CmoCh03G014170 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G014170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Galactosyltransferase family protein
Location	Cmo_Chr03 : 10257897 .. 10258785 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTGGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATGTACTTCGTCAGAAACATAAATAGATCTTTCTCCAAATTCAATGATTGAATAATTTGTTGTCTGGAGTGAAAATTGGGACTTTGAGGCTTCATCACCATATCCTGTAGTTGAATTTTCATGTCGTTGTGGGATGAGTTCCTGAAATTTGTGCTCGCACAGTTTCCAGTGAACTTGCTAAAAGACTGTAATGCAAAATCTTATGTATAGTTTGTCGAGTTTGAAATGAGGAATTTGTAATGTTAAAATGCATAAGAATACTGTCATTCAGTCCAACGGTTTCAACGCAGATTAGTCAACAGAACATGCAAGATTAAACATTCAAATCATGCCTGCCATTTAATCTTTCCCTACACGGCCTAAACGAGTTTTTCATATGTTACGAAATGGGACATTAAACTCTCAGAGGAACTTGTTTGTTAGTACCAACCTTTTTCTTTGGAGGAGTTCGAATCTTTTCGTTTGCGCACTCTGGAAGACATGAATGTGCTTTCTTTCTGATTCAACCTTTTCCTTCAGTTTCTCTAGGGCTGTTAATCATTACAAATCAAAATAAGAAAAATGTATGGAGAACATCTATATGAACAAAAATAATAGAGGATTATTTATTTATTTATGTAACAGCTTCGCTGGAAACAACAATCCTTCCCAACAAATTAACCCAGCAACCTTCTTTACTTTTGGATAA

mRNA sequence

ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTGGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATCTTCGCTGGAAACAACAATCCTTCCCAACAAATTAACCCAGCAACCTTCTTTACTTTTGGATAA

Coding sequence (CDS)

ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTGGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATCTTCGCTGGAAACAACAATCCTTCCCAACAAATTAACCCAGCAACCTTCTTTACTTTTGGATAA

Homology

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BLAST of CmoCh03G014170 vs. TrEMBL
Match: A0A0A0KI68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524100 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-20
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPAS-PRSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+ PRSL SSTT A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 PMVVSANSIFAGNN--NPSQQIN 81
           MVV+ANS++   N   P  +IN
Sbjct: 61 SMVVAANSMYFVRNISRPFSKIN 83

[Close]

BLAST of CmoCh03G014170 vs. TrEMBL
Match: W9QKX7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011438 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60
          MANSRIARF+TEVAPPQ +SVMR RTSKVLDTI EEERD   N+   SP + P+ T P+ 
Sbjct: 1  MANSRIARFITEVAPPQFVSVMRHRTSKVLDTIKEEERDVCAND---SPNTSPAKTIPSA 60

Query: 61 MVVSANS 68
             S+ S
Sbjct: 61 HAFSSAS 64

[Close]

BLAST of CmoCh03G014170 vs. TrEMBL
Match: B9HZP8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02600g PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-GSKNEYPASPRSLPSSTTPA 60
          MANSRIA+F+TE APPQ ISVMR RTSK+LDTISEE+RD  + + +P +P S    TT A
Sbjct: 1  MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPFPMAPTSSTIVTTSA 60

Query: 61 PMVVSANSIF 70
            V + NS +
Sbjct: 61 TSVAAKNSTY 70

[Close]

BLAST of CmoCh03G014170 vs. TrEMBL
Match: V4SN09_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026747mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPAS-PRSLPSSTTP- 60
           MANSRIA+FV EVAPPQ +SVMR RT+K+LDTISEEE+D S ++  AS PRS  S +TP 
Sbjct: 45  MANSRIAKFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDVSGSDALASTPRSFSSCSTPS 104

Query: 61  -APMVVSANSIFAGNNNPSQQ 79
            A  VV+++S +     P QQ
Sbjct: 105 SASAVVASDSKYFLRGVPIQQ 125

[Close]

BLAST of CmoCh03G014170 vs. TrEMBL
Match: A0A067E7Q8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032717mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPAS-PRSLPSSTTP- 60
           MANSRIA+FV EVAPPQ +SVMR RT+K+LDTISEEE+D S ++  AS PRS  S +TP 
Sbjct: 45  MANSRIAKFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDVSGSDALASTPRSFSSCSTPS 104

