Cp4.1LG15g06600 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g06600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPectin lyase-like superfamily protein
LocationCp4.1LG15 : 7214923 .. 7217789 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGGTAAGTTAAAACAATCTCTTCCGATTTCAATTTCACTGAGCAGAAGCAAGGTTGTTAAGCTATTAGCATGAATTTCCCCTTTCGCACCACACTGTTCTTGGTGCTCTCATCTTCCTGTTTTAGCTCAGTTCTTAGTAGAGGAATATTGGAAGCAGACATTTCAGGAAGCTTATTGCGTTACAGAGCTAAGAGTTCTCGTGTTTTCAGTGTTAGAAGCTTTGGTGCTCGAGCAAATGGCTTAACTGATGATAGCAATGTCTGTTCTATGTTTGTTTGTGTTGATTTTCCTTGAGATTTTATTTGATGAACCGAATACCTTAATCTCTGTTTCTCCCTTCATCCGTTGAGCCTCGTCGCTGCTGCAATTTCCTGTAATTTTTGTGCCATTTTTTGCTTTTCCGTTTAGAATTGTTCAGTCACATGTGTTCTGCTACTTAGCTCAATTTCTTGCATGCTGGAAATGAAAAATCAGTTTCCTTCCAAATGGAGAGTTTGATTCATTACTTTATGTTTGATTCAATCCTGTTAAAAAGGGGTTTTAGGTGCTCCATAACAATCACAGGGTTAAAAGTTACTATATATGTAAGATTTCTCATACACCAATTTGTTTTGTTTTCTAAACTCAACAATATATTATGATGTTCTTGAGTAGGAAGTGGTTTTGGTCCTGCAAAAAATGCTCTCAAACACACCCTTAAAAGAGTAAAAGATTAAGAACACTTTTCAGAAGTTTTCATTTGCTTGTGATTCAGGCCTTCTCAGAAACATGGAGAATGGCCTGTGGTTCAGCTGGAGTGGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTAAATTTTCAGGCCCTTGCAAAAATGTGTCGTCTCTAACGGTTAAAATGAAGGCAAGGGTCTAATCTTCTACGTATTTTCATCTTTTTACGTCGGGTCCGTTTGGTTTGAGCTCGAATTTTCTTTTGCAGGGATATTTGAAGGCATCAACAGACCTGTCAAAGTATGGTTCTGGTGCAGGCTGGATTGAGTTCAGATGGATGGAGGGGCTAACGTTGACTGGAGGTGGAACCTTCGATGGCCGAGGCGCTGAGGCGTGGCCATTCAACAACTGCCTTGATGACCACAATTGCAATCTCCTTCCTACTGTAAGTTCCATTCCACATTTTGTTCTGTTTGATTCTTAACCAATTTGTGTCTTGAAACATTAGAAATTGTAAGAACTAGTGAAATTATTTCAAAGAATCATTTCAAACTCATGCCTTAAAATATTAGGAATTGCAAAACTGTTCTGTTGCTGTTGTTGGCTGCCATTTGTAACATTAGCAAGATTCTTACAATGATTCAGTTCTTTTTCAGAACTTGAAATTCGTGGCTATGAATAACACGGTTGTTCGACGCATAACTTCGCTAAACAGCAAATTCTTTCACTTGGCTTTAGTACAATGCAAGAGGTTCAGAGGTAGCAATCTCAAGATTTCAGCTCCAGCAAATAGTCCCAACACGGATGGTATCCACATCGACCGAAGCTCGAACATCCATCTTTCTCGATCACATATTCAAACTGGCGACGATTGCATATCCATTGGACAAGGGAACTCTCAAGTCACAATCACCGGCATCGATTGTGGACCAGGTCATGGGATCAGGTACATAGATTGCTGCCAACAAGTTTTATGCTTCTGTCATCATGAACTTGTATTCAGCTTACTAGAAACAGCATTCTGGACAACATGTGTTTTGTTCATTGCAGTGTTGGAAGCTTGGGAAGATATCAAAATGAAGGAGATGTAAGCGGATTAGTAGTAAAAAATTGTAGCCTCACAGGTACCACCAATGGGATCAGAATCAAGACATGGCCAAATTCTCCTGGCAGCAGCTCAGCCACAAACATGACATTTAAGAACTTCGCCATGAACAATGTGTCCAATCCAATTATCATTGATCAATCGTACTGTCCATTCAGATCTTGTTCTTTTAAGGTATGCCAGTGCTCTCTCAATATATATATTTCTTTTTTCAAAAAAGTGATTGCAAAGTTTCCTTCACGTGAGAACGGTAACGGTATAATATTTGTTAAGTTTATATCTCATTTTAGTCCTTAGACTTTCAAGTTTGTTTATATCTCATTTTAATCCTTAGACTTTCAAGTTCGTTTATATCTCGTTTTTAATCCTTATACTTTCAAGTTCGTTTATATCTCATTTTAGTCCTTAGACTCTCAAGTTCGTTTATATCTCGTTTTAGTCCTTAGACTCTCAAGTTCGTTTATATCTCATTTTAGTCCTTAGACTCTCAAGTTTGTTTATATCTCATTTTAGTCCTTAGACTTTCAAGTTCGTTTTGTCCCACCCTCTGAAGTTGCAAATTTGTTCAATCTTCTATTAAGTCTTTTAGTTGCCGAATTTTTAGCTATTTTGATACCTAGTCGGTGGACTTTCAAAAAGAAAATTATTGAAAGTTTGGAGACACCAAAATAGACATTCTCAAAACTTTTGAACGAAAAAGGACATTTTGAAAGCTATAAAACCAAAAATAGAATAAACACAAAAGTTTATGGACAAAAAAGATACGATCTAACATGTTTTTTTGAAAGTTCAGGTCATAAAAAATCGTCTCCTAAACAAATTTCAAAATCATTGCAAAAAATGATTATATGAACGTGATGCATTTGAACAGGCACCATCTCTAGTGAAGCTGAGTGATATTTACTTCAAGAACATAAAAGGAACCTCTTCCTCTAAGGTGGCTGTGGCATTAGAATGCAGCAAGGGATTCCCATGTCAGAATGTGAACCTTGAAAATGTTCACTTGCTTCTTTCATCAGGTCAAAATCACCCTTCTTCTACTTGCAAATAT

