTATCATTGATCAATCATACTGTCCATTCGGATTTTGTTCTTTCAAGGTAAGCCAGTGCTCTCTCAACTCAATCTTTTTACAAAAAGGGACCGTAAACACGTGAGCAAACTATAGTATTTTCAGATATAAATTTCATTGTAGTCTTTGGACTTTCAAGTCCATTTTGTCGTAGCTTTTTCTAGTTCTTGAACTTTCAAAAGATTAACCGATACTAGCTTAGAGAGACCCAACTAGTTATCATCAAAACTTACGTACTAAAAATGGATATTTTGAAAGCTTAGATACCAAAAGGAAATATCGTATCTATAAATACTTTTTAGACGTTTAGTTCAAAAAATATCCTTTCTTAAACAAATTTCAAAACTATGGCAAAAAGTTATTGAATGGCAAATGCATTTCGGAGATGAGAAGCTGATTTATTTGGACAGGAACCATCTCTTGTGAAGCTGAGTGATATTTATTTCAAGAACATTAGAGGAACATCTTCCTCTAAAGTGGCTGTGGCATTAGAATGCAGCAAGGGATTCCCATGTCAGAATGTGAACCTTGAAAATGTTCACTTGGATCTTTCATCAGGAGAAAATCATCCATCTTCTACTTGCAAATATGTTAGAGCCAGGTATATTGGCACCCAAATCCCACCCCCTTGTGCTTAGATTTACAAATCATATGTTTCTAGTTTTCTCTTATGTTTTTAAACATTTATAGGATGTGGAATTAGAGATTATTCTATCTGGTTAATTATTATACTATCTTTGATATAATTTCTATGTTGTGTTATTTTTGAGGATTCGATTAGGGTATCACCTAATAAGAACTCCCAAAGGCACGAAAAACAGACAAGAACATTTAAAGATAGATTTAAATTTCAATATCAATGAAGAAACTACAATATAACATAGCCTTTGGAGAGGGCTATACTCTTTTCCACTGTTTCCCACAGGAACTCGCTACCAAAATCTTCACTACTTCCTCTCAGTTCACTCCCACTATTTAAAACTAAAAGCCCCAACAAGTTACTGTCTAATTACTAATATGCTCCTCCTACCTACCATCTCCATAACTATCGGTTGTACATATTCCACACACACACACTGTATAGGAATACTTTAAACTGTTTCTAAGATGAATGTATGAAAGTATTATTTGAAAAAT

