MELO3C007112 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007112
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Galactosyltransferase family protein
Location	chr8 : 899537 .. 900099 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAATCTAAATATCCGATTGAGTTTGAATGATTAAAATTGTTTTCGAGTGATTTTAACCATTACATACATATACATACATACATACATGTGTGTATATATATGTGTGTGTTAGGTGGTATCACCCAGAGCCAAAATATTGATTTCAAGTATTCCCCCACATCCATTCAGCTCCTAGTCTAAGAAAATCCTCAATAAATATCGCCCGAAAGCTTGGATTCACTCTCAGGCTCTCAACAAGACCAAGTAGAGCTTGGAGAGCATCACATTCTCAACCACCATCCTCCAACACTCAAACCCCTCCGAAAAATGGCAAATTCTCGTATAGCGAGGTTTGTTACTGAGGTTGCACCACCACAGATTATCAGTGTCATGAGGCGCCGCACATCAAAAGTGTTGGATACCATCAGTGAAGAGGATAGAGAGTGCAACAAGAATGAATACCCTGCTGCTCCCCAAAGAAGCCTATCATCGTCATCTACCTCTGCCTCTATGGCTGTTGGTGCCAATTCTATGTACTTCGTCCGAAACATAAGCAGACCTTTCTCCAAATTCAATGATTGA

mRNA sequence

GTAAATCTAAATATCCGATTGAGTTTGAATGATTAAAATTGTTTTCGAGTGATTTTAACCATTACATACATATACATACATACATACATGTGTGTATATATATGTGTGTGTTAGGTGGTATCACCCAGAGCCAAAATATTGATTTCAAGTATTCCCCCACATCCATTCAGCTCCTAGTCTAAGAAAATCCTCAATAAATATCGCCCGAAAGCTTGGATTCACTCTCAGGCTCTCAACAAGACCAAGTAGAGCTTGGAGAGCATCACATTCTCAACCACCATCCTCCAACACTCAAACCCCTCCGAAAAATGGCAAATTCTCGTATAGCGAGGTTTGTTACTGAGGTTGCACCACCACAGATTATCAGTGTCATGAGGCGCCGCACATCAAAAGTGTTGGATACCATCAGTGAAGAGGATAGAGAGTGCAACAAGAATGAATACCCTGCTGCTCCCCAAAGAAGCCTATCATCGTCATCTACCTCTGCCTCTATGGCTGTTGGTGCCAATTCTATGTACTTCGTCCGAAACATAAGCAGACCTTTCTCCAAATTCAATGATTGA

Coding sequence (CDS)

ATGGCAAATTCTCGTATAGCGAGGTTTGTTACTGAGGTTGCACCACCACAGATTATCAGTGTCATGAGGCGCCGCACATCAAAAGTGTTGGATACCATCAGTGAAGAGGATAGAGAGTGCAACAAGAATGAATACCCTGCTGCTCCCCAAAGAAGCCTATCATCGTCATCTACCTCTGCCTCTATGGCTGTTGGTGCCAATTCTATGTACTTCGTCCGAAACATAAGCAGACCTTTCTCCAAATTCAATGATTGA

Protein sequence

MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSASMAVGANSMYFVRNISRPFSKFND*

Homology

[Close]

BLAST of MELO3C007112 vs. TrEMBL
Match: A0A0A0KI68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524100 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-35
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAP RSLSSS+TSA
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 SMAVGANSMYFVRNISRPFSKFND 85
          SM V ANSMYFVRNISRPFSK ND
Sbjct: 61 SMVVAANSMYFVRNISRPFSKIND 84

[Close]

BLAST of MELO3C007112 vs. TrEMBL
Match: B9S0W8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0630180 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-15
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARF+TEVAPPQ ISV+RRR SK+LDTI+EE+R+ + +   A+   S +S+ST+A
Sbjct: 1  MANSRIARFITEVAPPQYISVIRRRASKMLDTINEEERDVSPSNSLASAPTSPASASTNA 60

Query: 61 SMA-----VGANSMYFVRNISRPFSKFND 85
          + A     V  NS YF R + R FS F +
Sbjct: 61 ASASAAAPVATNSKYFPRRVQRSFSVFQN 89

[Close]

BLAST of MELO3C007112 vs. TrEMBL
Match: B9HZP8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02600g PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNE-YPAAPQRSLSSSSTS 60
          MANSRIA+F+TE APPQ ISVMR RTSK+LDTISEEDR+   ++ +P AP  S +  +TS
Sbjct: 1  MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPFPMAPTSS-TIVTTS 60

Query: 61 ASMAVGANSMYFVRNISRPFSKF 83
          A+     NS YF + I R FS F
Sbjct: 61 ATSVAAKNSTYFFKGIRRSFSLF 82

[Close]