mRNA sequence

ATGAATCGCTCAGTTCTTAGTAGAGGAATATTGGAAGCAGACATTTCAGGAAGCTTATTGCGTTACAGAGCTAAGAGTTCTCGTGTTTTCAGTGTTAGAAGCTTTGGTGCTCGAGCAAATGGCTTAACTGATGATAGCAATGCCTTCTCAGAAACATGGAGAATGGCCTGTGGTTCAGCTGGAGTGGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTAAATTTTCAGGCCCTTGCAAAAATGTGTCGTCTCTAACGGTTAAAATGAAGGCAAGGGGATATTTGAAGGCATCAACAGACCTGTCAAAGTATGGTTCTGGTGCAGGCTGGATTGAGTTCAGATGGATGGAGGGGCTAACGTTGACTGGAGGTGGAACCTTCGATGGCCGAGGCGCTGAGGCGTGGCCATTCAACAACTGCCTTGATGACCACAATTGCAATCTCCTTCCTACTAACTTGAAATTCGTGGCTATGAATAACACGGCACCATCTCTAGTGAAGCTGAGTGATATTTACTTCAAGAACATAAAAGGAACCTCTTCCTCTAAGGTGGCTGTGGCATTAGAATGCAGCAAGGGATTCCCATGTCAGAATGTGAACCTTGAAAATGTTCACTTGCTTCTTTCATCAGGTCAAAATCACCCTTCTTCTACTTGCAAATAT

Coding sequence (CDS)

ATGAATCGCTCAGTTCTTAGTAGAGGAATATTGGAAGCAGACATTTCAGGAAGCTTATTGCGTTACAGAGCTAAGAGTTCTCGTGTTTTCAGTGTTAGAAGCTTTGGTGCTCGAGCAAATGGCTTAACTGATGATAGCAATGCCTTCTCAGAAACATGGAGAATGGCCTGTGGTTCAGCTGGAGTGGTAACTTTCCTGATTCCAAAAGGAACCTATTTGGTTGGTCCAGTTAAATTTTCAGGCCCTTGCAAAAATGTGTCGTCTCTAACGGTTAAAATGAAGGCAAGGGGATATTTGAAGGCATCAACAGACCTGTCAAAGTATGGTTCTGGTGCAGGCTGGATTGAGTTCAGATGGATGGAGGGGCTAACGTTGACTGGAGGTGGAACCTTCGATGGCCGAGGCGCTGAGGCGTGGCCATTCAACAACTGCCTTGATGACCACAATTGCAATCTCCTTCCTACTAACTTGAAATTCGTGGCTATGAATAACACGGCACCATCTCTAGTGAAGCTGAGTGATATTTACTTCAAGAACATAAAAGGAACCTCTTCCTCTAAGGTGGCTGTGGCATTAGAATGCAGCAAGGGATTCCCATGTCAGAATGTGAACCTTGAAAATGTTCACTTGCTTCTTTCATCAGGTCAAAATCACCCTTCTTCTACTTGCAAATAT

Protein sequence

MNRSVLSRGILEADISGSLLRYRAKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLDDHNCNLLPTNLKFVAMNNTAPSLVKLSDIYFKNIKGTSSSKVAVALECSKGFPCQNVNLENVHLLLSSGQNHPSSTCKY
Homology
[Close]
BLAST of Cp4.1LG15g06600 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.5e-27
Identity = 67/186 (36.02%), Postives = 98/186 (52.69%), Query Frame = 1 

Query: 30  FSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSL 89
           F +   GA  NG TD + A  E W  ACG  G  T LIPKG +LVGP+ F+GPCK     
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKG---- 100

Query: 90  TVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLDDHN 149
            V ++  G L A+TDLS+Y     WIE   ++ L +TG G  DG+G   W  N+C+  ++
Sbjct: 101 DVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYD 160

Query: 150 CNLLPTNLKFVAMNNTAPSLVKLSDIYFKNIKGTSSSKVAVALECSKGFPCQNVNLENVH 209
           C +LP +L    +NN   S + L +  F ++      K  +  + +   P  + N + +H
Sbjct: 161 CKILPNSLVMDFVNNGEVSGITLLNSKFFHM-NMYKCKDMLIKDVNVTAPGDSPNTDGIH 220

