CsGy6G035840 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G035840
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiongalactosyltransferase family protein
LocationChr6 : 31528113 .. 31530338 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATTCTCGTATAGCAAGGTTTGTTACCGAGGTTGCACCACCACAGATTATCAGTGTCATGAGGCGCCGCACATCAAAAGTGTTGGATACCATCAGTGAAGAGGATAGAGAGTGCAACAAGAATGAATATCCTGCTGCTCCCCCAAGAAGCCTATCATCGTCAACCACCTCTGCCTCTATGGTTGTTGCTGCCAATTCTATGTACTTCGTCCGAAACATAAGCAGACCTTTCTCCAAAATCAATGATTGAATCTGTGTGATTTTGAGTGGATAATAGGGGCCTTATATAAGGCTTCAACACCATCTCCTGTCATTGAATTTTCATGTCCTTGTCGACCGAGTCCCGGAACTTTGTATTTGCATGGTTTCCAGTGAACTTGCTAAGTCTGTAAAATGCAACCATGTGTATAGTTAGGCTAGAATCTGCAATGTTCCAATGCATAAGAGTGCTGTCACTCAGTCCATTAGTTAGTAGTGTGTTTTGAGATGGTAAAGCATTTAAATCACGCCATTAGTTATGTTTTTGCTTGGACTAATGGCAGTCCATTAGTTAACAATTTAGTCGAGATTGAAATGGGGAATTTGTAATGTTCTAGTGCAAAAAAGAATACTATCGTTGGGTCTATTAGTTAGTAGTGTTCTTGTTTTAAGACGGTTTAAAATCACACCATTAATTGGTTTTTTGTTTCAACTAATGGCAATTAGTTAAACATTTATTGAAGTTTGAAATGGGAAATTGTATTGTTCTAATGCACAAGAATAGTTAGTGGTGTTCGTGTTCTAAGATGGTTAACCATTTAATCCTCACCATATTCATTCAAGATGTTTTCAATATGTTACAAAATGGAACACTAATCTTTCGTATGAGATTGATTGTTGATACCAACCTTTGCTTTGGAGGAGTTCCTATCTTTCTGTTTGCCCGCTCTAGAAGAAGACGTGATTGTACTCTTTCTGGATGTTTCTGATTCAACCTTTTCCTTCAGTTTCTCTAGGGCTGTTAATAATCATTAACAATCAAAGTGAGAAACACATCGAGAAAACATTTGTATGAAGAGACATAAAAAAATATTATTTATTTATTTATGAAGCAGCTTCGCTGAAAACAACACATACTTCCTAACAAATTAACCCTGCGGCCTTATTTACTTTTGAAACGTGAAGAAAGAGCAGAGTGGATTTGATGCACGGACCAAGGAATATGGAACCCAACAATTTCAGTTACTTAGGTAATTGGTAAATTAGGGCAGTTTTTTTTCCGAGTAGTCAAAAGAGACGAGTTGTTACCAGAGACATAAGTAGGCTGAAGGAACTCAATTGAACTGGAAGGAAGGTTATGTACGGGACAAGAATCATTATCAGCCTTTTGCAGCAATTTCTTGAAACGCTTAACCTGAAACATATGAATCTAAGAATAAGCAAGTTGGATTAAGAAAATAGCTCAATTATTCATCTCTTAAACTTTGTTTAACCAGAAACAAAGAAAGCTCAACCAAAAGGTATTACCGTCTAACAGAACTATAAAGCTCACTTACGTCTGATAGATTATCACAGAATTGTACAAGGTCCAAGGGTATTATGATTTTACGTTAAATTGCAAGTGTAGTCCCTAAATTATCACATCTTTATTTATATGATCTTTCATCCTTAGTTTCAAAAGTGTAATAGATTATTGAACTTTTAATTTTGAGTCCAATATACTTTCAACTTTAACGAGTGTTTAATTAGATATTCAATTTTGTTACCAATAGGTGTCTATTTTTTATTATTCAAGCAACTACACAAAATGACAGTAGGATTTTCTTTTTAAAAAATTGAAAGATTAGGGTTACTACACAGAAAATTGAATTTGAAGACTAATATATAATTACAGTAACTAATTGATCGATTGATTTTTTATCAATTTTGAATATGTTAGAAAACGCAGTGAGAGGCATAAAACCCCAATGAAATCACGAAAACAACAAAATTGAATTGTAACGGCTTGATCACAAAATACCTCATCCTTTCTCAGCAATGTGAAACAACGCCCAGACTGCCCAGCTCTTGCAGTCCTACCAGCTCGATGAATGTATGTTTTTATAAATGCAGGCATATCGTAATTAATAACATTTTTCACACCCTCAACATCCATTCCACGAGTCATGGCATCAGAACTAACAAGTACTTGAATCTCCCCTCCCCGGAAAGCATTCAGTGTCTTGCTGCAGAACGCATGTAA