mRNA sequence

GAAAAACTTCCATTTTGCATGATTCAACAAGCATGACATTCATGACGCTCAACCCACACGATCTCTCACCATTTTTTCTTACAACTAATGCTCTCTCAACCTCCGCCCTTCTCCGGTCCGGCGGCCCGTCGAGATTCTGTTCAACGGGCAGTGGCTCTAGGTGTATTTCTCTTTTTCATGTGTGCGACGGTTAACAATCAGAGACTTAGTGGGGGGAAAAGAAGTTAACGACGGTTAACTTTGGCGAATTCGAAATCCCCCTCTCCCATTTTATCAGCATCTCCGGTTGGAAATTTAAAACTCAAATACCGTTCCATTCATGAACCGGTAAGCTAAAAAAATCTCTTCCGATTTCAGTTTCTCTGAGCAGAAGCAAAGCTCTTGTTAAGCTATTAGCATGAATTTCACCTTTTACACTACACTTTTTTTGGTGCTCTCGTCTTCCTGTTCTAGCTCAGTTATTAGTAGAGGAATATTGGAATCAGACGTTTCAGGAAGCTTATTGCGTTACAGAACTAAGAGTTCTTCTCATGTTTTCAGTGTTAGAAGCTTTGGTGCCCGAGCAAATGGCTTGACTGATGATAGCAACGCCTTCTTAGCAGCATGGAGGATGGCCTGTGACTCAGCTGGAGTTGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTATATTTTCTGGCCCTTGCAAAAACGTGTCATCTCTAACAGTTAAAATGGAGGCAAGGGTCTAGTCGTCTTCTTCTTTAGGCTTTCTTCGTCAAATTTGTTTGGTTTGAGACATTGCGCTCGAATGCAGGGCTATTTGAAGGCATCAACAAACCTTTCGAAATATGGTTCTGGTGCAGGCTGGATTGAGTTCAGATGGATGGAGGGGCTAACCTTGAATGGAGGTGGAACCTTTGATGGTCGAGGCGCTGAGGCATGGCCATTCAACAACTGCCGCGATGACTACAATTGCAAACTCCTTCCTACTAACTTGAAATTTGTGGCTTTGAATAATACGGTTGTTCAACACATAACTTCGCTGAACAGCAAGTTCTTTCACCTGGCTTTAGTTCAATGCAAGAGGTTCGTAGGTAGCGAACTCAAGATTTCTGCTCCAGAAAATAGTCCCAACACCGATGGCATCCACATTGACCGAAGTTCTAATATCCATTTTTCTTTATCACATATTCAAACGGGTGACGACTGCATATCCATCGGACAAGGGAACTCTCAAGTCACAATCTCTAGCGTCAACTGTGGACCTGGCCATGGGATCAGTGTTGGAAGCTTGGGAAGATATCGAAATGAAGGAGACGTAAGCGGATTAGTAGTTAAAAATTGCAGCCTCACAGGTACCGCCAATGGGATCAGAATCAAGACATGGCCAAACTCTCCTGGTAGCAGCTCAGCCACAAACATGACATTTGAGAACATTACCATGAACAATGTGTCCAATCCAATTATCATTGATCAATCATACTGTCCATTCGGATTTTGTTCTTTCAAGGAACCATCTCTTGTGAAGCTGAGTGATATTTATTTCAAGAACATTAGAGGAACATCTTCCTCTAAAGTGGCTGTGGCATTAGAATGCAGCAAGGGATTCCCATGTCAGAATGTGAACCTTGAAAATGTTCACTTGGATCTTTCATCAGGAGAAAATCATCCATCTTCTACTTGCAAATATGTTAGAGCCAGGTATATTGGCACCCAAATCCCACCCCCTTGTGCTTAGATTTACAAATCATATGTTTCTAGTTTTCTCTTATGTTTTTAAACATTTATAGGATGTGGAATTAGAGATTATTCTATCTGGTTAATTATTATACTATCTTTGATATAATTTCTATGTTGTGTTATTTTTGAGGATTCGATTAGGGTATCACCTAATAAGAACTCCCAAAGGCACGAAAAACAGACAAGAACATTTAAAGATAGATTTAAATTTCAATATCAATGAAGAAACTACAATATAACATAGCCTTTGGAGAGGGCTATACTCTTTTCCACTGTTTCCCACAGGAACTCGCTACCAAAATCTTCACTACTTCCTCTCAGTTCACTCCCACTATTTAAAACTAAAAGCCCCAACAAGTTACTGTCTAATTACTAATATGCTCCTCCTACCTACCATCTCCATAACTATCGGTTGTACATATTCCACACACACACACTGTATAGGAATACTTTAAACTGTTTCTAAGATGAATGTATGAAAGTATTATTTGAAAAAT

Coding sequence (CDS)

ATGAATTTCACCTTTTACACTACACTTTTTTTGGTGCTCTCGTCTTCCTGTTCTAGCTCAGTTATTAGTAGAGGAATATTGGAATCAGACGTTTCAGGAAGCTTATTGCGTTACAGAACTAAGAGTTCTTCTCATGTTTTCAGTGTTAGAAGCTTTGGTGCCCGAGCAAATGGCTTGACTGATGATAGCAACGCCTTCTTAGCAGCATGGAGGATGGCCTGTGACTCAGCTGGAGTTGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTATATTTTCTGGCCCTTGCAAAAACGTGTCATCTCTAACAGTTAAAATGGAGGCAAGGGTCTAG