Query: 210 LLLSSG 216
           +  SSG
Sbjct: 221 MGDSSG 221

[Close]
BLAST of Cp4.1LG15g06600 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.9e-26
Identity = 66/186 (35.48%), Postives = 96/186 (51.61%), Query Frame = 1 

Query: 30  FSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSL 89
           F +   GA  NG TD + A  E W  ACG  G  T LIPKG +LVG + F+GPCK     
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKG---- 100

Query: 90  TVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLDDHN 149
            V ++  G L A+TDLS+Y     WIE   ++ L +TG G  DG+G   W  N+C   ++
Sbjct: 101 DVTIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYD 160

Query: 150 CNLLPTNLKFVAMNNTAPSLVKLSDIYFKNIKGTSSSKVAVALECSKGFPCQNVNLENVH 209
           C +LP +L    +NN   S V L +  F ++       + +  + +   P  + N + +H
Sbjct: 161 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIK-DVTVTAPGDSPNTDGIH 220

Query: 210 LLLSSG 216
           +  SSG
Sbjct: 221 MGDSSG 221

[Close]
BLAST of Cp4.1LG15g06600 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.6e-26
Identity = 67/186 (36.02%), Postives = 96/186 (51.61%), Query Frame = 1 

Query: 30  FSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSL 89
           F +   GA  NG TD + A  E W  ACG  G  T LIPKG +LVG + F+GPCK     
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKG---- 100

Query: 90  TVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLDDHN 149
            V ++  G L A+TDLS+Y     WIE   ++ L +TG G  DG+G   W  N+C   ++
Sbjct: 101 DVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYD 160

Query: 150 CNLLPTNLKFVAMNNTAPSLVKLSDIYFKNIKGTSSSKVAVALECSKGFPCQNVNLENVH 209
           C +LP +L    +NN   S V L +  F ++      K  +  + +   P  + N + +H
Sbjct: 161 CKILPNSLVMDFVNNGEVSGVTLLNSKFFHM-NMYRCKDMLIKDVTVTAPGDSPNTDGIH 220

Query: 210 LLLSSG 216
           +  SSG
Sbjct: 221 MGDSSG 221

[Close]
BLAST of Cp4.1LG15g06600 vs. Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-22
Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 1 

Query: 24  AKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPC 83
           AK      V++ GA+ +  TDDS AF+  W+ AC +   +T  +PKG Y+V  ++F GPC
Sbjct: 64  AKPGAAVDVKASGAKGDSKTDDSAAFAAAWKEACAAGSTIT--VPKGEYMVESLEFKGPC 123

Query: 84  KNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGG-GTFDGRGAEAWPFN 143
           K      V ++  G  KA   +      AGWI+F  +   TL G    FDG+G+ AW  N
Sbjct: 124 KG----PVTLELNGNFKAPATVKTTKPHAGWIDFENIADFTLNGNKAIFDGQGSLAWKAN 183

Query: 144 NCLDDHNCNLLPTNLKFVAMNNTAPSLV-----KLSDIYFKNIKGTSSSKVAVALECSKG 203
           +C     CN LP N++F  + N+  + +     KL  +   N K  + S + +       
Sbjct: 184 DCAKTGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGI------D 243

Query: 204 FPCQNVNLENVHLLLSSGQN 218
            P +++N + +H+  S+G N
Sbjct: 244 APPESLNTDGIHIGRSNGVN 251

[Close]
BLAST of Cp4.1LG15g06600 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.9e-22
Identity = 70/214 (32.71%), Postives = 103/214 (48.13%), Query Frame = 1 

Query: 26  SSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKN 85
           S  VF+V  +GA+  G  D S A  + W+ AC S G  T LIPKG Y +G V   GPCK 
Sbjct: 6   SGSVFNVNDYGAKGAG--DISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKG 65

Query: 86  VSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCL 145
                +  +  G +KA  D SK+ S  GW+ F  ++GLT++G GT DG+G  AW  NNC 
Sbjct: 66  SK---IGFQIDGVVKAPADPSKFKSD-GWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCD 125

Query: 146 DDHNCNLLPTNLKFVAMNNTAP-------------SLVKLSDIYFKNI----KGTSSSKV 205
            + NC     NL+F  + +                ++++  DI F+++     GTS +  
Sbjct: 126 KNPNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTD 185

Query: 206 AVALECSKGFPCQNVNLENVHLLLSSGQNHPSST 223
            + +  SKG    N  +      +S G    + T
Sbjct: 186 GIHVGISKGVTITNTKIATGDDCISIGPGSQNVT 213

[Close]
BLAST of Cp4.1LG15g06600 vs. TrEMBL
Match: A0A0A0K0Z1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027810 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.1e-75
Identity = 152/212 (71.70%), Postives = 166/212 (78.30%), Query Frame = 1 

Query: 4   SVLSRGILEADISGSLLRYRAKSS-RVFSVRSFGARANGLTDDSNAFSETWRMACGSAGV 63
           SV+SRGILE+D+SGSLLRYR KSS  VFSVRSFGARANGLTDDSNAF   WRMAC SAGV
Sbjct: 41  SVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGV 100