mRNA sequence

ATGGCAAATTCTCGTATAGCAAGGTTTGTTACCGAGGTTGCACCACCACAGATTATCAGTGTCATGAGGCGCCGCACATCAAAAGTGTTGGATACCATCAGTGAAGAGGATAGAGAGTGCAACAAGAATGAATATCCTGCTGCTCCCCCAAGAAGCCTATCATCGTCAACCACCTCTGCCTCTATGGGGCCTTATATAAGGCTTCAACACCATCTCCTGTCATTGAATTTTCATGTCCTTGTCGACCGAGTCCCGGAACTTTGTATTTGCATGGTTTCCAGTGAACTTGCTAAGTCTGTAAAATGCAACCATAAAGAGCAGAGTGGATTTGATGCACGGACCAAGGAATATGGAACCCAACAATTTCAGTTACTTAGGCATATCGTAATTAATAACATTTTTCACACCCTCAACATCCATTCCACGAGTCATGGCATCAGAACTAACAAGTACTTGAATCTCCCCTCCCCGGAAAGCATTCAGTGTCTTGCTGCAGAACGCATGTAA

Coding sequence (CDS)

ATGGCAAATTCTCGTATAGCAAGGTTTGTTACCGAGGTTGCACCACCACAGATTATCAGTGTCATGAGGCGCCGCACATCAAAAGTGTTGGATACCATCAGTGAAGAGGATAGAGAGTGCAACAAGAATGAATATCCTGCTGCTCCCCCAAGAAGCCTATCATCGTCAACCACCTCTGCCTCTATGGGGCCTTATATAAGGCTTCAACACCATCTCCTGTCATTGAATTTTCATGTCCTTGTCGACCGAGTCCCGGAACTTTGTATTTGCATGGTTTCCAGTGAACTTGCTAAGTCTGTAAAATGCAACCATAAAGAGCAGAGTGGATTTGATGCACGGACCAAGGAATATGGAACCCAACAATTTCAGTTACTTAGGCATATCGTAATTAATAACATTTTTCACACCCTCAACATCCATTCCACGAGTCATGGCATCAGAACTAACAAGTACTTGAATCTCCCCTCCCCGGAAAGCATTCAGTGTCTTGCTGCAGAACGCATGTAA

Protein sequence

MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSASMGPYIRLQHHLLSLNFHVLVDRVPELCICMVSSELAKSVKCNHKEQSGFDARTKEYGTQQFQLLRHIVINNIFHTLNIHSTSHGIRTNKYLNLPSPESIQCLAAERM
Homology
[Close]
BLAST of CsGy6G035840 vs. NCBI nr
Match: KGN49420.1 (hypothetical protein Csa_6G524100 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 SM 63
          SM
Sbjct: 61 SM 62

[Close]
BLAST of CsGy6G035840 vs. NCBI nr
Match: KZN07039.1 (hypothetical protein DCAR_007876 [Daucus carota subsp. sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.7e-10
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 0 

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
          MA+SR+ARFVTE APPQI+SVMR RTSK+LDTI+E+DRE + N+     P   S  ++SA
Sbjct: 1  MASSRVARFVTEAAPPQIVSVMRNRTSKILDTINEDDRELSVNDPRTVIPARSSPGSSSA 60

Query: 61 SMGPYIRL 69
          +  P+ ++
Sbjct: 61 AASPFKKI 68

[Close]
BLAST of CsGy6G035840 vs. NCBI nr
Match: AES90003.1 (hypothetical protein MTR_4g083110 [Medicago truncatula])

