Cp4.1LG19g06030 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g06030
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGalactosyltransferase family protein
LocationCp4.1LG19 : 7722726 .. 7723236 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATTCCCGATTAGCAAGGTTTGTTACTGAAGTTGCGCCACCACAGATCATCAGTGTCATGAGATGCCGGACGTCGAAAGTGCTGGACACCATCAGTGAAGAGGAGAGAGACTGTAGCAAGTATGAGTATCCTGCTTCCCCAATAAGTCCATCACCATCAACTACCCCTGCTCCTACAACTGTTAGTGCCAATTCTAGGTACTTCGTTAGAAACATAAATAGATCTTTCTCCACGTTGAATAATTGAATGTGTAACCTCGAGTGAAAATAATAAGCCTTAAAGGCACTATCACCATCTCCTGTAGTTAAATTTTCATGTCCTTGTGGGCTGAGTCCCGGAAATTTGTACTTGCACAGTTTCCAGTGAATTTGCTAAGACTGTAATGAAACCATATGTATAATTAGTCGAGTTTAATGAGGATTTTGTAATGTTCTAATGCTTAAGAATACTGTCTTTCAGTCGATTAGTTTCAATGCAGACTAGTCAAAGGAACAAGGAAGATTAA

mRNA sequence

ATGGCGAATTCCCGATTAGCAAGGTTTGTTACTGAAGTTGCGCCACCACAGATCATCAGTGTCATGAGATGCCGGACGTCGAAAGTGCTGGACACCATCAGTGAAGAGGAGAGAGACTGTAGCAAGTATGAGTATCCTGCTTCCCCAATAAGTCCATCACCATCAACTACCCCTGCTCCTACAACTGTTAGTGCCAATTCTAGTCGATTAGTTTCAATGCAGACTAGTCAAAGGAACAAGGAAGATTAA

Coding sequence (CDS)

ATGGCGAATTCCCGATTAGCAAGGTTTGTTACTGAAGTTGCGCCACCACAGATCATCAGTGTCATGAGATGCCGGACGTCGAAAGTGCTGGACACCATCAGTGAAGAGGAGAGAGACTGTAGCAAGTATGAGTATCCTGCTTCCCCAATAAGTCCATCACCATCAACTACCCCTGCTCCTACAACTGTTAGTGCCAATTCTAGTCGATTAGTTTCAATGCAGACTAGTCAAAGGAACAAGGAAGATTAA

Protein sequence

MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYEYPASPISPSPSTTPAPTTVSANSSRLVSMQTSQRNKED
Homology
[Close]
BLAST of Cp4.1LG19g06030 vs. TrEMBL
Match: A0A0A0KI68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524100 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYEYPAS-PISPSPSTTPA 60
          MANSR+ARFVTEVAPPQIISVMR RTSKVLDTISEE+R+C+K EYPA+ P S S STT A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 PTTVSANSSRLV 72
             V+ANS   V
Sbjct: 61 SMVVAANSMYFV 72

[Close]
BLAST of Cp4.1LG19g06030 vs. TrEMBL
Match: W9QKX7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011438 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.4e-10
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYEYPASPISPSPSTTPAP 60
          MANSR+ARF+TEVAPPQ +SVMR RTSKVLDTI EEERD           + SP+T+PA 
Sbjct: 1  MANSRIARFITEVAPPQFVSVMRHRTSKVLDTIKEEERDVC--------ANDSPNTSPAK 60

Query: 61 TTVSANSSRLVSMQTS 77
          T  SA++    S  +S
Sbjct: 61 TIPSAHAFSSASFSSS 68

[Close]
BLAST of Cp4.1LG19g06030 vs. TrEMBL
Match: B9HZP8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02600g PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-09
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYE-YPASPISPSPSTTPA 60
          MANSR+A+F+TE APPQ ISVMR RTSK+LDTISEE+RD +  + +P +P S +  TT A
Sbjct: 1  MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPFPMAPTSSTIVTTSA 60

Query: 61 PTTVSANSS 69
           +  + NS+
Sbjct: 61 TSVAAKNST 69

[Close]
BLAST of Cp4.1LG19g06030 vs. TrEMBL
Match: B9S0W8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0630180 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-08
Identity = 38/78 (48.72%), Postives = 58/78 (74.36%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYEYPASPISPSPSTTPAP 60
          MANSR+ARF+TEVAPPQ ISV+R R SK+LDTI+EEERD S    P++ ++ +P++  + 
Sbjct: 1  MANSRIARFITEVAPPQYISVIRRRASKMLDTINEEERDVS----PSNSLASAPTSPASA 60