Query: 64  VTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEG 123
           VTFLIPKGTYLVGPV FSGPCKNVSSLTVKM   GYLKAST+LSKYGSGAGWIEFRWMEG
Sbjct: 101 VTFLIPKGTYLVGPVIFSGPCKNVSSLTVKM--EGYLKASTNLSKYGSGAGWIEFRWMEG 160

Query: 124 LTLTGGGTFDGRGAEAWPFNNCLDDHNCNLLPTNLKFVAMNNTAPSLVKLSDIYFKNIKG 183
           LTL GGGTFDGRGAEAWPFNNC DD+NC LLPTNLKFVA+NNT    +   +  F ++  
Sbjct: 161 LTLNGGGTFDGRGAEAWPFNNCRDDYNCKLLPTNLKFVALNNTVVQHITSLNSKFFHL-A 220

Query: 184 TSSSKVAVALECSKGFPCQNVNLENVHLLLSS 215
               K  V  E     P  + N + +H+  SS
Sbjct: 221 LVQCKRFVGSELKISAPENSPNTDGIHIDRSS 249

[Close]
BLAST of Cp4.1LG15g06600 vs. TrEMBL
Match: A0A061E2R1_THECC (Pectin lyase-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_007591 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.9e-52
Identity = 107/204 (52.45%), Postives = 142/204 (69.61%), Query Frame = 1 

Query: 19  LLRYRAKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVK 78
           L  Y+ +SS +F+V+SFGARA+GLTDDS AF   W+ AC + G V  +IP+GTYLVGPVK
Sbjct: 47  LSHYKGRSSHLFNVKSFGARADGLTDDSKAFRAAWKKACQATGEVDLVIPRGTYLVGPVK 106

Query: 79  FSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEA 138
           F+GPC NVS +TV++K  GYLKA+T+LS+YG  AGW+EF+W+EGL LTGGGTFDG+GA+A
Sbjct: 107 FAGPCTNVSKITVRVK--GYLKATTNLSQYGYSAGWVEFKWVEGLILTGGGTFDGQGAKA 166

Query: 139 WPFNNCLDDHNCNLLPTNLKFVAMNNT-APSLVKLSDIYF-------KNIKGTSSSKVAV 198
           WP+N C  D NC LLPTN+KFV  N T   S+  ++  +F       KN KG   SK+ +
Sbjct: 167 WPYNRCPTDFNCKLLPTNVKFVGTNRTVVRSITSVNSKFFHMALVECKNFKG---SKIKI 226

Query: 199 ALECSKGFPCQNVNLENVHLLLSS 215
           +       P  + N + +H+  SS
Sbjct: 227 SA------PADSPNTDGIHIERSS 239

[Close]
BLAST of Cp4.1LG15g06600 vs. TrEMBL
Match: M5VH72_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019563mg PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-51
Identity = 102/149 (68.46%), Postives = 113/149 (75.84%), Query Frame = 1 

Query: 17  GSLLRYRAKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGP 76
           G  L +RAK+S VF V SFGARA+G TDDSNAF   W+ AC S G     IPKGTY++GP
Sbjct: 5   GRSLHHRAKNSAVFDVMSFGARADGRTDDSNAFMAAWKEACQSTGRAHITIPKGTYIIGP 64

Query: 77  VKFSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGA 136
           +KFSGPC NVSSLT+    RGYLKA+TDL KYG G  W+EF WMEGLTLTGGGTFDGRGA
Sbjct: 65  LKFSGPCLNVSSLTI----RGYLKATTDLRKYGFGGSWLEFGWMEGLTLTGGGTFDGRGA 124

Query: 137 EAWPFNNCLDDHNCNLLPTNLKFVAMNNT 166
            AWP N C  D NC LLPT+LKFVAMN T
Sbjct: 125 RAWPHNKCPTDSNCKLLPTSLKFVAMNKT 149

[Close]
BLAST of Cp4.1LG15g06600 vs. TrEMBL
Match: B9HPN0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s17010g PE=3 SV=2)

HSP 1 Score: 210.7 bits (535), Expect = 1.9e-51
Identity = 109/212 (51.42%), Postives = 139/212 (65.57%), Query Frame = 1 

Query: 11  LEADISGSLLRYRAKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKG 70
           LE +    +  ++  SS +F V+ FGARA+G TDDS AF   W+ AC + G V  LIPKG
Sbjct: 33  LEVEARRPISHHKGNSSLLFDVKRFGARADGRTDDSKAFIAAWKEACRATGKVELLIPKG 92

Query: 71  TYLVGPVKFSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGT 130
           TYL+GPVKF+GPCKNVSSLT      GYLKA+  LS+YGSG GW+EF W+E LTLTGGGT
Sbjct: 93  TYLIGPVKFAGPCKNVSSLT------GYLKATAKLSRYGSGTGWVEFGWLERLTLTGGGT 152

Query: 131 FDGRGAEAWPFNNCLDDHNCNLLPTNLKFVAMNNT-APSLVKLSDIYF-------KNIKG 190
           FDG+GA+AWP+NNC +D  C LLPTN+KFVAMN T    +  L+  +F       KN KG
Sbjct: 153 FDGQGAKAWPYNNCTNDSKCKLLPTNVKFVAMNQTVVQGITSLNSKFFHIALVECKNFKG 212