Protein sequence

MNFTFYTTLFLVLSSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKMEARV

Homology

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BLAST of CsGy7G001950.1 vs. NCBI nr
Match: KGN43365.1 (hypothetical protein Csa_7G027810 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.6e-43
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 14  SSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA 73
           + S SSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA
Sbjct: 35  TGSGSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA 94

Query: 74  CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME
Sbjct: 95  CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 132

[Close]

BLAST of CsGy7G001950.1 vs. NCBI nr
Match: XP_022952676.1 (exopolygalacturonase isoform X2 [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-42
Identity = 96/111 (86.49%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MNFTFYTTLFLVLSSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLT 60
           MNF F TTLFLVLSSSC SSV+SRGILE+D+SGSLLRYR K SS VFSVRSFGARANGLT
Sbjct: 1   MNFPFRTTLFLVLSSSCFSSVLSRGILEADISGSLLRYRAK-SSRVFSVRSFGARANGLT 60

Query: 61  DDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           DDSNAF   WRMAC SAGVVTFLIPKGTYLVGPV FSGPCKNVSSLTVKM+
Sbjct: 61  DDSNAFSQTWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK 110

[Close]

BLAST of CsGy7G001950.1 vs. NCBI nr
Match: XP_023554538.1 (exopolygalacturonase isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-42
Identity = 96/111 (86.49%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MNFTFYTTLFLVLSSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLT 60
           MNF F TTLFLVLSSSC SSV+SRGILE+D+SGSLLRYR K SS VFSVRSFGARANGLT
Sbjct: 1   MNFPFRTTLFLVLSSSCFSSVLSRGILEADISGSLLRYRAK-SSRVFSVRSFGARANGLT 60

Query: 61  DDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           DDSNAF   WRMAC SAGVVTFLIPKGTYLVGPV FSGPCKNVSSLTVKM+
Sbjct: 61  DDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK 110

[Close]

BLAST of CsGy7G001950.1 vs. NCBI nr
Match: XP_022969159.1 (exopolygalacturonase isoform X2 [Cucurbita maxima])

HSP 1 Score: 176.8 bits (447), Expect = 4.2e-41
Identity = 94/111 (84.68%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MNFTFYTTLFLVLSSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLT 60
           MNF F TTLFLVLSSSC SSV+SRGILE+D+SGSLLRY  K SSHVFSVRSFGARANGLT
Sbjct: 1   MNFPFRTTLFLVLSSSCFSSVLSRGILEADISGSLLRYGAK-SSHVFSVRSFGARANGLT 60

Query: 61  DDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           DDS+AF   WRMAC SAGVVTFLIPKGTYLVGPV FSGPCKNVSSL VKM+
Sbjct: 61  DDSDAFTETWRMACASAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLMVKMK 110

[Close]

BLAST of CsGy7G001950.1 vs. NCBI nr
Match: XP_008451195.1 (PREDICTED: exopolygalacturonase isoform X1 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 20  SVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGV 79
           S +SRGILESDVSGSLLRYRTK SSHV+SVRSFGARANGLTDDSNAFLAAWR ACDSAGV
Sbjct: 4   SFLSRGILESDVSGSLLRYRTK-SSHVYSVRSFGARANGLTDDSNAFLAAWRTACDSAGV 63

Query: 80  VTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           VTFLIPKGTYLVGPV FSGPCKNVSSLTVKM+
Sbjct: 64  VTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK 94

[Close]

BLAST of CsGy7G001950.1 vs. TAIR10
Match: AT4G18180.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-14
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 26  ILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMAC-DSAGVVTFLI 85
           IL    +G+++    KSS  +  VRSFGARAN   D + AF+AAW  AC  S+  V  +I
Sbjct: 17  ILSPSEAGNIV---DKSSVFLVDVRSFGARANDHRDHTKAFVAAWDKACKSSSSSVNLII 76