HSP 1 Score: 73.9 bits (180), Expect = 5.7e-10
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
          MANSRIARF  EVAPPQ +SVMR RTSK+++TI+E+DRE N N+   +PP+S  +S+ +A
Sbjct: 1  MANSRIARFFMEVAPPQYVSVMRHRTSKMMETITEDDREINSNDSVISPPKSSLASSLAA 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]
BLAST of CsGy6G035840 vs. NCBI nr
Match: PRQ29508.1 (hypothetical protein RchiOBHm_Chr5g0014631 [Rosa chinensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
           MAN+R+ARF+TE APPQI+SVMRRRTSKVLDTI+EEDRE       A+P  SL+SS   +
Sbjct: 52  MANARLARFITEAAPPQIVSVMRRRTSKVLDTITEEDREY------ASPNDSLNSSPKGS 109

Query: 61  SMGP 65
           S  P
Sbjct: 112 SALP 109

[Close]
BLAST of CsGy6G035840 vs. NCBI nr
Match: ESR40270.1 (hypothetical protein CICLE_v10026747mg [Citrus clementina] >KDO51194.1 hypothetical protein CISIN_1g032717mg [Citrus sinensis])

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
           MANSRIA+FV EVAPPQ +SVMR RT+K+LDTISEE+++ + ++  A+ PRS SS +T +
Sbjct: 45  MANSRIAKFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDVSGSDALASTPRSFSSCSTPS 104

Query: 61  S 62
           S
Sbjct: 105 S 105

[Close]
BLAST of CsGy6G035840 vs. TAIR10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1))

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-11
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRE 40
          MA SR+ARF+TEVAPPQ ++VMRRRT+KVLDTI EE+RE
Sbjct: 1  MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEERE 39

[Close]
BLAST of CsGy6G035840 vs. TAIR10
Match: AT4G21060.1 (Galactosyltransferase family protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.8e-05
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0 

Query: 1  MANSRIARFVTEVAPPQIISVMRRR--TSKVLDTISEEDRE 40
          MA SR+ARFV+EVAPPQ ++VMRR     + LDTI EE+ +
Sbjct: 1  MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENK 41

[Close]
BLAST of CsGy6G035840 vs. TrEMBL
Match: tr|A0A0A0KI68|A0A0A0KI68_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524100 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 SM 63
          SM
Sbjct: 61 SM 62

[Close]
BLAST of CsGy6G035840 vs. TrEMBL
Match: tr|G7JHI6|G7JHI6_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11441925 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.7e-10
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
          MANSRIARF  EVAPPQ +SVMR RTSK+++TI+E+DRE N N+   +PP+S  +S+ +A
Sbjct: 1  MANSRIARFFMEVAPPQYVSVMRHRTSKMMETITEDDREINSNDSVISPPKSSLASSLAA 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]
BLAST of CsGy6G035840 vs. TrEMBL
Match: tr|A0A161XIQ9|A0A161XIQ9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007876 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.7e-10
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 0 

Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
          MA+SR+ARFVTE APPQI+SVMR RTSK+LDTI+E+DRE + N+     P   S  ++SA
Sbjct: 1  MASSRVARFVTEAAPPQIVSVMRNRTSKILDTINEDDRELSVNDPRTVIPARSSPGSSSA 60

Query: 61 SMGPYIRL 69
          +  P+ ++
Sbjct: 61 AASPFKKI 68

[Close]
BLAST of CsGy6G035840 vs. TrEMBL
Match: tr|A0A2P6Q5Q7|A0A2P6Q5Q7_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-10
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
           MAN+R+ARF+TE APPQI+SVMRRRTSKVLDTI+EEDRE       A+P  SL+SS   +
Sbjct: 52  MANARLARFITEAAPPQIVSVMRRRTSKVLDTITEEDREY------ASPNDSLNSSPKGS 109

Query: 61  SMGP 65
           S  P
Sbjct: 112 SALP 109

[Close]
BLAST of CsGy6G035840 vs. TrEMBL
Match: tr|V4SN09|V4SN09_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026747mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60
           MANSRIA+FV EVAPPQ +SVMR RT+K+LDTISEE+++ + ++  A+ PRS SS +T +
Sbjct: 45  MANSRIAKFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDVSGSDALASTPRSFSSCSTPS 104