Query: 191 TSSSKVAVALECSKGFPCQNVNLENVHLLLSS 215
           T   K+ ++       P  + N + +H+  SS
Sbjct: 213 T---KIKISA------PADSPNTDGIHVERSS 229

[Close]
BLAST of Cp4.1LG15g06600 vs. TrEMBL
Match: A0A0D2SSX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G013400 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.1e-51
Identity = 109/211 (51.66%), Postives = 144/211 (68.25%), Query Frame = 1 

Query: 17  GSLLRYR-AKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVG 76
           G LL Y   ++S  F+V++FGA+A+GLTDD+ AF   W  AC + G V  +IPKGTYLVG
Sbjct: 35  GQLLPYNNQRTSHFFNVKTFGAQADGLTDDTKAFLSAWNKACQATGEVDIMIPKGTYLVG 94

Query: 77  PVKFSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRG 136
           P+KF+GPC+NVS + V MK  GYLKA+T+L KYG GAGW+EFRW+EGLTLTGGGTFDG+G
Sbjct: 95  PLKFAGPCENVSKIVVHMK--GYLKATTNLFKYGDGAGWVEFRWIEGLTLTGGGTFDGQG 154

Query: 137 AEAWPFNNCLDDHNCNLLPT---NLKFVAMNNT-APSLVKLSDIYF-------KNIKGTS 196
           A+AWP+N+C  D NC LLPT   N+KF+AMN T    +  ++  +F       KN KG  
Sbjct: 155 AKAWPYNSCSTDFNCKLLPTLQQNVKFLAMNRTIVRGITSVNSKFFHMALVECKNFKG-- 214

Query: 197 SSKVAVALECSKGFPCQNVNLENVHLLLSSG 216
            SK+ ++       P  + N + +H+  SSG
Sbjct: 215 -SKIKISA------PADSPNTDGIHIQRSSG 234

[Close]
BLAST of Cp4.1LG15g06600 vs. TAIR10
Match: AT4G18180.1 (AT4G18180.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 172.2 bits (435), Expect = 3.7e-43
Identity = 94/192 (48.96%), Postives = 117/192 (60.94%), Query Frame = 1 

Query: 32  VRSFGARANGLTDDSNAFSETWRMAC-GSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLT 91
           VRSFGARAN   D + AF   W  AC  S+  V  +IP+G + VG ++FSGPC NVS+LT
Sbjct: 37  VRSFGARANDHRDHTKAFVAAWDKACKSSSSSVNLIIPRGEFSVGSLRFSGPCTNVSNLT 96

Query: 92  VKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLDDHNC 151
           V++KA      STDLSKY SG GWI+F W+ GLTLTGGGTFDG+GA AWPFNNC  D NC
Sbjct: 97  VRVKA------STDLSKYRSGGGWIQFGWINGLTLTGGGTFDGQGALAWPFNNCTSDSNC 156

Query: 152 NLLPTNLKFVAMNNTAPSLVKLSDIYF--------KNIKGTSSSKVAVALECSKGFPCQN 211
            LLPT+LKFV MN T    +   +  F        ++ KGT  +  A         P  +
Sbjct: 157 KLLPTSLKFVGMNRTVVRRISSVNSKFFHIALVECRDFKGTRLNITA---------PSDS 213

Query: 212 VNLENVHLLLSS 215
            N + +H+  SS
Sbjct: 217 PNTDGIHIERSS 213

[Close]
BLAST of Cp4.1LG15g06600 vs. TAIR10
Match: AT1G78400.1 (AT1G78400.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 58/132 (43.94%), Postives = 83/132 (62.88%), Query Frame = 1 

Query: 28  RVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVS 87
           +VF VRS+GAR +G TD++ AF++ W+ AC   G+    IP GT+ +G V F+GPCK+  
Sbjct: 33  KVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVAFTGPCKSRI 92

Query: 88  SLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLDD 147
           S  +K    G L A  D +     + WI FR+++ LT++GGG  DG+G+ +WP NNC   
Sbjct: 93  SFIIK----GTLLAPKDPNAIKQDS-WIIFRYVDYLTVSGGGILDGQGSYSWPLNNCRQT 152

Query: 148 HNCNLLPTNLKF 160
           HNC  LP N+ F
Sbjct: 153 HNCRALPMNMGF 159

[Close]
BLAST of Cp4.1LG15g06600 vs. TAIR10
Match: AT3G14040.1 (AT3G14040.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 6.6e-24
Identity = 62/192 (32.29%), Postives = 99/192 (51.56%), Query Frame = 1 

Query: 32  VRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTV 91
           V++ GA+ +G TDDS AF+  W+ AC +   +T  +PKG YLV  ++F GPCK      V
Sbjct: 73  VKASGAKGDGKTDDSAAFAAAWKEACAAGSTIT--VPKGEYLVESLEFKGPCKG----PV 132

Query: 92  KMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGG-GTFDGRGAEAWPFNNCLDDHNC 151
            ++  G  KA   +      AGWI+F  +   TL G    FDG+G+ AW  N+C     C
Sbjct: 133 TLELNGNFKAPATVKTTKPHAGWIDFENLADFTLNGNKAIFDGQGSLAWKANDCAKTGKC 192