Query: 86  PKGTYLVGPVIFSGPCKNVSSLTVKMEA 113
           P+G + VG + FSGPC NVS+LTV+++A
Sbjct: 77  PRGEFSVGSLRFSGPCTNVSNLTVRVKA 101

[Close]

BLAST of CsGy7G001950.1 vs. TAIR10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 42  SSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCK 101
           S+S+VF+V SFGA+ +G+TD + AFL AW+ AC SA   T ++PKGT+L+  + F GPCK
Sbjct: 23  SASNVFNVVSFGAKPDGVTDSTGAFLKAWQGACVSASSATVVVPKGTFLLKVITFGGPCK 82

Query: 102 N 103
           +
Sbjct: 83  S 83

[Close]

BLAST of CsGy7G001950.1 vs. TAIR10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-12
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 40  TKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGP 99
           + S+S VF+V SFGA+ +G+TD + AFL AW+ AC SA   T ++P GT+L+  + F GP
Sbjct: 21  SSSASIVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAASATVVVPTGTFLLKVITFGGP 80

Query: 100 CKN 103
           CK+
Sbjct: 81  CKS 83

[Close]

BLAST of CsGy7G001950.1 vs. TAIR10
Match: AT3G57510.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 5.0e-12
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 30  DVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKG-T 89
           DV   +    T   +   SV +FGA+ +G TDD+ AF  AW+ AC + GV TFL+PKG T
Sbjct: 51  DVLSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKT 110

Query: 90  YLVGPVIFSGPCKNVSSLTV 109
           YL+    F GPCK++ +  +
Sbjct: 111 YLLKSTRFRGPCKSLRNFQI 130

[Close]

BLAST of CsGy7G001950.1 vs. TAIR10
Match: AT1G02790.1 (polygalacturonase 4)

HSP 1 Score: 67.0 bits (162), Expect = 8.5e-12
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 46  VFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSS 105
           V+ +  FGA  +G T+   AFL  W   CDS    T L+PKGT+L GPVIF+GPCK+  +
Sbjct: 51  VYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVT 110

Query: 106 LTV 109
           + V
Sbjct: 111 VNV 113

[Close]

BLAST of CsGy7G001950.1 vs. Swiss-Prot
Match: sp|O23147|ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.0e-11
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 30  DVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKG-T 89
           DV   +    T   +   SV +FGA+ +G TDD+ AF  AW+ AC + GV TFL+PKG T
Sbjct: 51  DVLSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKT 110

Query: 90  YLVGPVIFSGPCKNVSSLTV 109
           YL+    F GPCK++ +  +
Sbjct: 111 YLLKSTRFRGPCKSLRNFQI 130

[Close]

BLAST of CsGy7G001950.1 vs. Swiss-Prot
Match: sp|P49062|PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 46  VFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSS 105
           V+ +  FGA  +G T+   AFL  W   CDS    T L+PKGT+L GPVIF+GPCK+  +
Sbjct: 51  VYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVT 110

Query: 106 LTV 109
           + V
Sbjct: 111 VNV 113

[Close]

BLAST of CsGy7G001950.1 vs. Swiss-Prot
Match: sp|Q9SFB7|QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 38  YRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKG-TYLVGPVIF 97
           Y  +SS   F+V +FGA+ANG  DDS AF+ AW  AC S G+V  + PK   Y++  V F
Sbjct: 62  YAPRSSPRSFNVNTFGAKANG-NDDSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTF 121

Query: 98  SGPCKNVSSLTVKMEARV 115
           SGPCK+ S +  K+  R+
Sbjct: 122 SGPCKS-SLIIFKIYGRI 137

[Close]

BLAST of CsGy7G001950.1 vs. Swiss-Prot
Match: sp|P48978|PGLR_MALDO (Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-10
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 40  TKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGP 99
           + + +   SV  FGA+ NG  DD+ AF+ AW+ AC S+G +  ++P+  YLV P+ FSGP
Sbjct: 92  SSAPAKTISVDDFGAKGNG-ADDTQAFVKAWKAACSSSGAMVLVVPQKNYLVRPIEFSGP 151