BLAST of MELO3C007112 vs. TrEMBL
Match: W9QKX7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011438 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYP------------AA 60
          MANSRIARF+TEVAPPQ +SVMR RTSKVLDTI EE+R+   N+ P            A 
Sbjct: 1  MANSRIARFITEVAPPQFVSVMRHRTSKVLDTIKEEERDVCANDSPNTSPAKTIPSAHAF 60

Query: 61 PQRSLSSSSTSASMAVGA--NSMYFVRNISRPFSKFN 84
             S SSS+T+    +G+   S YF++ + R FS FN
Sbjct: 61 SSASFSSSTTATKSTIGSCGKSRYFLKEVQRSFSIFN 97

[Close]

BLAST of MELO3C007112 vs. TrEMBL
Match: M1ARZ8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011149 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-14
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MAN+RIARFVTEVAPPQ ++VMR R SK+L+TI EE+RE + +E  +    SLSSS+ SA
Sbjct: 1  MANARIARFVTEVAPPQFVNVMRHRASKMLETIKEEEREASTSEALSLKSSSLSSSTFSA 60

Query: 61 SMAVGANSMYFVRNISRPFSKF 83
            +   NS YF+  + R  S F
Sbjct: 61 LSSNAKNSKYFLEEVQRSLSAF 82

[Close]

BLAST of MELO3C007112 vs. TAIR10
Match: AT1G30260.1 (AT1G30260.1 BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1))

HSP 1 Score: 70.5 bits (171), Expect = 5.7e-13
Identity = 40/88 (45.45%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECN--------------KNEYP 60
          MA SR+ARF+TEVAPPQ ++VMRRRT+KVLDTI EE+RE                 + + 
Sbjct: 1  MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFT 60

Query: 61 AAPQRSLSSSSTSASMAVGANSMYFVRN 75
          +    S+SS+S SAS   G N      N
Sbjct: 61 SPYSSSVSSASASASCTSGLNKFPVTEN 88

[Close]

BLAST of MELO3C007112 vs. TAIR10
Match: AT4G21060.1 (AT4G21060.1 Galactosyltransferase family protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.1e-06
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRR--TSKVLDTISEEDRE 40
          MA SR+ARFV+EVAPPQ ++VMRR     + LDTI EE+ +
Sbjct: 1  MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENK 41

[Close]

BLAST of MELO3C007112 vs. NCBI nr
Match: gi|659078200|ref|XP_008439600.1| (PREDICTED: uncharacterized protein LOC103484347 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60

Query: 61 SMAVGANSMYFVRNISRPFSKFND 85
          SMAVGANSMYFVRNISRPFSKFND
Sbjct: 61 SMAVGANSMYFVRNISRPFSKFND 84

[Close]

BLAST of MELO3C007112 vs. NCBI nr
Match: gi|700194216|gb|KGN49420.1| (hypothetical protein Csa_6G524100 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 3.8e-35
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAP RSLSSS+TSA
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 SMAVGANSMYFVRNISRPFSKFND 85
          SM V ANSMYFVRNISRPFSK ND
Sbjct: 61 SMVVAANSMYFVRNISRPFSKIND 84

[Close]

BLAST of MELO3C007112 vs. NCBI nr
Match: gi|223541054|gb|EEF42610.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 87.8 bits (216), Expect = 9.9e-15
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60
          MANSRIARF+TEVAPPQ ISV+RRR SK+LDTI+EE+R+ + +   A+   S +S+ST+A
Sbjct: 1  MANSRIARFITEVAPPQYISVIRRRASKMLDTINEEERDVSPSNSLASAPTSPASASTNA 60

Query: 61 SMA-----VGANSMYFVRNISRPFSKFND 85
          + A     V  NS YF R + R FS F +
Sbjct: 61 ASASAAAPVATNSKYFPRRVQRSFSVFQN 89

[Close]

BLAST of MELO3C007112 vs. NCBI nr
Match: gi|703076931|ref|XP_010090460.1| (hypothetical protein L484_011438 [Morus notabilis])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYP------------AA 60
          MANSRIARF+TEVAPPQ +SVMR RTSKVLDTI EE+R+   N+ P            A 
Sbjct: 1  MANSRIARFITEVAPPQFVSVMRHRTSKVLDTIKEEERDVCANDSPNTSPAKTIPSAHAF 60

Query: 61 PQRSLSSSSTSASMAVGA--NSMYFVRNISRPFSKFN 84
             S SSS+T+    +G+   S YF++ + R FS FN
Sbjct: 61 SSASFSSSTTATKSTIGSCGKSRYFLKEVQRSFSIFN 97

[Close]

BLAST of MELO3C007112 vs. NCBI nr
Match: gi|224116416|ref|XP_002317294.1| (hypothetical protein POPTR_0011s02600g [Populus trichocarpa])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNE-YPAAPQRSLSSSSTS 60
          MANSRIA+F+TE APPQ ISVMR RTSK+LDTISEEDR+   ++ +P AP  S +  +TS
Sbjct: 1  MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPFPMAPTSS-TIVTTS 60