Query: 152 NLLPTNLKFVAMNNTAPSLV-----KLSDIYFKNIKGTSSSKVAVALECSKGFPCQNVNL 211
           N LP N++F  + N+  + +     KL  +   N K  + + + +        P +++N 
Sbjct: 193 NSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLTDIGI------DAPPESLNT 252

Query: 212 ENVHLLLSSGQN 218
           + +H+  S+G N
Sbjct: 253 DGIHIGRSNGVN 252

[Close]
BLAST of Cp4.1LG15g06600 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 1 

Query: 24  AKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPC 83
           AK      V++ GA+ +  TDDS AF+  W+ AC +   +T  +PKG Y+V  ++F GPC
Sbjct: 64  AKPGAAVDVKASGAKGDSKTDDSAAFAAAWKEACAAGSTIT--VPKGEYMVESLEFKGPC 123

Query: 84  KNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGG-GTFDGRGAEAWPFN 143
           K      V ++  G  KA   +      AGWI+F  +   TL G    FDG+G+ AW  N
Sbjct: 124 KG----PVTLELNGNFKAPATVKTTKPHAGWIDFENIADFTLNGNKAIFDGQGSLAWKAN 183

Query: 144 NCLDDHNCNLLPTNLKFVAMNNTAPSLV-----KLSDIYFKNIKGTSSSKVAVALECSKG 203
           +C     CN LP N++F  + N+  + +     KL  +   N K  + S + +       
Sbjct: 184 DCAKTGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGI------D 243

Query: 204 FPCQNVNLENVHLLLSSGQN 218
            P +++N + +H+  S+G N
Sbjct: 244 APPESLNTDGIHIGRSNGVN 251

[Close]
BLAST of Cp4.1LG15g06600 vs. TAIR10
Match: AT1G43080.1 (AT1G43080.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 1 

Query: 28  RVFSVRSFGARANGLTDDSNAFSETWRMACGS-AGVVTFLIPKGTYLVGPVKFSGPCKNV 87
           +VF+VR +G+R +G TD++NAF+  W+ AC   +G     +PKGT+ +G V+F GPCKN 
Sbjct: 29  KVFNVRRYGSRPDGKTDNANAFTSVWKRACTRISGSSKIYVPKGTFYLGGVEFVGPCKNP 88

Query: 88  SSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLD 147
               +     G L A  +         WI FR++  L+++G GT DG+G  +WP N+C  
Sbjct: 89  IEFVID----GTLLAPANPRDIKQDT-WINFRYINNLSISGSGTLDGQGKYSWPLNDCHK 148

Query: 148 DHNCNLLPTNLKFVAMNNTAPSLVKLSDIYFKNIK 182
           + NC  L   + F  +NN+     ++ DI   N K
Sbjct: 149 NTNCPKLAMTMGFAFVNNS-----RIKDITSLNSK 173

[Close]
BLAST of Cp4.1LG15g06600 vs. NCBI nr
Match: gi|659100640|ref|XP_008451195.1| (PREDICTED: exopolygalacturonase isoform X2 [Cucumis melo])

HSP 1 Score: 302.0 bits (772), Expect = 8.8e-79
Identity = 157/219 (71.69%), Postives = 174/219 (79.45%), Query Frame = 1 

Query: 1   MNRSVLSRGILEADISGSLLRYRAKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSA 60
           MNRS LSRGILE+D+SGSLLRYR KSS V+SVRSFGARANGLTDDSNAF   WR AC SA
Sbjct: 1   MNRSFLSRGILESDVSGSLLRYRTKSSHVYSVRSFGARANGLTDDSNAFLAAWRTACDSA 60

Query: 61  GVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWM 120
           GVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK  GYLKAST+LSKYGSGAGWIEFRWM
Sbjct: 61  GVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK--GYLKASTNLSKYGSGAGWIEFRWM 120

Query: 121 EGLTLTGGGTFDGRGAEAWPFNNCLDDHNCNLLPTNLKFVAMNNT-APSLVKLSDIYFK- 180
           EGLTLTGGGTFDGRG+EAWPFNNC DD+NC LLPTNLKFVA+NNT    +  L+  +F  
Sbjct: 121 EGLTLTGGGTFDGRGSEAWPFNNCRDDYNCKLLPTNLKFVALNNTVVQHITSLNSKFFHL 180

Query: 181 ---NIKGTSSSKVAVALECSKGFPCQNVNLENVHLLLSS 215
                KG   SK+ ++       P  + N + +H+  SS
Sbjct: 181 ALVQCKGFIGSKLKISA------PENSPNTDGIHIDRSS 211

[Close]
BLAST of Cp4.1LG15g06600 vs. NCBI nr
Match: gi|659100638|ref|XP_008451194.1| (PREDICTED: exopolygalacturonase isoform X1 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 6.3e-77
Identity = 154/216 (71.30%), Postives = 171/216 (79.17%), Query Frame = 1 

Query: 4   SVLSRGILEADISGSLLRYRAKSSRVFSVRSFGARANGLTDDSNAFSETWRMACGSAGVV 63
           S LSRGILE+D+SGSLLRYR KSS V+SVRSFGARANGLTDDSNAF   WR AC SAGVV
Sbjct: 20  SFLSRGILESDVSGSLLRYRTKSSHVYSVRSFGARANGLTDDSNAFLAAWRTACDSAGVV 79