Query: 100 CKNVSSLTV 109
           CK+  +L +
Sbjct: 152 CKSQLTLQI 159

[Close]

BLAST of CsGy7G001950.1 vs. Swiss-Prot
Match: sp|Q8RY29|ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 18  SSSVISRGILESDVSG--SLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACD 77
           S S+I R     D++G  S +R   ++ + V SV  FGA+ +G TDD+ AF+ AW+ AC 
Sbjct: 41  SDSLIKR---REDITGLRSFVRASLRTPTTV-SVSDFGAKGDGKTDDTQAFVNAWKKACS 100

Query: 78  SAGVVTFLIPKG-TYLVGPVIFSGPCKNVSSLTV 109
           S G V  L+PKG TYL+  +  +GPC ++ ++ +
Sbjct: 101 SNGAVNLLVPKGNTYLLKSIQLTGPCNSILTVQI 130

[Close]

BLAST of CsGy7G001950.1 vs. TrEMBL
Match: tr|A0A0A0K0Z1|A0A0A0K0Z1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027810 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 14  SSSCSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA 73
           + S SSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA
Sbjct: 35  TGSGSSSVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMA 94

Query: 74  CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME
Sbjct: 95  CDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 132

[Close]

BLAST of CsGy7G001950.1 vs. TrEMBL
Match: tr|A0A1S3BQX3|A0A1S3BQX3_CUCME (exopolygalacturonase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492566 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-37
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 20  SVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGV 79
           S +SRGILESDVSGSLLRYRTK SSHV+SVRSFGARANGLTDDSNAFLAAWR ACDSAGV
Sbjct: 4   SFLSRGILESDVSGSLLRYRTK-SSHVYSVRSFGARANGLTDDSNAFLAAWRTACDSAGV 63

Query: 80  VTFLIPKGTYLVGPVIFSGPCKNVSSLTVKME 112
           VTFLIPKGTYLVGPV FSGPCKNVSSLTVKM+
Sbjct: 64  VTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK 94

[Close]

BLAST of CsGy7G001950.1 vs. TrEMBL
Match: tr|A0A1S3BRP5|A0A1S3BRP5_CUCME (exopolygalacturonase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492566 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 49  VRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTV 108
           VRSFGARANGLTDDSNAFLAAWR ACDSAGVVTFLIPKGTYLVGPV FSGPCKNVSSLTV
Sbjct: 4   VRSFGARANGLTDDSNAFLAAWRTACDSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTV 63

Query: 109 KME 112
           KM+
Sbjct: 64  KMK 66

[Close]

BLAST of CsGy7G001950.1 vs. TrEMBL
Match: tr|W9QTY1|W9QTY1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013735 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 35  LLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPV 94
           L+R     S + F+VRSFGA+A+G TDDS AF+ AW+ AC+S G V+ +IP+GTYL+GPV
Sbjct: 151 LMRGEAFGSFNAFNVRSFGAQADGRTDDSQAFIEAWKEACESTGRVSLVIPRGTYLIGPV 210

Query: 95  IFSGPCKNVSSLTVKMEAR 114
            F GPC+NVSSLTV+MEAR
Sbjct: 211 KFDGPCENVSSLTVQMEAR 229

[Close]

BLAST of CsGy7G001950.1 vs. TrEMBL
Match: tr|A0A1Q3CNI3|A0A1Q3CNI3_CEPFO (Glyco_hydro_28 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_25269 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.7e-19
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 9   LFLVLSSSCSSSVISR-------GILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTD 68
           L LVLSS C + V+ R       G+   +V G  L      +S +F+V+SFGARA+G+ D
Sbjct: 1   LLLVLSSLCFNGVVGRGGWATMGGVEGFEVRGRSLADDVGKNSVLFNVKSFGARADGIND 60

Query: 69  DSNAFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKMEA 113
           DS AF+A W+ AC + G V  LIPKGTYL+GPV FSGPCKN SS+   ++A
Sbjct: 61  DSKAFIAVWKEACKATGKVNLLIPKGTYLIGPVKFSGPCKNASSIIFHLKA 111