Query: 61  -APMVVSANSIFAGNNNPSQQ 79
            A  VV+++S +     P QQ
Sbjct: 105 SASAVVASDSKYFLRGVPIQQ 125

[Close]

BLAST of CmoCh03G014170 vs. TAIR10
Match: AT1G30260.1 (AT1G30260.1 BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1))

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-11
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-GSKNEYPASPRSLPSS---T 60
          MA SR+ARF+TEVAPPQ ++VMRRRT+KVLDTI EEER+ G+ + +P+S  S   S   T
Sbjct: 1  MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFT 60

Query: 61 TPAPMVVSANSIFA 71
          +P    VS+ S  A
Sbjct: 61 SPYSSSVSSASASA 74

[Close]

BLAST of CmoCh03G014170 vs. TAIR10
Match: AT4G21060.1 (AT4G21060.1 Galactosyltransferase family protein)

HSP 1 Score: 47.4 bits (111), Expect = 5.4e-06
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRR--TSKVLDTISEEE 38
          MA SR+ARFV+EVAPPQ ++VMRR     + LDTI EEE
Sbjct: 1  MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEE 39

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: gi|700194216|gb|KGN49420.1| (hypothetical protein Csa_6G524100 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 3.6e-20
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPAS-PRSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+ PRSL SSTT A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 PMVVSANSIFAGNN--NPSQQIN 81
           MVV+ANS++   N   P  +IN
Sbjct: 61 SMVVAANSMYFVRNISRPFSKIN 83

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: gi|659078200|ref|XP_008439600.1| (PREDICTED: uncharacterized protein LOC103484347 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 8.9e-19
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASP-RSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+P RSL SS+T A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60

Query: 61 PMVVSANSIFAGNN 74
           M V ANS++   N
Sbjct: 61 SMAVGANSMYFVRN 74

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: gi|703076931|ref|XP_010090460.1| (hypothetical protein L484_011438 [Morus notabilis])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60
          MANSRIARF+TEVAPPQ +SVMR RTSKVLDTI EEERD   N+   SP + P+ T P+ 
Sbjct: 1  MANSRIARFITEVAPPQFVSVMRHRTSKVLDTIKEEERDVCAND---SPNTSPAKTIPSA 60

Query: 61 MVVSANS 68
             S+ S
Sbjct: 61 HAFSSAS 64

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: gi|224116416|ref|XP_002317294.1| (hypothetical protein POPTR_0011s02600g [Populus trichocarpa])

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-GSKNEYPASPRSLPSSTTPA 60
          MANSRIA+F+TE APPQ ISVMR RTSK+LDTISEE+RD  + + +P +P S    TT A
Sbjct: 1  MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPFPMAPTSSTIVTTSA 60

Query: 61 PMVVSANSIF 70
            V + NS +
Sbjct: 61 TSVAAKNSTY 70

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: gi|567868817|ref|XP_006427030.1| (hypothetical protein CICLE_v10026747mg [Citrus clementina])

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1


Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPAS-PRSLPSSTTP- 60
           MANSRIA+FV EVAPPQ +SVMR RT+K+LDTISEEE+D S ++  AS PRS  S +TP 
Sbjct: 45  MANSRIAKFVMEVAPPQFVSVMRHRTAKMLDTISEEEKDVSGSDALASTPRSFSSCSTPS 104

Query: 61  -APMVVSANSIFAGNNNPSQQ 79
            A  VV+++S +     P QQ
Sbjct: 105 SASAVVASDSKYFLRGVPIQQ 125

The following BLAST results are available for this feature:

BLAST of CmoCh03G014170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G014170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI68_CUCSA	2.5e-20	74.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524100 PE=4 SV=1	[more]
W9QKX7_9ROSA	6.2e-11	62.69	Uncharacterized protein OS=Morus notabilis GN=L484_011438 PE=4 SV=1	[more]
B9HZP8_POPTR	1.1e-10	58.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02600g PE=4 SV=1	[more]
V4SN09_9ROSI	1.1e-10	58.02	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026747mg PE=4 SV=1	[more]
A0A067E7Q8_CITSI	1.1e-10	58.02	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032717mg PE=4 SV=1	[more]