Query: 64  TFLIPKGTYLVGPVKFSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEGL 123
           TFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK  GYLKAST+LSKYGSGAGWIEFRWMEGL
Sbjct: 80  TFLIPKGTYLVGPVKFSGPCKNVSSLTVKMK--GYLKASTNLSKYGSGAGWIEFRWMEGL 139

Query: 124 TLTGGGTFDGRGAEAWPFNNCLDDHNCNLLPTNLKFVAMNNT-APSLVKLSDIYFK---- 183
           TLTGGGTFDGRG+EAWPFNNC DD+NC LLPTNLKFVA+NNT    +  L+  +F     
Sbjct: 140 TLTGGGTFDGRGSEAWPFNNCRDDYNCKLLPTNLKFVALNNTVVQHITSLNSKFFHLALV 199

Query: 184 NIKGTSSSKVAVALECSKGFPCQNVNLENVHLLLSS 215
             KG   SK+ ++       P  + N + +H+  SS
Sbjct: 200 QCKGFIGSKLKISA------PENSPNTDGIHIDRSS 227

[Close]
BLAST of Cp4.1LG15g06600 vs. NCBI nr
Match: gi|700188132|gb|KGN43365.1| (hypothetical protein Csa_7G027810 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 5.9e-75
Identity = 152/212 (71.70%), Postives = 166/212 (78.30%), Query Frame = 1 

Query: 4   SVLSRGILEADISGSLLRYRAKSS-RVFSVRSFGARANGLTDDSNAFSETWRMACGSAGV 63
           SV+SRGILE+D+SGSLLRYR KSS  VFSVRSFGARANGLTDDSNAF   WRMAC SAGV
Sbjct: 41  SVISRGILESDVSGSLLRYRTKSSSHVFSVRSFGARANGLTDDSNAFLAAWRMACDSAGV 100

Query: 64  VTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMKARGYLKASTDLSKYGSGAGWIEFRWMEG 123
           VTFLIPKGTYLVGPV FSGPCKNVSSLTVKM   GYLKAST+LSKYGSGAGWIEFRWMEG
Sbjct: 101 VTFLIPKGTYLVGPVIFSGPCKNVSSLTVKM--EGYLKASTNLSKYGSGAGWIEFRWMEG 160

Query: 124 LTLTGGGTFDGRGAEAWPFNNCLDDHNCNLLPTNLKFVAMNNTAPSLVKLSDIYFKNIKG 183
           LTL GGGTFDGRGAEAWPFNNC DD+NC LLPTNLKFVA+NNT    +   +  F ++  
Sbjct: 161 LTLNGGGTFDGRGAEAWPFNNCRDDYNCKLLPTNLKFVALNNTVVQHITSLNSKFFHL-A 220

Query: 184 TSSSKVAVALECSKGFPCQNVNLENVHLLLSS 215
               K  V  E     P  + N + +H+  SS
Sbjct: 221 LVQCKRFVGSELKISAPENSPNTDGIHIDRSS 249

[Close]
BLAST of Cp4.1LG15g06600 vs. NCBI nr
Match: gi|659100642|ref|XP_008451196.1| (PREDICTED: exopolygalacturonase isoform X3 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 9.4e-65
Identity = 132/188 (70.21%), Postives = 146/188 (77.66%), Query Frame = 1 

Query: 32  VRSFGARANGLTDDSNAFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTV 91
           VRSFGARANGLTDDSNAF   WR AC SAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTV
Sbjct: 4   VRSFGARANGLTDDSNAFLAAWRTACDSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTV 63

Query: 92  KMKARGYLKASTDLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLDDHNCN 151
           KMK  GYLKAST+LSKYGSGAGWIEFRWMEGLTLTGGGTFDGRG+EAWPFNNC DD+NC 
Sbjct: 64  KMK--GYLKASTNLSKYGSGAGWIEFRWMEGLTLTGGGTFDGRGSEAWPFNNCRDDYNCK 123

Query: 152 LLPTNLKFVAMNNT-APSLVKLSDIYFK----NIKGTSSSKVAVALECSKGFPCQNVNLE 211
           LLPTNLKFVA+NNT    +  L+  +F       KG   SK+ ++       P  + N +
Sbjct: 124 LLPTNLKFVALNNTVVQHITSLNSKFFHLALVQCKGFIGSKLKISA------PENSPNTD 183

Query: 212 NVHLLLSS 215
            +H+  SS
Sbjct: 184 GIHIDRSS 183

[Close]
BLAST of Cp4.1LG15g06600 vs. NCBI nr
Match: gi|778730087|ref|XP_011659695.1| (PREDICTED: exopolygalacturonase, partial [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 3.4e-54
Identity = 113/167 (67.66%), Postives = 124/167 (74.25%), Query Frame = 1 

Query: 48  AFSETWRMACGSAGVVTFLIPKGTYLVGPVKFSGPCKNVSSLTVKMKARGYLKASTDLSK 107
           AF   WRMAC SAGVVTFLIPKGTYLVGPV FSGPCKNVSSLTVKM   GYLKAST+LSK
Sbjct: 33  AFLAAWRMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKM--EGYLKASTNLSK 92