The following BLAST results are available for this feature:

BLAST of CsGy7G001950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43365.1	2.6e-43	96.94	hypothetical protein Csa_7G027810 [Cucumis sativus]	[more]
XP_022952676.1	2.9e-42	86.49	exopolygalacturonase isoform X2 [Cucurbita moschata]	[more]
XP_023554538.1	2.9e-42	86.49	exopolygalacturonase isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022969159.1	4.2e-41	84.68	exopolygalacturonase isoform X2 [Cucurbita maxima]	[more]
XP_008451195.1	1.7e-37	92.39	PREDICTED: exopolygalacturonase isoform X1 [Cucumis melo]	[more]

BLAST of CsGy7G001950.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18180.1	4.1e-14	47.73	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	3.5e-13	52.46	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	3.8e-12	49.21	Pectin lyase-like superfamily protein	[more]
AT3G57510.1	5.0e-12	42.50	Pectin lyase-like superfamily protein	[more]
AT1G02790.1	8.5e-12	47.62	polygalacturonase 4	[more]

BLAST of CsGy7G001950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23147\|ADPG1_ARATH	9.0e-11	42.50	Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1	[more]
sp\|P49062\|PGLR1_ARATH	1.5e-10	47.62	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
sp\|Q9SFB7\|QRT2_ARATH	1.5e-10	46.15	Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2	[more]
sp\|P48978\|PGLR_MALDO	5.8e-10	42.03	Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1	[more]
sp\|Q8RY29\|ADPG2_ARATH	1.3e-09	39.36	Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2	[more]

BLAST of CsGy7G001950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K0Z1\|A0A0A0K0Z1_CUCSA	1.7e-43	96.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027810 PE=3 SV=1	[more]
tr\|A0A1S3BQX3\|A0A1S3BQX3_CUCME	1.1e-37	92.39	exopolygalacturonase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492566 PE=3 SV=...	[more]
tr\|A0A1S3BRP5\|A0A1S3BRP5_CUCME	2.8e-25	95.24	exopolygalacturonase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492566 PE=3 SV=...	[more]
tr\|W9QTY1\|W9QTY1_9ROSA	1.3e-19	62.03	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013735 PE=4 SV=1	[more]
tr\|A0A1Q3CNI3\|A0A1Q3CNI3_CEPFO	6.7e-19	49.55	Glyco_hydro_28 domain-containing protein (Fragment) OS=Cephalotus follicularis O...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0071555	cell wall organization
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G001950	CsGy7G001950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G001950.1	CsGy7G001950.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G001950.1.five_prime_UTR.1	CsGy7G001950.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G001950.1.exon.5	CsGy7G001950.1.exon.5	exon
CsGy7G001950.1.exon.4	CsGy7G001950.1.exon.4	exon
CsGy7G001950.1.exon.3	CsGy7G001950.1.exon.3	exon
CsGy7G001950.1.exon.2	CsGy7G001950.1.exon.2	exon
CsGy7G001950.1.exon.1	CsGy7G001950.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G001950.1.CDS.2	CsGy7G001950.1.CDS.2	CDS
CsGy7G001950.1.CDS.1	CsGy7G001950.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G001950.1.three_prime_UTR.4	CsGy7G001950.1.three_prime_UTR.4	three_prime_UTR
CsGy7G001950.1.three_prime_UTR.3	CsGy7G001950.1.three_prime_UTR.3	three_prime_UTR
CsGy7G001950.1.three_prime_UTR.2	CsGy7G001950.1.three_prime_UTR.2	three_prime_UTR
CsGy7G001950.1.three_prime_UTR.1	CsGy7G001950.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 29..114 e-value: 9.8E-18 score: 66.2
None	No IPR available	PANTHER	PTHR31375:SF11	GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE PECTINASE FAMILY PROTEIN	coord: 9..111
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 9..111
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	SSF51126	Pectin lyase-like	coord: 35..102