Query: 61 ASMAVGANSMYFVRNISRPFSKF 83
          A+     NS YF + I R FS F
Sbjct: 61 ATSVAAKNSTYFFKGIRRSFSLF 82

The following BLAST results are available for this feature:

BLAST of MELO3C007112 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI68_CUCSA	2.7e-35	94.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524100 PE=4 SV=1	[more]
B9S0W8_RICCO	6.9e-15	53.93	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0630180 PE=4 SV=1	[more]
B9HZP8_POPTR	1.2e-14	57.83	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02600g PE=4 SV=1	[more]
W9QKX7_9ROSA	1.2e-14	50.52	Uncharacterized protein OS=Morus notabilis GN=L484_011438 PE=4 SV=1	[more]
M1ARZ8_SOLTU	3.4e-14	53.66	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011149 PE=4 SV=1	[more]

BLAST of MELO3C007112 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30260.1	5.7e-13	45.45	BEST Arabidopsis thaliana protein match is: Galactosyltransferase fa...	[more]
AT4G21060.1	3.1e-06	58.54	Galactosyltransferase family protein	[more]

BLAST of MELO3C007112 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078200\|ref\|XP_008439600.1\|	4.9e-38	100.00	PREDICTED: uncharacterized protein LOC103484347 [Cucumis melo]	[more]
gi\|700194216\|gb\|KGN49420.1\|	3.8e-35	94.05	hypothetical protein Csa_6G524100 [Cucumis sativus]	[more]
gi\|223541054\|gb\|EEF42610.1\|	9.9e-15	53.93	conserved hypothetical protein [Ricinus communis]	[more]
gi\|703076931\|ref\|XP_010090460.1\|	1.7e-14	50.52	hypothetical protein L484_011438 [Morus notabilis]	[more]
gi\|224116416\|ref\|XP_002317294.1\|	1.7e-14	57.83	hypothetical protein POPTR_0011s02600g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007112T1	MELO3C007112T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35101	FAMILY NOT NAMED	coord: 2..82 score: 2.3
None	No IPR available	PANTHER	PTHR35101:SF1	SUBFAMILY NOT NAMED	coord: 2..82 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007112	Csa6G524100	Cucumber (Chinese Long) v2	cumeB507
MELO3C007112	ClCG01G024840	Watermelon (Charleston Gray)	mewcgB515
MELO3C007112	Bhi08G001659	Wax gourd	mewgoB665
MELO3C007112	CSPI06G36520	Wild cucumber (PI 183967)	cpimeB512
MELO3C007112	CmaCh07G000860	Cucurbita maxima (Rimu)	cmameB798
MELO3C007112	CmoCh03G014170	Cucurbita moschata (Rifu)	cmomeB606
MELO3C007112	CsGy6G035840	Cucumber (Gy14) v2	cgybmeB445
MELO3C007112	CsaV3_6G051960	Cucumber (Chinese Long) v3	cucmeB520

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007112	Cucumber (Gy14) v1	cgymeB027
MELO3C007112	Cucurbita maxima (Rimu)	cmameB211
MELO3C007112	Cucurbita maxima (Rimu)	cmameB381
MELO3C007112	Cucurbita maxima (Rimu)	cmameB618
MELO3C007112	Cucurbita moschata (Rifu)	cmomeB195
MELO3C007112	Cucurbita moschata (Rifu)	cmomeB373
MELO3C007112	Cucurbita moschata (Rifu)	cmomeB782
MELO3C007112	Watermelon (Charleston Gray)	mewcgB523
MELO3C007112	Watermelon (97103) v1	mewmB562
MELO3C007112	Watermelon (97103) v1	mewmB572
MELO3C007112	Cucurbita pepo (Zucchini)	cpemeB044
MELO3C007112	Cucurbita pepo (Zucchini)	cpemeB061
MELO3C007112	Cucurbita pepo (Zucchini)	cpemeB457
MELO3C007112	Cucurbita pepo (Zucchini)	cpemeB485
MELO3C007112	Bottle gourd (USVL1VR-Ls)	lsimeB149
MELO3C007112	Bottle gourd (USVL1VR-Ls)	lsimeB228
MELO3C007112	Silver-seed gourd	carmeB0301
MELO3C007112	Silver-seed gourd	carmeB0431
MELO3C007112	Silver-seed gourd	carmeB0725
MELO3C007112	Watermelon (97103) v2	mewmbB515
MELO3C007112	Watermelon (97103) v2	mewmbB530
MELO3C007112	Wax gourd	mewgoB650
MELO3C007112	Melon (DHL92) v3.5.1	memeB075