Query: 108 YGSGAGWIEFRWMEGLTLTGGGTFDGRGAEAWPFNNCLDDHNCNLLPTNLKFVAMNNTAP 167
           YGSGAGWIEFRWMEGLTL GGGTFDGRGAEAWPFNNC DD+NC LLPTNLKFVA+NNT  
Sbjct: 93  YGSGAGWIEFRWMEGLTLNGGGTFDGRGAEAWPFNNCRDDYNCKLLPTNLKFVALNNTVV 152

Query: 168 SLVKLSDIYFKNIKGTSSSKVAVALECSKGFPCQNVNLENVHLLLSS 215
             +   +  F ++      K  V  E     P  + N + +H+  SS
Sbjct: 153 QHITSLNSKFFHL-ALVQCKRFVGSELKISAPENSPNTDGIHIDRSS 196

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g06600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR3_MAIZE3.5e-2736.02Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
PGLR2_MAIZE3.9e-2635.48Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR1_MAIZE6.6e-2636.02Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR2_ARATH2.0e-2231.50Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=... [more]
PGLR2_PLAAC9.9e-2232.71Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
BLAST of Cp4.1LG15g06600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K0Z1_CUCSA4.1e-7571.70Uncharacterized protein OS=Cucumis sativus GN=Csa_7G027810 PE=3 SV=1[more]
A0A061E2R1_THECC2.9e-5252.45Pectin lyase-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_007591... [more]
M5VH72_PRUPE1.1e-5168.46Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019563mg PE=3 SV=1[more]
B9HPN0_POPTR1.9e-5151.42Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s17010g PE=3 SV=2[more]
A0A0D2SSX7_GOSRA4.1e-5151.66Uncharacterized protein OS=Gossypium raimondii GN=B456_008G013400 PE=3 SV=1[more]
BLAST of Cp4.1LG15g06600 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18180.13.7e-4348.96 Pectin lyase-like superfamily protein[more]
AT1G78400.11.1e-2643.94 Pectin lyase-like superfamily protein[more]
AT3G14040.16.6e-2432.29 Pectin lyase-like superfamily protein[more]
AT3G07850.11.1e-2331.50 Pectin lyase-like superfamily protein[more]
AT1G43080.11.2e-2236.13 Pectin lyase-like superfamily protein[more]
BLAST of Cp4.1LG15g06600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100640|ref|XP_008451195.1|8.8e-7971.69PREDICTED: exopolygalacturonase isoform X2 [Cucumis melo][more]
gi|659100638|ref|XP_008451194.1|6.3e-7771.30PREDICTED: exopolygalacturonase isoform X1 [Cucumis melo][more]
gi|700188132|gb|KGN43365.1|5.9e-7571.70hypothetical protein Csa_7G027810 [Cucumis sativus][more]
gi|659100642|ref|XP_008451196.1|9.4e-6570.21PREDICTED: exopolygalacturonase isoform X3 [Cucumis melo][more]
gi|778730087|ref|XP_011659695.1|3.4e-5467.66PREDICTED: exopolygalacturonase, partial [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
molecular_function GO:0016829 lyase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g06600.1Cp4.1LG15g06600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 57..164
score: 8.7
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 26..223
score: 4.14
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 24..163
score: 7.1E-30coord: 164..224
score: 5.9
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..166
score: 6.1
NoneNo IPR availablePANTHERPTHR31375:SF11GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEINcoord: 1..166
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g06600Cucsa.099870Cucumber (Gy14) v1cgycpeB0206
Cp4.1LG15g06600CmoCh19G008310Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g06600Csa7G027810Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g06600ClCG02G003280Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g06600CSPI07G02230Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g06600Lsi11G013040Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g06600MELO3C015699.2Melon (DHL92) v3.6.1cpemedB265
Cp4.1LG15g06600CsaV3_7G002090Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g06600Bhi05G001340Wax gourdcpewgoB0326
Cp4.1LG15g06600CsGy7G001950Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g06600Carg04109Silver-seed gourdcarcpeB0281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g06600Cucurbita pepo (Zucchini)cpecpeB280
Cp4.1LG15g06600Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g06600Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g06600Cucumber (Gy14) v1cgycpeB0287
Cp4.1LG15g06600Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g06600Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g06600Cucurbita maxima (Rimu)cmacpeB560
Cp4.1LG15g06600Cucurbita maxima (Rimu)cmacpeB613
Cp4.1LG15g06600Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g06600Cucurbita moschata (Rifu)cmocpeB513
Cp4.1LG15g06600Cucurbita moschata (Rifu)cmocpeB562
Cp4.1LG15g06600Wild cucumber (PI 183967)cpecpiB251
Cp4.1LG15g06600Cucumber (Chinese Long) v2cpecuB250
Cp4.1LG15g06600Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g06600Watermelon (Charleston Gray)cpewcgB235
Cp4.1LG15g06600Watermelon (97103) v1cpewmB268
Cp4.1LG15g06600Melon (DHL92) v3.5.1cpemeB227
Cp4.1LG15g06600Melon (DHL92) v3.5.1cpemeB213
Cp4.1LG15g06600Cucumber (Gy14) v2cgybcpeB751
Cp4.1LG15g06600Silver-seed gourdcarcpeB0484
Cp4.1LG15g06600Silver-seed gourdcarcpeB1189
Cp4.1LG15g06600Silver-seed gourdcarcpeB1481
Cp4.1LG15g06600Cucumber (Chinese Long) v3cpecucB0316