Query: 61 TTVSANSSRLVSMQTSQR 79
          +T +A++S    + T+ +
Sbjct: 61 STNAASASAAAPVATNSK 74

[Close]
BLAST of Cp4.1LG19g06030 vs. TrEMBL
Match: A0A087HRU3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G310000 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-08
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYEYPASPISPSPSTTPAP 60
          MA+SRLARF+TEVAPPQ ++VMR RT+KVLDTI EEER+       +S IS  PS++ + 
Sbjct: 1  MASSRLARFITEVAPPQFVTVMRRRTTKVLDTIKEEEREIGTDSIFSSKISSFPSSSSSV 60

Query: 61 TTVS 65
          +T S
Sbjct: 61 STSS 64

[Close]
BLAST of Cp4.1LG19g06030 vs. TAIR10
Match: AT1G30260.1 (AT1G30260.1 BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1))

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-10
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYE-YPASPIS---PSPST 60
          MA SRLARF+TEVAPPQ ++VMR RT+KVLDTI EEER+      +P+S  S    SP T
Sbjct: 1  MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFT 60

Query: 61 TPAPTTVSANSS 69
          +P  ++VS+ S+
Sbjct: 61 SPYSSSVSSASA 72

[Close]
BLAST of Cp4.1LG19g06030 vs. NCBI nr
Match: gi|700194216|gb|KGN49420.1| (hypothetical protein Csa_6G524100 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-15
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYEYPAS-PISPSPSTTPA 60
          MANSR+ARFVTEVAPPQIISVMR RTSKVLDTISEE+R+C+K EYPA+ P S S STT A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 PTTVSANSSRLV 72
             V+ANS   V
Sbjct: 61 SMVVAANSMYFV 72

[Close]
BLAST of Cp4.1LG19g06030 vs. NCBI nr
Match: gi|659078200|ref|XP_008439600.1| (PREDICTED: uncharacterized protein LOC103484347 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 7.3e-15
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYEYPASP-ISPSPSTTPA 60
          MANSR+ARFVTEVAPPQIISVMR RTSKVLDTISEE+R+C+K EYPA+P  S S S+T A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60

Query: 61 PTTVSANSSRLV 72
             V ANS   V
Sbjct: 61 SMAVGANSMYFV 72

[Close]
BLAST of Cp4.1LG19g06030 vs. NCBI nr
Match: gi|703076931|ref|XP_010090460.1| (hypothetical protein L484_011438 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 9.2e-10
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYEYPASPISPSPSTTPAP 60
          MANSR+ARF+TEVAPPQ +SVMR RTSKVLDTI EEERD           + SP+T+PA 
Sbjct: 1  MANSRIARFITEVAPPQFVSVMRHRTSKVLDTIKEEERDVC--------ANDSPNTSPAK 60

Query: 61 TTVSANSSRLVSMQTS 77
          T  SA++    S  +S
Sbjct: 61 TIPSAHAFSSASFSSS 68

[Close]
BLAST of Cp4.1LG19g06030 vs. NCBI nr
Match: gi|224116416|ref|XP_002317294.1| (hypothetical protein POPTR_0011s02600g [Populus trichocarpa])

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-09
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYE-YPASPISPSPSTTPA 60
          MANSR+A+F+TE APPQ ISVMR RTSK+LDTISEE+RD +  + +P +P S +  TT A
Sbjct: 1  MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPFPMAPTSSTIVTTSA 60

Query: 61 PTTVSANSS 69
           +  + NS+
Sbjct: 61 TSVAAKNST 69

[Close]
BLAST of Cp4.1LG19g06030 vs. NCBI nr
Match: gi|1009107003|ref|XP_015877382.1| (PREDICTED: uncharacterized protein LOC107413845 [Ziziphus jujuba])

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-09
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1 

Query: 1  MANSRLARFVTEVAPPQIISVMRCRTSKVLDTISEEERDCSKYEYPASPISPSPSTTPAP 60
          MAN+R+ARF+TEVAPPQ +SVMR RTSKV+DTI+EEERD S      +  S   S T AP
Sbjct: 1  MANTRIARFITEVAPPQFVSVMRHRTSKVMDTINEEERDDS-----LASFSKGSSPTSAP 60