Query: 61  S 62
           S
Sbjct: 105 S 105

The following BLAST results are available for this feature:
BLAST of CsGy6G035840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49420.11.5e-23100.00hypothetical protein Csa_6G524100 [Cucumis sativus][more]
KZN07039.15.7e-1054.41hypothetical protein DCAR_007876 [Daucus carota subsp. sativus][more]
AES90003.15.7e-1060.66hypothetical protein MTR_4g083110 [Medicago truncatula][more]
PRQ29508.11.3e-0964.06hypothetical protein RchiOBHm_Chr5g0014631 [Rosa chinensis][more]
ESR40270.11.6e-0960.66hypothetical protein CICLE_v10026747mg [Citrus clementina] >KDO51194.1 hypotheti... [more]
BLAST of CsGy6G035840 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G30260.18.1e-1176.92BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein... [more]
AT4G21060.11.8e-0558.54Galactosyltransferase family protein[more]
BLAST of CsGy6G035840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy6G035840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KI68|A0A0A0KI68_CUCSA1.0e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524100 PE=4 SV=1[more]
tr|G7JHI6|G7JHI6_MEDTR3.7e-1060.66Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11441925 PE=4 SV=1[more]
tr|A0A161XIQ9|A0A161XIQ9_DAUCA3.7e-1054.41Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007876 ... [more]
tr|A0A2P6Q5Q7|A0A2P6Q5Q7_ROSCH8.3e-1064.06Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4... [more]
tr|V4SN09|V4SN09_9ROSI1.1e-0960.66Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026747mg PE=4 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G035840.1CsGy6G035840.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..59
NoneNo IPR availablePANTHERPTHR35101FAMILY NOT NAMEDcoord: 1..62
NoneNo IPR availablePANTHERPTHR35101:SF9SUBFAMILY NOT NAMEDcoord: 1..62

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G035840Csa6G524100Cucumber (Chinese Long) v2cgybcuB281
CsGy6G035840MELO3C007112Melon (DHL92) v3.5.1cgybmeB445
CsGy6G035840ClCG01G024840Watermelon (Charleston Gray)cgybwcgB399
CsGy6G035840CSPI06G36520Wild cucumber (PI 183967)cgybcpiB287
CsGy6G035840CmaCh07G000860Cucurbita maxima (Rimu)cgybcmaB861
CsGy6G035840CmoCh03G014170Cucurbita moschata (Rifu)cgybcmoB809
CsGy6G035840Cp4.1LG19g06030Cucurbita pepo (Zucchini)cgybcpeB810
CsGy6G035840MELO3C007112.2Melon (DHL92) v3.6.1cgybmedB442
CsGy6G035840CsaV3_6G051960Cucumber (Chinese Long) v3cgybcucB298
CsGy6G035840Bhi08G001659Wax gourdcgybwgoB608
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G035840Watermelon (97103) v2cgybwmbB394
CsGy6G035840Watermelon (97103) v2cgybwmbB429
CsGy6G035840Wax gourdcgybwgoB590
CsGy6G035840Cucurbita maxima (Rimu)cgybcmaB725
CsGy6G035840Cucurbita maxima (Rimu)cgybcmaB768
CsGy6G035840Cucurbita maxima (Rimu)cgybcmaB830
CsGy6G035840Cucurbita moschata (Rifu)cgybcmoB708
CsGy6G035840Cucurbita moschata (Rifu)cgybcmoB749
CsGy6G035840Cucurbita moschata (Rifu)cgybcmoB843
CsGy6G035840Cucurbita pepo (Zucchini)cgybcpeB706
CsGy6G035840Cucurbita pepo (Zucchini)cgybcpeB713
CsGy6G035840Cucurbita pepo (Zucchini)cgybcpeB813
CsGy6G035840Bottle gourd (USVL1VR-Ls)cgyblsiB398
CsGy6G035840Bottle gourd (USVL1VR-Ls)cgyblsiB401
CsGy6G035840Melon (DHL92) v3.5.1cgybmeB397
CsGy6G035840Melon (DHL92) v3.6.1cgybmedB396
CsGy6G035840Watermelon (Charleston Gray)cgybwcgB424
CsGy6G035840Watermelon (97103) v1cgybwmB451
CsGy6G035840Watermelon (97103) v1cgybwmB468
CsGy6G035840Silver-seed gourdcarcgybB0312
CsGy6G035840Silver-seed gourdcarcgybB0432
CsGy6G035840Silver-seed gourdcarcgybB0726