BLAST of CmoCh03G014170 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30260.1	1.9e-11	55.41	BEST Arabidopsis thaliana protein match is: Galactosyltransferase fa...	[more]
AT4G21060.1	5.4e-06	64.10	Galactosyltransferase family protein	[more]

BLAST of CmoCh03G014170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194216\|gb\|KGN49420.1\|	3.6e-20	74.70	hypothetical protein Csa_6G524100 [Cucumis sativus]	[more]
gi\|659078200\|ref\|XP_008439600.1\|	8.9e-19	77.03	PREDICTED: uncharacterized protein LOC103484347 [Cucumis melo]	[more]
gi\|703076931\|ref\|XP_010090460.1\|	8.9e-11	62.69	hypothetical protein L484_011438 [Morus notabilis]	[more]
gi\|224116416\|ref\|XP_002317294.1\|	1.5e-10	58.57	hypothetical protein POPTR_0011s02600g [Populus trichocarpa]	[more]
gi\|567868817\|ref\|XP_006427030.1\|	1.5e-10	58.02	hypothetical protein CICLE_v10026747mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G014170.1	CmoCh03G014170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35101	FAMILY NOT NAMED	coord: 2..69 score: 1.9
None	No IPR available	PANTHER	PTHR35101:SF1	SUBFAMILY NOT NAMED	coord: 2..69 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G014170	CmaCh07G000860	Cucurbita maxima (Rimu)	cmacmoB861
CmoCh03G014170	Csa6G524100	Cucumber (Chinese Long) v2	cmocuB667
CmoCh03G014170	MELO3C007112	Melon (DHL92) v3.5.1	cmomeB606
CmoCh03G014170	ClCG01G024840	Watermelon (Charleston Gray)	cmowcgB573
CmoCh03G014170	CSPI06G36520	Wild cucumber (PI 183967)	cmocpiB678
CmoCh03G014170	MELO3C007112.2	Melon (DHL92) v3.6.1	cmomedB695
CmoCh03G014170	Bhi08G001659	Wax gourd	cmowgoB0804
CmoCh03G014170	CsGy6G035840	Cucumber (Gy14) v2	cgybcmoB809

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G014170	Cucurbita maxima (Rimu)	cmacmoB236
CmoCh03G014170	Cucurbita maxima (Rimu)	cmacmoB417
CmoCh03G014170	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G014170	Melon (DHL92) v3.5.1	cmomeB582
CmoCh03G014170	Watermelon (Charleston Gray)	cmowcgB582
CmoCh03G014170	Watermelon (97103) v1	cmowmB613
CmoCh03G014170	Watermelon (97103) v1	cmowmB619
CmoCh03G014170	Cucurbita pepo (Zucchini)	cmocpeB603
CmoCh03G014170	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G014170	Cucurbita pepo (Zucchini)	cmocpeB618
CmoCh03G014170	Cucurbita pepo (Zucchini)	cmocpeB628
CmoCh03G014170	Bottle gourd (USVL1VR-Ls)	cmolsiB588
CmoCh03G014170	Bottle gourd (USVL1VR-Ls)	cmolsiB593
CmoCh03G014170	Melon (DHL92) v3.6.1	cmomedB668
CmoCh03G014170	Silver-seed gourd	carcmoB0408
CmoCh03G014170	Silver-seed gourd	carcmoB0571
CmoCh03G014170	Silver-seed gourd	carcmoB0995
CmoCh03G014170	Cucumber (Chinese Long) v3	cmocucB0791
CmoCh03G014170	Watermelon (97103) v2	cmowmbB639
CmoCh03G014170	Watermelon (97103) v2	cmowmbB655
CmoCh03G014170	Wax gourd	cmowgoB0782
CmoCh03G014170	Cucurbita moschata (Rifu)	cmocmoB183
CmoCh03G014170	Cucurbita moschata (Rifu)	cmocmoB334
CmoCh03G014170	Cucurbita moschata (Rifu)	cmocmoB459
CmoCh03G014170	Cucumber (Gy14) v1	cgycmoB0040