Query: 61 TTVSANSSRLVS 73
          T  S+ +S  VS
Sbjct: 61 TCSSSATSGSVS 67

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g06030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g06030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI68_CUCSA1.3e-1573.61Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524100 PE=4 SV=1[more]
W9QKX7_9ROSA6.4e-1056.58Uncharacterized protein OS=Morus notabilis GN=L484_011438 PE=4 SV=1[more]
B9HZP8_POPTR3.2e-0956.52Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02600g PE=4 SV=1[more]
B9S0W8_RICCO1.6e-0848.72Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0630180 PE=4 SV=1[more]
A0A087HRU3_ARAAL3.5e-0857.81Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G310000 PE=4 SV=1[more]
BLAST of Cp4.1LG19g06030 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G30260.12.0e-1055.56 BEST Arabidopsis thaliana protein match is: Galactosyltransferase fa... [more]
BLAST of Cp4.1LG19g06030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194216|gb|KGN49420.1|1.9e-1573.61hypothetical protein Csa_6G524100 [Cucumis sativus][more]
gi|659078200|ref|XP_008439600.1|7.3e-1572.22PREDICTED: uncharacterized protein LOC103484347 [Cucumis melo][more]
gi|703076931|ref|XP_010090460.1|9.2e-1056.58hypothetical protein L484_011438 [Morus notabilis][more]
gi|224116416|ref|XP_002317294.1|4.6e-0956.52hypothetical protein POPTR_0011s02600g [Populus trichocarpa][more]
gi|1009107003|ref|XP_015877382.1|7.8e-0958.33PREDICTED: uncharacterized protein LOC107413845 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g06030.1Cp4.1LG19g06030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35101FAMILY NOT NAMEDcoord: 2..78
score: 4.3
NoneNo IPR availablePANTHERPTHR35101:SF1SUBFAMILY NOT NAMEDcoord: 2..78
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG19g06030CmaCh07G000860Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g06030Csa6G524100Cucumber (Chinese Long) v2cpecuB503
Cp4.1LG19g06030ClCG01G024840Watermelon (Charleston Gray)cpewcgB425
Cp4.1LG19g06030CSPI06G36520Wild cucumber (PI 183967)cpecpiB503
Cp4.1LG19g06030CsaV3_6G051960Cucumber (Chinese Long) v3cpecucB0618
Cp4.1LG19g06030Bhi08G001659Wax gourdcpewgoB0619
Cp4.1LG19g06030CsGy6G035840Cucumber (Gy14) v2cgybcpeB810
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g06030Melon (DHL92) v3.6.1cpemedB517
Cp4.1LG19g06030Melon (DHL92) v3.6.1cpemedB540
Cp4.1LG19g06030Silver-seed gourdcarcpeB0415
Cp4.1LG19g06030Silver-seed gourdcarcpeB0593
Cp4.1LG19g06030Silver-seed gourdcarcpeB1029
Cp4.1LG19g06030Wax gourdcpewgoB0597
Cp4.1LG19g06030Cucurbita pepo (Zucchini)cpecpeB043
Cp4.1LG19g06030Cucurbita pepo (Zucchini)cpecpeB083
Cp4.1LG19g06030Cucurbita pepo (Zucchini)cpecpeB412
Cp4.1LG19g06030Cucumber (Gy14) v1cgycpeB0039
Cp4.1LG19g06030Cucurbita maxima (Rimu)cmacpeB232
Cp4.1LG19g06030Cucurbita maxima (Rimu)cmacpeB437
Cp4.1LG19g06030Cucurbita maxima (Rimu)cmacpeB667
Cp4.1LG19g06030Cucurbita moschata (Rifu)cmocpeB199
Cp4.1LG19g06030Cucurbita moschata (Rifu)cmocpeB402
Cp4.1LG19g06030Cucurbita moschata (Rifu)cmocpeB618
Cp4.1LG19g06030Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g06030Bottle gourd (USVL1VR-Ls)cpelsiB396
Cp4.1LG19g06030Bottle gourd (USVL1VR-Ls)cpelsiB402
Cp4.1LG19g06030Watermelon (Charleston Gray)cpewcgB431
Cp4.1LG19g06030Watermelon (97103) v1cpewmB478
Cp4.1LG19g06030Watermelon (97103) v1cpewmB482
Cp4.1LG19g06030Melon (DHL92) v3.5.1cpemeB438
Cp4.1LG19g06030Melon (DHL92) v3.5.1cpemeB457